RchiOBHm_Chr3g0477231

Phosducin-like protein 3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0002093
Physical Location & Seq
Reverse (-)
23065051 .. 23066807
1757 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ44255

Sequence Viewer

Length: 1167 bp
ATGGGGGACTATCACTATATCTACAAGGACTTGGACGGAGCCTCCACCCAGTGGGACGATATTCAGGCAAAGCTCGGCAATCTTCCGCCGAAGAAGCCGGCGTTTAAGCCTCCGCCCTTCACTCCGGCCGAGGACGAAGCCTCTCTTCCCAAAGACAAGTCTTGGATCGATGACAAGACCGAGCAGGACCTCGAAGATCTCGAAGACGATCCCGATCTCGATGACGATCGCTTCCTCGAGGAATACAGGAGGAAGAGGCTGTCGGAATTGAGAGAAGCAGCCAAGGTTGCAAGGTTTGGGTCAGTGGTTCCGATTTCGGGATCAGATTTTGTGCGCGAGGTTTCGCAAGCTCCGCCTGACGTTTGGGTGGTGGTGATTCTCTACAAAGAAGGAATTGCAGAGTGTGGATTGTTGATGCAGTGTCTGGAGGATTTGGCAACCAAGTACCCAGCAACCAAATTTGTGAAAATAATATCCACAGACTGCATTCCTAACTACCCTGATCGTAATCTTCCCACTCTTTTAGTGTACAACAGTGGCGCTGTCAAGGCCAATCACGTTGGGTTGCGCAGCTTTGGTAGGAGGTGCACACCTGAAGGTAGCTTTCTCCTTTTGAATGCCGCTCTGATTTTGTTATTTCCTTTGCATCTGGACAGCTTGATAGGTCTTTTCGACTCAAAAAATTGGCCAAGTTTTTTGTGCAATACATGGCTTCTTGCGGTTTATATGGAATTGCTGCAACTTCATCTACTACTTATGAGTGTGTGGATTATTGAACATGATTTCACCTCCGGAGGAGAAATCTATTGGCCGGTGGGTTTTAGCATAGATGATGAATTACTCCTTAAAGCTGGACATTTAAATGCACACAAATCATTCTCTATACTCCTCTTGCAAACAATACTGTTTATAGATACAAATATGTCTCTTCTTCAGTACATACAATTAACTTCTTTTGTTTATGTAGCTCAAATACTTGAGCTGATGATCATGATTAGCGTTCTCTTTAGACTTTGGCCTTGTGTGGCATTAGTTCTCTGTCAATCAGATCCTGTACTTAATGATGGGCAGAGTGTTAATGGTCGATCAAGGGAAGCTGTCAAGAGGTTCATAGAGAAAGTTGTGACACAACATGAAGATAAGGACGATGGATATTCAAGTGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Phosducin

Protein Analysis

388

Amino Acids

43.99

Weight (kDa)

4.79

Isoelectric Point (pI)

