AT5G14240

CONTAINS InterPro DOMAIN s Thioredoxin fold (InterPro IPR012335), Phosducin (InterPro IPR001200), Thioredoxin-like fold (InterPro IPR012336)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0002093
Physical Location & Seq
Reverse (-)
4595928 .. 4597708
1781 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G14240.1

Sequence Viewer

Length: 771 bp
ATGGCGGATTATCATTTCGTGTATAAGGACATTGAAGGAGCGTCAACTCAATGGGATGATATCCAGCGGAAATTGGGGAATCTACCGGAGAAGGCTCCGGCTTTCAAACCTCCGGCGTATACTCCGGCGGAAGACGAGTCTTCAGCTCCTAAGGATCAGGCATGGTTTGATAAGAAGACAGAGGAGGAGCTTGAGGATCTTGAGGACGACAAAGATCTCGACGATGATCGCTTTCTCGAAGAATACAGGAAGAAGAGGTTGTCTGAGCTAAGAGAGGCTGCTAAAGTTAAAAGATATGGAACAGTGACTCCCATCTCGGGCTCTGATTTCGTGAGGGAGGTTACGCAAGCTTCTGCTGAAGATTGGGTTGTTGTATGTCTCTATAAAGATGGTGTTGCAGAATGTAGTTTGCTATTGGGTTGTCTAGACGAATTGGGTAGTAGATACCCAGCAACAAAGTTCGTTAAGATAATATCTACTGATTGTATTCCGAACTACCCTGATTGCAATCTTCCTACCTTGCTGGTGTACCACCATGGCGCCATCAAAGGAACTCATGTAGGCTTAAAGAGCTTTGGCCGTAGGTGCACCCCAGAGAGTGTAGCCTTACTTCTGTGTCAATCAGAGCCAGTTCTTAACGATGGCAAAGGAGGAGACGATGACTCCTCGAGGGAAGCTGTGATGGCTGGAGTTCGAAGACAGTTCATAGAACGAGTGGTGAAGGACCACGAAGATAAGGATAACGATGATGGTGGTTACAATAGTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Phosducin

Protein Analysis

256

Amino Acids

28.75

Weight (kDa)

4.72

Isoelectric Point (pI)

