Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0002093

Physical Location & Seq

Genomic Coordinates Forward (+)

26639591 .. 26640782

Gene Structure 1192 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G302500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGCGGACTATCACTTTGTGTACAAGGACGTGGAAGGAGCATCGACGCAGTGGGATGACATACAGAGAAAGCTAGGGAACCTACCAGCGAAACCACCAGCGTTCAAGCCAGCACCTTTCACTCCGGCCAATGATCAAGCCTCTCTTCCTAAAGACAAGTCCTGGATCGATGAAAAGACCGAGCAGGACCTCGAGGACCTCGAAGACAATCCCGATCTCGACGACGATCGCTTCCTCGAAGAATATAGGAAGAAGAGGCTGGCTGAGTTGAGAGAAACAGCTAAGGTAGCGAGGTTTGGATCGGTTGTGCCGATTTCGGGATCAGATTTCGTGCGAGAGGTTTCGCAAGCTCCGGCTGATGTTTGGGTGGTTGTGATTCTGTACAAAGAAGGAATTGCGGAATGTGGGGTGCTGATGCAATGCTTGGAAGATTTGGCTGCGAAATACCCAGCTACCAAATTTGTGAAGATAATATCCACCGACTGCATCCCAAATTACCCAGATCGTAACGTTCCCACTGTTTTGGTGTACAACAGTGGTGCTGTCAAAGCAAATCACGTTGGCTTGCGAAGCTTTGGCCGGAGATGCACACCTGAAGGTGTGGCATTAGTTCTCTGCCAATCAGATCCTGTGCTCACCGATGGGCAGAGTGGAAATGGCCGGTCAAGGAAAGCTGTGATCGACGGGGTTCGCAAGAGGTTTATAGAGAAAGTTGTGACAGAGCATGAAAATGATGACGATGGATCTTCAAGCGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Phosducin

Protein Analysis

253

Amino Acids

28.0

Weight (kDa)

4.95

Isoelectric Point (pI)