43.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Phosducin PF02114 70 - 187 8.2e-15 Phosducin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 236
Acc16I TGCGCA 1 cut(s) 569
AccB7I CCANNNNNTGG 1 cut(s) 51
AccBSI CCGCTC 1 cut(s) 623
AccII CGCG 1 cut(s) 336
AccIII TCCGGA 1 cut(s) 791
AciI CCGC 5 cut(s) 86, 113, 353, 621, 719
AclWI GGATC 4 cut(s) 173, 203, 328, 1043
AcoI YGGCCR 3 cut(s) 126, 686, 809
AcsI RAATTY 1 cut(s) 458
AcuI CTGAAG 2 cut(s) 615, 917
AdeI CACNNNGTG 1 cut(s) 51
AfaI GTAC 4 cut(s) 446, 530, 938, 1056
AfiI CCNNNNNNNGG 2 cut(s) 51, 317
AgsI TTSAA 3 cut(s) 616, 776, 1158
AluBI AGCT 9 cut(s) 73, 350, 573, 603, 657, 851, 968, 982, 1097
AluI AGCT 9 cut(s) 73, 350, 573, 603, 657, 851, 968, 982, 1097
Alw21I GWGCWC 1 cut(s) 590
Alw26I GTCTC 1 cut(s) 930
Alw44I GTGCAC 1 cut(s) 586
AlwI GGATC 4 cut(s) 173, 203, 328, 1043
AlwNI CAGNNNCTG 2 cut(s) 424, 1052
Ama87I CYCGRG 1 cut(s) 236
Aor13HI TCCGGA 1 cut(s) 791
AoxI GGCC 5 cut(s) 126, 549, 686, 809, 1016
ApaLI GTGCAC 1 cut(s) 586
ApeKI GCWGC 3 cut(s) 278, 570, 736
ApoI RAATTY 1 cut(s) 458
AspLEI GCGC 3 cut(s) 336, 542, 570
AspS9I GGNCC 1 cut(s) 187
AsuHPI GGTGA 2 cut(s) 385, 778
AvaI CYCGRG 1 cut(s) 236
AvaII GGWCC 1 cut(s) 187
BaeGI GKGCMC 1 cut(s) 590
BalI TGGCCA 1 cut(s) 688
BbsI GAAGAC 1 cut(s) 210
Bbv12I GWGCWC 1 cut(s) 590
BbvI GCAGC 3 cut(s) 290, 582, 723
BccI CCATC 2 cut(s) 1058, 1142
BclI TGATCA 1 cut(s) 987
BcoDI GTCTC 1 cut(s) 930
BfaI CTAG 1 cut(s) 1165
BfoI RGCGCY 1 cut(s) 543
BglII AGATCT 1 cut(s) 196
BisI GCNGC 4 cut(s) 279, 571, 621, 737
BlsI GCNGC 4 cut(s) 280, 572, 622, 738
Bme18I GGWCC 1 cut(s) 187
BmeT110I CYCGRG 1 cut(s) 236
BmgT120I GGNCC 1 cut(s) 187
BmiI GGNNCC 2 cut(s) 40, 309
BmrI ACTGGG 1 cut(s) 43
BmsI GCATC 2 cut(s) 405, 655
BmuI ACTGGG 1 cut(s) 43
BpiI GAAGAC 1 cut(s) 210
BpmI CTGGAG 1 cut(s) 446
BpuEI CTTGAG 1 cut(s) 998
Bsa29I ATCGAT 1 cut(s) 168
BsaBI GATNNNNATC 3 cut(s) 213, 225, 507
BsaJI CCNNGG 2 cut(s) 129, 282
BsaWI WCCGGW 1 cut(s) 791
BsaXI ACNNNNNCTCC 2 cut(s) 26, 56
Bsc4I CCNNNNNNNGG 2 cut(s) 51, 317
Bse118I RCCGGY 2 cut(s) 97, 811
Bse1I ACTGG 1 cut(s) 49
Bse8I GATNNNNATC 3 cut(s) 213, 225, 507
BseAI TCCGGA 1 cut(s) 791
BseCI ATCGAT 1 cut(s) 168
BseDI CCNNGG 2 cut(s) 129, 282
BseJI GATNNNNATC 3 cut(s) 213, 225, 507
BseLI CCNNNNNNNGG 2 cut(s) 51, 317
BseNI ACTGG 1 cut(s) 49
BseRI GAGGAG 2 cut(s) 810, 878