43.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Phosducin PF02114 59 - 187 5.4e-16 Phosducin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 667
AccB1I GGYRCC 1 cut(s) 539
AccI GTMKAC 1 cut(s) 119
AciI CCGC 3 cut(s) 5, 67, 128
AclWI GGATC 2 cut(s) 162, 204
AcoI YGGCCR 1 cut(s) 577
AcuI CTGAAG 2 cut(s) 126, 378
AcyI GRCGYC 1 cut(s) 540
AfaI GTAC 1 cut(s) 530
AfiI CCNNNNNNNGG 1 cut(s) 317
AgsI TTSAA 2 cut(s) 35, 106
AloI GAACNNNNNNTCC 2 cut(s) 292, 324
AluBI AGCT 6 cut(s) 146, 190, 268, 350, 573, 677
AluI AGCT 6 cut(s) 146, 190, 268, 350, 573, 677
Alw21I GWGCWC 1 cut(s) 590
Alw26I GTCTC 2 cut(s) 383, 648
Alw44I GTGCAC 1 cut(s) 586
AlwI GGATC 2 cut(s) 162, 204
Ama87I CYCGRG 2 cut(s) 316, 667
AoxI GGCC 1 cut(s) 577
ApaLI GTGCAC 1 cut(s) 586
ApeKI GCWGC 1 cut(s) 278
AspLEI GCGC 1 cut(s) 542
AspS9I GGNCC 1 cut(s) 724
AsuHPI GGTGA 1 cut(s) 730
AsuII TTCGAA 1 cut(s) 694
AvaI CYCGRG 2 cut(s) 316, 667
AvaII GGWCC 1 cut(s) 724
AxyI CCTNAGG 1 cut(s) 150
BaeGI GKGCMC 1 cut(s) 590
BanI GGYRCC 1 cut(s) 539
BanII GRGCYC 1 cut(s) 323
BarI GAAGNNNNNNTAC 2 cut(s) 594, 626
BbsI GAAGAC 4 cut(s) 132, 138, 182, 703
Bbv12I GWGCWC 1 cut(s) 590
BbvI GCAGC 1 cut(s) 265
BccI CCATC 6 cut(s) 320, 383, 551, 635, 676, 743
BceAI ACGGC 1 cut(s) 564
BcoDI GTCTC 2 cut(s) 383, 648
BfaI CTAG 1 cut(s) 425
BfoI RGCGCY 1 cut(s) 543
BglII AGATCT 1 cut(s) 214
BisI GCNGC 1 cut(s) 279
BlsI GCNGC 1 cut(s) 280
Bme18I GGWCC 1 cut(s) 724
BmeT110I CYCGRG 2 cut(s) 316, 667
BmgT120I GGNCC 1 cut(s) 724
BmiI GGNNCC 2 cut(s) 96, 541
BpiI GAAGAC 4 cut(s) 132, 138, 182, 703
BpmI CTGGAG 1 cut(s) 708
Bpu14I TTCGAA 1 cut(s) 694
BpuEI CTTGAG 2 cut(s) 212, 221
BsaBI GATNNNNATC 1 cut(s) 507
BsaHI GRCGYC 1 cut(s) 540
BsaJI CCNNGG 1 cut(s) 535
BsaWI WCCGGW 1 cut(s) 85
BsaXI ACNNNNNCTCC 4 cut(s) 292, 322, 647, 677
Bsc4I CCNNNNNNNGG 1 cut(s) 317
Bse1I ACTGG 1 cut(s) 629
Bse21I CCTNAGG 1 cut(s) 150
Bse8I GATNNNNATC 1 cut(s) 507
BseDI CCNNGG 1 cut(s) 535
BseGI GGATG 1 cut(s) 61
BseJI GATNNNNATC 1 cut(s) 507
BseLI CCNNNNNNNGG 1 cut(s) 317
BseMII CTCAG 1 cut(s) 255
BseNI ACTGG 1 cut(s) 629
BseRI GAGGAG 4 cut(s) 197, 200, 655, 666
BseSI GKGCMC 1 cut(s) 590
BseXI GCAGC 1 cut(s) 265
BseYI CCCAGC 1 cut(s) 448
BshFI GGCC 1 cut(s) 579
BshNI GGYRCC 1 cut(s) 539
BsiHKAI GWGCWC 1 cut(s) 590
BsiHKCI CYCGRG 2 cut(s) 316, 667
BsiSI CCGG 4 cut(s) 86, 98, 113, 125
BslI CCNNNNNNNGG 1 cut(s) 317
BsmAI GTCTC 2 cut(s) 383, 648
BsmBI CGTCTC 1 cut(s) 648
BsnI GGCC 1 cut(s) 579
BsoBI CYCGRG 2 cut(s) 316, 667
Bsp119I TTCGAA 1 cut(s) 694
Bsp1286I GDGCHC 2 cut(s) 323, 590
Bsp143I GATC 4 cut(s) 154, 196, 214, 226
Bsp19I CCATGG 1 cut(s) 535
BspACI CCGC 3 cut(s) 5, 67, 128
BspANI GGCC 1 cut(s) 579