41.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002093)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14240
fragaria_vesca	FvH4_6g20890 FvH4_6g20890 FvH4_6g20890
malus_domestica	MD09G1015300.v1.1 MD17G1015400.v1.1
prunus_persica	Prupe.3G302500_v2.0.a1 Prupe.6G027300_v2.0.a1 Prupe.6G027300_v2.0.a1
pyrus_communis	pycom111g01240 pycom17g01260
rosa_chinensis	RchiOBHm_Chr1g0359641 RchiOBHm_Chr1g0359651 RchiOBHm_Chr2g0174741 RchiOBHm_Chr3g0477231 RchiOBHm_Chr3g0477241 RchiOBHm_Chr6g0252661
rosa_laevigata	RLG00000023735 RLG00000035432
rosa_multiflora	Rmu_sc0030318.1_g000001 Rmu_ssc0000313.1_g000003
rosa_roxburghii	Rroxscaffold_6G00404300 Rroxscaffold_6G00404780
rosa_rugosa	Rorug02G0109900 Rorug03G0158900 Rorug05G0567300 Rorug07G0186500
rosa_samantha	Rh1AG466100 Rh2AG497000 Rh2AG660500 Rh2BG671300 Rh2CG483100 Rh3AG209500 Rh3BG242800 Rh3BG242900 Rh3CG237000 Rh3DG236100 Rh4AG255500 Rh4BG260900 Rh6BG064900 Rh7BG354100
rosa_wichuraiana	Rw0G000240 Rw0G021750 Rw2G054110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	191
AciI	CCGC	2 cut(s)	5, 398
AclI	AACGTT	1 cut(s)	510
AclWI	GGATC	5 cut(s)	173, 307, 328, 620, 751
AcoI	YGGCCR	3 cut(s)	126, 577, 658
AcsI	RAATTY	1 cut(s)	458
AcuI	CTGAAG	1 cut(s)	615
AdeI	CACNNNGTG	1 cut(s)	19
AfaI	GTAC	3 cut(s)	23, 383, 530
AfiI	CCNNNNNNNGG	1 cut(s)	317
AgsI	TTSAA	2 cut(s)	106, 750
AjiI	CACGTC	1 cut(s)	31
AjnI	CCWGG	1 cut(s)	161
AluBI	AGCT	6 cut(s)	73, 281, 350, 452, 573, 674
AluI	AGCT	6 cut(s)	73, 281, 350, 452, 573, 674
Alw21I	GWGCWC	1 cut(s)	636
AlwI	GGATC	5 cut(s)	173, 307, 328, 620, 751
AlwNI	CAGNNNCTG	1 cut(s)	629
Ama87I	CYCGRG	1 cut(s)	191
AoxI	GGCC	3 cut(s)	126, 577, 658
ApeKI	GCWGC	1 cut(s)	437
ApoI	RAATTY	1 cut(s)	458
ArsI	GACNNNNNNTTYG	1 cut(s)	31
AspS9I	GGNCC	2 cut(s)	187, 196
AsuHPI	GGTGA	1 cut(s)	628
AvaI	CYCGRG	1 cut(s)	191
AvaII	GGWCC	2 cut(s)	187, 196
BbsI	GAAGAC	1 cut(s)	210
Bbv12I	GWGCWC	1 cut(s)	636
BbvI	GCAGC	1 cut(s)	424
BccI	CCATC	2 cut(s)	635, 734
BciT130I	CCWGG	1 cut(s)	163
BclI	TGATCA	1 cut(s)	133
BfaI	CTAG	1 cut(s)	74
BisI	GCNGC	1 cut(s)	438
BlsI	GCNGC	1 cut(s)	439
Bme1390I	CCNGG	1 cut(s)	163
Bme18I	GGWCC	2 cut(s)	187, 196
BmeT110I	CYCGRG	1 cut(s)	191
BmgBI	CACGTC	1 cut(s)	31
BmgT120I	GGNCC	2 cut(s)	187, 196
BmiI	GGNNCC	1 cut(s)	80
BmrFI	CCNGG	1 cut(s)	163
BmsI	GCATC	4 cut(s)	50, 405, 495, 575
BpiI	GAAGAC	1 cut(s)	210
Bpu10I	CCTNAGC	1 cut(s)	282
Bsa29I	ATCGAT	1 cut(s)	168
Bsc4I	CCNNNNNNNGG	1 cut(s)	317
Bse118I	RCCGGY	1 cut(s)	660
Bse3DI	GCAATG	1 cut(s)	425
BseBI	CCWGG	1 cut(s)	163
BseCI	ATCGAT	1 cut(s)	168
BseGI	GGATG	2 cut(s)	61, 486
BseLI	CCNNNNNNNGG	1 cut(s)	317
BseMI	GCAATG	1 cut(s)	425
BseMII	CTCAG	1 cut(s)	255