BseSI GKGCMC 1 cut(s) 590
BseX3I CGGCCG 1 cut(s) 126
BseXI GCAGC 3 cut(s) 290, 582, 723
BseYI CCCAGC 1 cut(s) 448
Bsh1236I CGCG 1 cut(s) 336
Bsh1285I CGRYCG 2 cut(s) 129, 229
BshFI GGCC 5 cut(s) 128, 551, 688, 811, 1018
BshVI ATCGAT 1 cut(s) 168
BsiEI CGRYCG 2 cut(s) 129, 229
BsiHKAI GWGCWC 1 cut(s) 590
BsiHKCI CYCGRG 1 cut(s) 236
BsiSI CCGG 4 cut(s) 98, 125, 792, 812
BslFI GGGAC 2 cut(s) 20, 68
BslI CCNNNNNNNGG 2 cut(s) 51, 317
BsmAI GTCTC 1 cut(s) 930
BsmFI GGGAC 2 cut(s) 20, 68
BsmI GAATGC 2 cut(s) 486, 622
BsnI GGCC 5 cut(s) 128, 551, 688, 811, 1018
BsoBI CYCGRG 1 cut(s) 236
Bsp1286I GDGCHC 1 cut(s) 590
Bsp13I TCCGGA 1 cut(s) 791
Bsp1407I TGTACA 1 cut(s) 528
BspACI CCGC 5 cut(s) 86, 113, 353, 621, 719
BspANI GGCC 5 cut(s) 128, 551, 688, 811, 1018
BspDI ATCGAT 1 cut(s) 168
BspEI TCCGGA 1 cut(s) 791
BspFNI CGCG 1 cut(s) 336
BspHI TCATGA 1 cut(s) 990
BspLI GGNNCC 2 cut(s) 40, 309
BspPI GGATC 4 cut(s) 173, 203, 328, 1043
BsrBI CCGCTC 1 cut(s) 623
BsrFI RCCGGY 2 cut(s) 97, 811
BsrGI TGTACA 1 cut(s) 528
BsrI ACTGG 1 cut(s) 49
BssAI RCCGGY 2 cut(s) 97, 811
BssECI CCNNGG 2 cut(s) 129, 282
BssT1I CCWWGG 1 cut(s) 282
Bst4CI ACNGT 2 cut(s) 536, 906
Bst6I CTCTTC 3 cut(s) 150, 248, 933
BstAUI TGTACA 1 cut(s) 528
BstC8I GCNNGC 2 cut(s) 99, 348
BstFNI CGCG 1 cut(s) 336
BstH2I RGCGCY 1 cut(s) 543
BstHHI GCGC 3 cut(s) 336, 542, 570
BstMAI GTCTC 1 cut(s) 930
BstMCI CGRYCG 2 cut(s) 129, 229
BstMWI GCNNNNNNNGC 4 cut(s) 94, 287, 352, 548
BstSLI GKGCMC 1 cut(s) 590
BstUI CGCG 1 cut(s) 336
BstV1I GCAGC 3 cut(s) 290, 582, 723
BstV2I GAAGAC 1 cut(s) 210
BstX2I RGATCY 2 cut(s) 196, 1048
BstYI RGATCY 2 cut(s) 196, 1048
BstZI CGGCCG 1 cut(s) 126
Bsu15I ATCGAT 1 cut(s) 168
BsuRI GGCC 5 cut(s) 128, 551, 688, 811, 1018
BsuTUI ATCGAT 1 cut(s) 168
BtsI GCAGTG 1 cut(s) 425
BtsIMutI CAGTG 4 cut(s) 56, 309, 425, 541
Cac8I GCNNGC 2 cut(s) 99, 348
CaiI CAGNNNCTG 2 cut(s) 424, 1052
CciI TCATGA 1 cut(s) 990
CfoI GCGC 3 cut(s) 336, 542, 570
Cfr10I RCCGGY 2 cut(s) 97, 811
Cfr13I GGNCC 1 cut(s) 187
ClaI ATCGAT 1 cut(s) 168
Csp6I GTAC 4 cut(s) 445, 529, 937, 1055
CviAII CATG 4 cut(s) 708, 779, 991, 1133
CviQI GTAC 4 cut(s) 445, 529, 937, 1055
DraI TTTAAA 1 cut(s) 861
DraIII CACNNNGTG 1 cut(s) 51
EaeI YGGCCR 3 cut(s) 126, 686, 809
EagI CGGCCG 1 cut(s) 126
Eam1104I CTCTTC 3 cut(s) 150, 248, 933
EarI CTCTTC 3 cut(s) 150, 248, 933