BspCNI CTCAG 1 cut(s) 256
BspLI GGNNCC 2 cut(s) 96, 541
BspPI GGATC 2 cut(s) 162, 204
BspT104I TTCGAA 1 cut(s) 694
BspT107I GGYRCC 1 cut(s) 539
BsrI ACTGG 1 cut(s) 629
BssECI CCNNGG 1 cut(s) 535
BssMI GATC 4 cut(s) 154, 196, 214, 226
BssNAI GTATAC 1 cut(s) 120
BssNI GRCGYC 1 cut(s) 540
BssT1I CCWWGG 1 cut(s) 535
Bst1107I GTATAC 1 cut(s) 120
Bst4CI ACNGT 2 cut(s) 304, 702
Bst6I CTCTTC 1 cut(s) 248
BstACI GRCGYC 1 cut(s) 540
BstBI TTCGAA 1 cut(s) 694
BstC8I GCNNGC 1 cut(s) 348
BstDEI CTNAG 3 cut(s) 150, 264, 269
BstDSI CCRYGG 1 cut(s) 535
BstF5I GGATG 1 cut(s) 61
BstH2I RGCGCY 1 cut(s) 543
BstHHI GCGC 1 cut(s) 542
BstKTI GATC 4 cut(s) 157, 199, 217, 229
BstMAI GTCTC 2 cut(s) 383, 648
BstMBI GATC 4 cut(s) 154, 196, 214, 226
BstMWI GCNNNNNNNGC 3 cut(s) 570, 585, 683
BstSLI GKGCMC 1 cut(s) 590
BstV1I GCAGC 1 cut(s) 265
BstV2I GAAGAC 4 cut(s) 132, 138, 182, 703
BstX2I RGATCY 2 cut(s) 196, 214
BstYI RGATCY 2 cut(s) 196, 214
BstZ17I GTATAC 1 cut(s) 120
Bsu36I CCTNAGG 1 cut(s) 150
BsuRI GGCC 1 cut(s) 579
BtgI CCRYGG 1 cut(s) 535
BtsCI GGATG 1 cut(s) 61
BtsIMutI CAGTG 1 cut(s) 309
Cac8I GCNNGC 1 cut(s) 348
CfoI GCGC 1 cut(s) 542
Cfr13I GGNCC 1 cut(s) 724
CseI GACGC 1 cut(s) 30
Csp6I GTAC 1 cut(s) 529
CviAII CATG 3 cut(s) 162, 536, 557
CviQI GTAC 1 cut(s) 529
DdeI CTNAG 3 cut(s) 150, 264, 269
DinI GGCGCC 1 cut(s) 541
DpnI GATC 4 cut(s) 156, 198, 216, 228
DpnII GATC 4 cut(s) 154, 196, 214, 226
EaeI YGGCCR 1 cut(s) 577
Eam1104I CTCTTC 1 cut(s) 248
EarI CTCTTC 1 cut(s) 248
EciI GGCGGA 2 cut(s) 20, 143
Eco130I CCWWGG 1 cut(s) 535
Eco24I GRGCYC 1 cut(s) 323
Eco32I GATATC 1 cut(s) 61
Eco47I GGWCC 1 cut(s) 724
Eco57I CTGAAG 2 cut(s) 126, 378
Eco81I CCTNAGG 1 cut(s) 150
Eco88I CYCGRG 2 cut(s) 316, 667
EcoRV GATATC 1 cut(s) 61
EcoT14I CCWWGG 1 cut(s) 535
EcoT38I GRGCYC 1 cut(s) 323
EgeI GGCGCC 1 cut(s) 541
EheI GGCGCC 1 cut(s) 541
ErhI CCWWGG 1 cut(s) 535
Esp3I CGTCTC 1 cut(s) 648
FaeI CATG 3 cut(s) 165, 539, 560
FaiI YATR 9 cut(s) 24, 120, 163, 297, 376, 384, 537, 558, 707
FatI CATG 3 cut(s) 161, 535, 556
FblI GTMKAC 1 cut(s) 119
Fnu4HI GCNGC 1 cut(s) 279
FokI GGATG 1 cut(s) 68
FriOI GRGCYC 1 cut(s) 323
Fsp4HI GCNGC 1 cut(s) 279
FspBI CTAG 1 cut(s) 425
GlaI GCGC 1 cut(s) 541
GluI GCNGC 1 cut(s) 279
GsaI CCCAGC 1 cut(s) 452
GsuI CTGGAG 1 cut(s) 708
HaeII RGCGCY 1 cut(s) 543
HaeIII GGCC 1 cut(s) 579
HapII CCGG 4 cut(s) 86, 98, 113, 125
HgaI GACGC 1 cut(s) 30
HhaI GCGC 1 cut(s) 542
Hin1I GRCGYC 1 cut(s) 540
Hin1II CATG 3 cut(s) 165, 539, 560
Hin6I GCGC 1 cut(s) 540
HinP1I GCGC 1 cut(s) 540
HincII GTYRAC 1 cut(s) 45
HindII GTYRAC 1 cut(s) 45
HindIII AAGCTT 1 cut(s) 348
HinfI GANTC 4 cut(s) 79, 137, 307, 662
HpaII CCGG 4 cut(s) 86, 98, 113, 125