BseXI	GCAGC	1 cut(s)	424
BseYI	CCCAGC	1 cut(s)	448
Bsh1285I	CGRYCG	1 cut(s)	229
BshFI	GGCC	3 cut(s)	128, 579, 660
BshVI	ATCGAT	1 cut(s)	168
BsiEI	CGRYCG	1 cut(s)	229
BsiHKAI	GWGCWC	1 cut(s)	636
BsiHKCI	CYCGRG	1 cut(s)	191
BsiSI	CCGG	4 cut(s)	125, 353, 580, 661
BslI	CCNNNNNNNGG	1 cut(s)	317
BsnI	GGCC	3 cut(s)	128, 579, 660
BsoBI	CYCGRG	1 cut(s)	191
Bsp1286I	GDGCHC	1 cut(s)	636
Bsp1407I	TGTACA	3 cut(s)	21, 381, 528
BspACI	CCGC	2 cut(s)	5, 398
BspANI	GGCC	3 cut(s)	128, 579, 660
BspCNI	CTCAG	1 cut(s)	256
BspDI	ATCGAT	1 cut(s)	168
BspLI	GGNNCC	1 cut(s)	80
BspPI	GGATC	5 cut(s)	173, 307, 328, 620, 751
BsrDI	GCAATG	1 cut(s)	425
BsrFI	RCCGGY	1 cut(s)	660
BsrGI	TGTACA	3 cut(s)	21, 381, 528
BssAI	RCCGGY	1 cut(s)	660
Bst2UI	CCWGG	1 cut(s)	163
Bst4CI	ACNGT	2 cut(s)	520, 536
Bst6I	CTCTTC	2 cut(s)	150, 248
BstAUI	TGTACA	3 cut(s)	21, 381, 528
BstC8I	GCNNGC	4 cut(s)	111, 261, 348, 566
BstDEI	CTNAG	2 cut(s)	264, 282
BstF5I	GGATG	2 cut(s)	61, 486
BstMCI	CGRYCG	1 cut(s)	229
BstMWI	GCNNNNNNNGC	4 cut(s)	287, 548, 570, 585
BstNI	CCWGG	1 cut(s)	163
BstSCI	CCNGG	1 cut(s)	161
BstV1I	GCAGC	1 cut(s)	424
BstV2I	GAAGAC	1 cut(s)	210
BstX2I	RGATCY	2 cut(s)	625, 743
BstXI	CCANNNNNNTGG	1 cut(s)	523
BstYI	RGATCY	2 cut(s)	625, 743
Bsu15I	ATCGAT	1 cut(s)	168
BsuRI	GGCC	3 cut(s)	128, 579, 660
BsuTUI	ATCGAT	1 cut(s)	168
BtrI	CACGTC	1 cut(s)	31
BtsCI	GGATG	2 cut(s)	61, 486
BtsI	GCAGTG	1 cut(s)	56
BtsIMutI	CAGTG	3 cut(s)	56, 516, 541
Cac8I	GCNNGC	4 cut(s)	111, 261, 348, 566
CaiI	CAGNNNCTG	1 cut(s)	629
Cfr10I	RCCGGY	1 cut(s)	660
Cfr13I	GGNCC	2 cut(s)	187, 196
ClaI	ATCGAT	1 cut(s)	168
CseI	GACGC	1 cut(s)	55
Csp6I	GTAC	3 cut(s)	22, 382, 529
CviAII	CATG	1 cut(s)	725
CviQI	GTAC	3 cut(s)	22, 382, 529
DdeI	CTNAG	2 cut(s)	264, 282
DraIII	CACNNNGTG	1 cut(s)	19
EaeI	YGGCCR	3 cut(s)	126, 577, 658
Eam1104I	CTCTTC	2 cut(s)	150, 248
EarI	CTCTTC	2 cut(s)	150, 248
EciI	GGCGGA	1 cut(s)	20
Eco47I	GGWCC	2 cut(s)	187, 196
Eco57I	CTGAAG	1 cut(s)	615
Eco88I	CYCGRG	1 cut(s)	191
EcoO109I	RGGNCCY	2 cut(s)	187, 196
EcoRII	CCWGG	1 cut(s)	161
FaeI	CATG	1 cut(s)	728
FaiI	YATR	4 cut(s)	62, 246, 704, 726
FalI	AAGNNNNNCTT	2 cut(s)	129, 161
FatI	CATG	1 cut(s)	724
FbaI	TGATCA	1 cut(s)	133
Fnu4HI	GCNGC	1 cut(s)	438
FokI	GGATG	2 cut(s)	68, 473
Fsp4HI	GCNGC	1 cut(s)	438
FspBI	CTAG	1 cut(s)	74
GluI	GCNGC	1 cut(s)	438
GsaI	CCCAGC	1 cut(s)	452
HaeIII	GGCC	3 cut(s)	128, 579, 660
HapII	CCGG	4 cut(s)	125, 353, 580, 661
HgaI	GACGC	1 cut(s)	55
Hin1II	CATG	1 cut(s)	728
HindIII	AAGCTT	1 cut(s)	571
HinfI	GANTC	1 cut(s)	376
HpaII	CCGG	4 cut(s)	125, 353, 580, 661
HphI	GGTGA	1 cut(s)	628
Hpy166II	GTNNAC	2 cut(s)	22, 529
Hpy188I	TCNGA	2 cut(s)	325, 625
Hpy188III	TCNNGA	3 cut(s)	212, 218, 318