EciI GGCGGA 3 cut(s) 75, 102, 342
EclXI CGGCCG 1 cut(s) 126
Eco130I CCWWGG 1 cut(s) 282
Eco47I GGWCC 1 cut(s) 187
Eco52I CGGCCG 1 cut(s) 126
Eco57I CTGAAG 2 cut(s) 615, 917
Eco88I CYCGRG 1 cut(s) 236
EcoO109I RGGNCCY 1 cut(s) 187
EcoT14I CCWWGG 1 cut(s) 282
ErhI CCWWGG 1 cut(s) 282
FaeI CATG 4 cut(s) 711, 782, 994, 1136
FalI AAGNNNNNCTT 2 cut(s) 129, 161
FaqI GGGAC 2 cut(s) 20, 68
FatI CATG 4 cut(s) 707, 778, 990, 1132
FbaI TGATCA 1 cut(s) 987
Fnu4HI GCNGC 4 cut(s) 279, 571, 621, 737
Fsp4HI GCNGC 4 cut(s) 279, 571, 621, 737
FspBI CTAG 1 cut(s) 1165
FspI TGCGCA 1 cut(s) 569
GlaI GCGC 3 cut(s) 335, 541, 569
GluI GCNGC 4 cut(s) 279, 571, 621, 737
GsaI CCCAGC 1 cut(s) 452
GsuI CTGGAG 1 cut(s) 446
HaeII RGCGCY 1 cut(s) 543
HaeIII GGCC 5 cut(s) 128, 551, 688, 811, 1018
HapII CCGG 4 cut(s) 98, 125, 792, 812
HhaI GCGC 3 cut(s) 336, 542, 570
Hin1II CATG 4 cut(s) 711, 782, 994, 1136
Hin6I GCGC 3 cut(s) 334, 540, 568
HinP1I GCGC 3 cut(s) 334, 540, 568
HinfI GANTC 2 cut(s) 376, 674
HpaII CCGG 4 cut(s) 98, 125, 792, 812
HphI GGTGA 2 cut(s) 385, 778
Hpy166II GTNNAC 2 cut(s) 529, 588
Hpy188I TCNGA 5 cut(s) 265, 312, 325, 627, 1048
Hpy188III TCNNGA 9 cut(s) 200, 212, 218, 318, 425, 650, 792, 991, 1102
Hpy8I GTNNAC 2 cut(s) 529, 588
HpyAV CCTTC 3 cut(s) 127, 383, 590
HpyCH4III ACNGT 2 cut(s) 536, 906
HpyCH4IV ACGT 2 cut(s) 360, 558
HpyF10VI GCNNNNNNNGC 4 cut(s) 94, 287, 352, 548
HpySE526I ACGT 2 cut(s) 360, 558
Hsp92II CATG 4 cut(s) 711, 782, 994, 1136
HspAI GCGC 3 cut(s) 334, 540, 568
Kpn2I TCCGGA 1 cut(s) 791
KroI GCCGGC 1 cut(s) 97
KroNI GCCGGC 1 cut(s) 99
Ksp22I TGATCA 1 cut(s) 987
LmnI GCTCC 2 cut(s) 38, 355
Lsp1109I GCAGC 3 cut(s) 290, 582, 723
LweI GCATC 2 cut(s) 405, 655
MaeI CTAG 1 cut(s) 1165
MaeII ACGT 2 cut(s) 360, 558
MaeIII GTNAC 2 cut(s) 1123, 1160
MbiI CCGCTC 1 cut(s) 623
MflI RGATCY 2 cut(s) 196, 1048
MhlI GDGCHC 1 cut(s) 590
MlsI TGGCCA 1 cut(s) 688
MluCI AATT 7 cut(s) 266, 393, 458, 682, 731, 836, 944
MluNI TGGCCA 1 cut(s) 688
MlyI GAGTC 1 cut(s) 668
MmeI TCCRAC 1 cut(s) 243
Mox20I TGGCCA 1 cut(s) 688
MroI TCCGGA 1 cut(s) 791
MroNI GCCGGC 1 cut(s) 97
MscI TGGCCA 1 cut(s) 688
MseI TTAA 6 cut(s) 105, 846, 860, 947, 1059, 1077
MslI CAYNNNNRTG 1 cut(s) 861
Msp20I TGGCCA 1 cut(s) 688
MspI CCGG 4 cut(s) 98, 125, 792, 812
Mva1269I GAATGC 2 cut(s) 486, 622
MvnI CGCG 1 cut(s) 336