HphI GGTGA 1 cut(s) 730
Hpy166II GTNNAC 4 cut(s) 45, 120, 529, 588
Hpy188I TCNGA 4 cut(s) 265, 325, 492, 625
Hpy188III TCNNGA 5 cut(s) 200, 218, 236, 331, 425
Hpy8I GTNNAC 4 cut(s) 45, 120, 529, 588
Hpy99I CGWCG 1 cut(s) 224
HpyAV CCTTC 3 cut(s) 29, 85, 715
HpyCH4III ACNGT 2 cut(s) 304, 702
HpyCH4V TGCA 3 cut(s) 398, 507, 588
HpyF10VI GCNNNNNNNGC 3 cut(s) 570, 585, 683
HpyF3I CTNAG 3 cut(s) 150, 264, 269
Hsp92I GRCGYC 1 cut(s) 540
Hsp92II CATG 3 cut(s) 165, 539, 560
HspAI GCGC 1 cut(s) 540
KasI GGCGCC 1 cut(s) 539
Kzo9I GATC 4 cut(s) 154, 196, 214, 226
LmnI GCTCC 4 cut(s) 38, 100, 151, 187
Lsp1109I GCAGC 1 cut(s) 265
MaeI CTAG 1 cut(s) 425
MaeIII GTNAC 3 cut(s) 304, 340, 755
MalI GATC 4 cut(s) 156, 198, 216, 228
MboI GATC 4 cut(s) 154, 196, 214, 226
MflI RGATCY 2 cut(s) 196, 214
MhlI GDGCHC 2 cut(s) 323, 590
MluCI AATT 2 cut(s) 71, 431
Mly113I GGCGCC 1 cut(s) 540
MlyI GAGTC 3 cut(s) 146, 301, 656
MseI TTAA 4 cut(s) 288, 465, 566, 636
MspA1I CMGCKG 1 cut(s) 67
MspI CCGG 4 cut(s) 86, 98, 113, 125
MwoI GCNNNNNNNGC 3 cut(s) 570, 585, 683
NarI GGCGCC 1 cut(s) 540
NcoI CCATGG 1 cut(s) 535
NdeII GATC 4 cut(s) 154, 196, 214, 226
NlaIII CATG 3 cut(s) 165, 539, 560
NlaIV GGNNCC 2 cut(s) 96, 541
NmuCI GTSAC 1 cut(s) 304
NspV TTCGAA 1 cut(s) 694
PaeR7I CTCGAG 1 cut(s) 667
PfeI GAWTC 1 cut(s) 79
PkrI GCNGC 1 cut(s) 280
PleI GAGTC 3 cut(s) 145, 301, 656
PluTI GGCGCC 1 cut(s) 543
PpsI GAGTC 3 cut(s) 145, 301, 656
PspFI CCCAGC 1 cut(s) 448
PspN4I GGNNCC 2 cut(s) 96, 541
PspPI GGNCC 1 cut(s) 724
PspXI VCTCGAGB 1 cut(s) 667
PsuI RGATCY 2 cut(s) 196, 214
RsaI GTAC 1 cut(s) 530
RsaNI GTAC 1 cut(s) 529
SaqAI TTAA 4 cut(s) 288, 465, 566, 636
SatI GCNGC 1 cut(s) 279
Sau3AI GATC 4 cut(s) 154, 196, 214, 226
Sau96I GGNCC 1 cut(s) 724
SchI GAGTC 3 cut(s) 146, 301, 656
SduI GDGCHC 2 cut(s) 323, 590
SfoI GGCGCC 1 cut(s) 541
Sfr274I CTCGAG 1 cut(s) 667
SfuI TTCGAA 1 cut(s) 694
SinI GGWCC 1 cut(s) 724
SlaI CTCGAG 1 cut(s) 667
SmlI CTYRAG 3 cut(s) 191, 200, 667
SmoI CTYRAG 3 cut(s) 191, 200, 667
Sse9I AATT 2 cut(s) 71, 431
SsiI CCGC 3 cut(s) 5, 67, 128
SspDI GGCGCC 1 cut(s) 539
SspMI CTAG 1 cut(s) 425
StyI CCWWGG 1 cut(s) 535
TaaI ACNGT 2 cut(s) 304, 702
TaqI TCGA 4 cut(s) 219, 237, 668, 694
TasI AATT 2 cut(s) 71, 431
TfiI GAWTC 1 cut(s) 79
Tru1I TTAA 4 cut(s) 288, 465, 566, 636
Tru9I TTAA 4 cut(s) 288, 465, 566, 636
TscAI CASTG 1 cut(s) 309
TseFI GTSAC 1 cut(s) 304
TseI GCWGC 1 cut(s) 278
Tsp45I GTSAC 1 cut(s) 304
TspDTI ATGAA 1 cut(s) 694
TspRI CASTG 1 cut(s) 309
VneI GTGCAC 1 cut(s) 586
VpaK11BI GGWCC 1 cut(s) 724
XbaI TCTAGA 1 cut(s) 424
XhoI CTCGAG 1 cut(s) 667
XmiI GTMKAC 1 cut(s) 119
XspI CTAG 1 cut(s) 425
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.