Hpy8I	GTNNAC	2 cut(s)	22, 529
Hpy99I	CGWCG	4 cut(s)	49, 224, 227, 686
HpyAV	CCTTC	3 cut(s)	29, 383, 590
HpyCH4III	ACNGT	2 cut(s)	520, 536
HpyCH4IV	ACGT	3 cut(s)	30, 510, 558
HpyCH4V	TGCA	3 cut(s)	418, 486, 588
HpyF10VI	GCNNNNNNNGC	4 cut(s)	287, 548, 570, 585
HpyF3I	CTNAG	2 cut(s)	264, 282
HpySE526I	ACGT	3 cut(s)	30, 510, 558
Hsp92II	CATG	1 cut(s)	728
Ksp22I	TGATCA	1 cut(s)	133
LmnI	GCTCC	2 cut(s)	38, 355
Lsp1109I	GCAGC	1 cut(s)	424
LweI	GCATC	4 cut(s)	50, 405, 495, 575
MaeI	CTAG	1 cut(s)	74
MaeII	ACGT	3 cut(s)	30, 510, 558
MaeIII	GTNAC	2 cut(s)	506, 715
MboII	GAAGA	8 cut(s)	137, 215, 251, 262, 265, 440, 478, 738
MflI	RGATCY	2 cut(s)	625, 743
MhlI	GDGCHC	1 cut(s)	636
MluCI	AATT	3 cut(s)	393, 458, 493
MnlI	CCTC	9 cut(s)	151, 187, 200, 209, 245, 249, 285, 331, 690
MslI	CAYNNNNRTG	1 cut(s)	729
MspI	CCGG	4 cut(s)	125, 353, 580, 661
MspR9I	CCNGG	1 cut(s)	163
MvaI	CCWGG	1 cut(s)	163
MwoI	GCNNNNNNNGC	4 cut(s)	287, 548, 570, 585
NlaIII	CATG	1 cut(s)	728
NlaIV	GGNNCC	1 cut(s)	80
NmuCI	GTSAC	1 cut(s)	715
PaeR7I	CTCGAG	1 cut(s)	191
PcsI	WCGNNNNNNNCGW	2 cut(s)	198, 308
PfeI	GAWTC	1 cut(s)	376
PfoI	TCCNGGA	1 cut(s)	161
PkrI	GCNGC	1 cut(s)	439
Ple19I	CGATCG	1 cut(s)	229
PpuMI	RGGWCCY	2 cut(s)	187, 196
Psp1406I	AACGTT	1 cut(s)	510
Psp5II	RGGWCCY	2 cut(s)	187, 196
Psp6I	CCWGG	1 cut(s)	161
PspFI	CCCAGC	1 cut(s)	448
PspGI	CCWGG	1 cut(s)	161
PspN4I	GGNNCC	1 cut(s)	80
PspPI	GGNCC	2 cut(s)	187, 196
PspPPI	RGGWCCY	2 cut(s)	187, 196
PspXI	VCTCGAGB	1 cut(s)	191
PstNI	CAGNNNCTG	1 cut(s)	629
PsuI	RGATCY	2 cut(s)	625, 743
PvuI	CGATCG	1 cut(s)	229
RsaI	GTAC	3 cut(s)	23, 383, 530
RsaNI	GTAC	3 cut(s)	22, 382, 529
RseI	CAYNNNNRTG	1 cut(s)	729
SatI	GCNGC	1 cut(s)	438
Sau96I	GGNCC	2 cut(s)	187, 196
ScrFI	CCNGG	1 cut(s)	163
SduI	GDGCHC	1 cut(s)	636
SfaNI	GCATC	4 cut(s)	50, 405, 495, 575
Sfr274I	CTCGAG	1 cut(s)	191
SinI	GGWCC	2 cut(s)	187, 196
SlaI	CTCGAG	1 cut(s)	191
SmiMI	CAYNNNNRTG	1 cut(s)	729
SmlI	CTYRAG	1 cut(s)	191
SmoI	CTYRAG	1 cut(s)	191
Sse9I	AATT	3 cut(s)	393, 458, 493
SsiI	CCGC	2 cut(s)	5, 398
SspMI	CTAG	1 cut(s)	74
StyD4I	CCNGG	1 cut(s)	161
TaaI	ACNGT	2 cut(s)	520, 536
TaiI	ACGT	3 cut(s)	33, 513, 561
TaqI	TCGA	7 cut(s)	44, 168, 192, 201, 219, 237, 681
TaqII	GACCGA	1 cut(s)	194
TasI	AATT	3 cut(s)	393, 458, 493
TatI	WGTACW	3 cut(s)	21, 381, 528
TfiI	GAWTC	1 cut(s)	376
TscAI	CASTG	3 cut(s)	56, 523, 541
TseFI	GTSAC	1 cut(s)	715
TseI	GCWGC	1 cut(s)	437
Tsp45I	GTSAC	1 cut(s)	715
TspDTI	ATGAA	2 cut(s)	186, 741
TspRI	CASTG	3 cut(s)	56, 523, 541
VpaK11BI	GGWCC	2 cut(s)	187, 196
XapI	RAATTY	1 cut(s)	458
XhoI	CTCGAG	1 cut(s)	191
XspI	CTAG	1 cut(s)	74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.