MwoI GCNNNNNNNGC 4 cut(s) 94, 287, 352, 548
NaeI GCCGGC 1 cut(s) 99
NgoMIV GCCGGC 1 cut(s) 97
NlaIII CATG 4 cut(s) 711, 782, 994, 1136
NlaIV GGNNCC 2 cut(s) 40, 309
NmeAIII GCCGAG 2 cut(s) 54, 154
NmuCI GTSAC 2 cut(s) 1123, 1160
NsbI TGCGCA 1 cut(s) 569
PaeR7I CTCGAG 1 cut(s) 236
PagI TCATGA 1 cut(s) 990
PcsI WCGNNNNNNNCGW 1 cut(s) 198
PctI GAATGC 2 cut(s) 486, 622
PdiI GCCGGC 1 cut(s) 99
PfeI GAWTC 1 cut(s) 376
PflMI CCANNNNNTGG 1 cut(s) 51
PkrI GCNGC 4 cut(s) 280, 572, 622, 738
Ple19I CGATCG 1 cut(s) 229
PleI GAGTC 1 cut(s) 668
PpsI GAGTC 1 cut(s) 668
PpuMI RGGWCCY 1 cut(s) 187
Psp5II RGGWCCY 1 cut(s) 187
PspFI CCCAGC 1 cut(s) 448
PspN4I GGNNCC 2 cut(s) 40, 309
PspPI GGNCC 1 cut(s) 187
PspPPI RGGWCCY 1 cut(s) 187
PspXI VCTCGAGB 1 cut(s) 236
PstNI CAGNNNCTG 2 cut(s) 424, 1052
PsuI RGATCY 2 cut(s) 196, 1048
PvuI CGATCG 1 cut(s) 229
RsaI GTAC 4 cut(s) 446, 530, 938, 1056
RsaNI GTAC 4 cut(s) 445, 529, 937, 1055
RseI CAYNNNNRTG 1 cut(s) 861
SaqAI TTAA 6 cut(s) 105, 846, 860, 947, 1059, 1077
SatI GCNGC 4 cut(s) 279, 571, 621, 737
Sau96I GGNCC 1 cut(s) 187
SchI GAGTC 1 cut(s) 668
SduI GDGCHC 1 cut(s) 590
SfaNI GCATC 2 cut(s) 405, 655
Sfr274I CTCGAG 1 cut(s) 236
SinI GGWCC 1 cut(s) 187
SlaI CTCGAG 1 cut(s) 236
SmiI ATTTAAAT 1 cut(s) 861
SmiMI CAYNNNNRTG 1 cut(s) 861
SmlI CTYRAG 2 cut(s) 236, 977
SmoI CTYRAG 2 cut(s) 236, 977
Sse9I AATT 7 cut(s) 266, 393, 458, 682, 731, 836, 944
SsiI CCGC 5 cut(s) 86, 113, 353, 621, 719
SspMI CTAG 1 cut(s) 1165
StyI CCWWGG 1 cut(s) 282
SwaI ATTTAAAT 1 cut(s) 861
TaaI ACNGT 2 cut(s) 536, 906
TaiI ACGT 2 cut(s) 363, 561
TaqI TCGA 7 cut(s) 168, 192, 201, 219, 237, 672, 1084
TaqII GACCGA 1 cut(s) 194
TasI AATT 7 cut(s) 266, 393, 458, 682, 731, 836, 944
TatI WGTACW 3 cut(s) 528, 936, 1054
TauI GCSGC 1 cut(s) 623
TfiI GAWTC 1 cut(s) 376
Tru1I TTAA 6 cut(s) 105, 846, 860, 947, 1059, 1077
Tru9I TTAA 6 cut(s) 105, 846, 860, 947, 1059, 1077
TscAI CASTG 4 cut(s) 56, 309, 425, 541
TseFI GTSAC 2 cut(s) 1123, 1160
TseI GCWGC 3 cut(s) 278, 570, 736
Tsp45I GTSAC 2 cut(s) 1123, 1160
TspDTI ATGAA 4 cut(s) 734, 849, 1099, 1149
TspGWI ACGGA 1 cut(s) 51
TspRI CASTG 4 cut(s) 56, 309, 425, 541
Van91I CCANNNNNTGG 1 cut(s) 51
VneI GTGCAC 1 cut(s) 586
VpaK11BI GGWCC 1 cut(s) 187
XapI RAATTY 1 cut(s) 458
XhoI CTCGAG 1 cut(s) 236
XspI CTAG 1 cut(s) 1165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.