Prupe.6G027300_v2.0.a1

Phosducin-like protein 3

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Reverse (-)
2132488 .. 2134587
2100 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G027300.2

Sequence Viewer

Length: 759 bp
ATGGCGGACTATCACTTTGTGTACAAGGACGTGGAAGGAGCATCGACGCAGTGGGACGACATACAGAGAAAGCTAGGGAACCTACCGGCAAAGCCACCGGCGTTCAAGCCAGCACCTTTCACTCCAGCCGAGGATGAAGCCTCTCTTCCAAAGGACAAGTCCTGGATCGATGAAAAGACCGAACGGGACCTGGAAGACCTGGAAGACAATCCCGATCTCGACGATGATCGCTTCCTTGAAGATTACAGGAAGAAGAGGCTGGCTGAGTTGAGAGAAGCAGCTAAGGTTGCGAGGTTTGGATCAGTTGTGCTGATTTCAGGATCAGATTTCGTGCGGGAGGTTTCGCAAGCTCCGGCTGATGTTTGGGTTGTTGCGGTTCTCTACAAAGAAGGAATTGCGGAATGTGGAGTGTTGATGCAGTGCTTGGAAGATTTGGCTACGAAATACCCAGCTACCAAATTTGTCAAAATAATATCAACCGACTGCATCCCAAATTACCCAGATCGTAATGTTCCCACTGTTTTGGTGTACAACAATGGTGCTGTCAAAGCAAATTACGTGGGCTTGCAGAGCTTTGGCAGGAGATGCACACCTGAAGGTGTAGCATTAGTCCTCTGCCAATCAGATCCTGTGCTCAATGATGGCCAGAACGGAAATGATCGGTCAAGGAAAGCTGTGATCGACGGAGTTCGCAAGAGGTTTATAGAGAAAGTTGTGACAGAGCATGAAAATGATGACGATGGATCTTCAAGTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

253

Amino Acids

28.13

Weight (kDa)

4.75

Isoelectric Point (pI)

37.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 5, 334, 374, 398
AclWI GGATC 5 cut(s) 173, 307, 328, 620, 751
AcoI YGGCCR 1 cut(s) 643
AcsI RAATTY 1 cut(s) 458
AcuI CTGAAG 1 cut(s) 615
AdeI CACNNNGTG 1 cut(s) 19
AfaI GTAC 2 cut(s) 23, 530
AgsI TTSAA 3 cut(s) 106, 239, 750
AjiI CACGTC 1 cut(s) 31
AjnI CCWGG 3 cut(s) 161, 189, 198
AluBI AGCT 6 cut(s) 73, 281, 350, 452, 573, 674
AluI AGCT 6 cut(s) 73, 281, 350, 452, 573, 674
Alw21I GWGCWC 1 cut(s) 636
AlwI GGATC 5 cut(s) 173, 307, 328, 620, 751
AlwNI CAGNNNCTG 1 cut(s) 629
AoxI GGCC 1 cut(s) 643
ApeKI GCWGC 1 cut(s) 278
ApoI RAATTY 1 cut(s) 458
ArsI GACNNNNNNTTYG 3 cut(s) 31, 143, 175
AspS9I GGNCC 1 cut(s) 187
AvaII GGWCC 1 cut(s) 187
BalI TGGCCA 1 cut(s) 645
BbsI GAAGAC 2 cut(s) 201, 210
Bbv12I GWGCWC 1 cut(s) 636
BbvI GCAGC 1 cut(s) 290
BccI CCATC 2 cut(s) 635, 734
BciT130I CCWGG 3 cut(s) 163, 191, 200
BfaI CTAG 1 cut(s) 74
BisI GCNGC 1 cut(s) 279
BlsI GCNGC 1 cut(s) 280
Bme1390I CCNGG 3 cut(s) 163, 191, 200
Bme18I GGWCC 1 cut(s) 187
BmgBI CACGTC 1 cut(s) 31
BmgT120I GGNCC 1 cut(s) 187
BmiI GGNNCC 2 cut(s) 80, 188
BmrFI CCNGG 3 cut(s) 163, 191, 200
BmsI GCATC 4 cut(s) 50, 405, 495, 575
BpiI GAAGAC 2 cut(s) 201, 210
BpmI CTGGAG 1 cut(s) 108
Bpu10I CCTNAGC 1 cut(s) 282
Bsa29I ATCGAT 1 cut(s) 168
BsaAI YACGTR 1 cut(s) 559
BsaJI CCNNGG 1 cut(s) 129
Bse118I RCCGGY 2 cut(s) 85, 97
BseBI CCWGG 3 cut(s) 163, 191, 200
BseCI ATCGAT 1 cut(s) 168
BseDI CCNNGG 1 cut(s) 129
BseGI GGATG 2 cut(s) 139, 486
BseMII CTCAG 1 cut(s) 255
BseXI GCAGC 1 cut(s) 290
BseYI CCCAGC 1 cut(s) 448
BshFI GGCC 1 cut(s) 645
BshVI ATCGAT 1 cut(s) 168
BsiHKAI GWGCWC 1 cut(s) 636
BsiSI CCGG 3 cut(s) 86, 98, 353
BslFI GGGAC 2 cut(s) 68, 200
BsmFI GGGAC 2 cut(s) 68, 200
BsnI GGCC 1 cut(s) 645
Bsp1286I GDGCHC 1 cut(s) 636
Bsp1407I TGTACA 2 cut(s) 21, 528
BspACI CCGC 4 cut(s) 5, 334, 374, 398
BspANI GGCC 1 cut(s) 645
BspCNI CTCAG 1 cut(s) 256
BspDI ATCGAT 1 cut(s) 168
BspLI GGNNCC 2 cut(s) 80, 188
BspPI GGATC 5 cut(s) 173, 307, 328, 620, 751
BsrFI RCCGGY 2 cut(s) 85, 97
BsrGI TGTACA 2 cut(s) 21, 528
BssAI RCCGGY 2 cut(s) 85, 97
BssECI CCNNGG 1 cut(s) 129
Bst2UI CCWGG 3 cut(s) 163, 191, 200
Bst4CI ACNGT 1 cut(s) 520
Bst6I CTCTTC 2 cut(s) 150, 248
BstAPI GCANNNNNTGC 1 cut(s) 585
BstAUI TGTACA 2 cut(s) 21, 528
BstBAI YACGTR 1 cut(s) 559
BstC8I GCNNGC 4 cut(s) 111, 261, 348, 566
BstDEI CTNAG 2 cut(s) 264, 282
BstF5I GGATG 2 cut(s) 139, 486
BstMWI GCNNNNNNNGC 4 cut(s) 287, 548, 570, 585
BstNI CCWGG 3 cut(s) 163, 191, 200
BstSCI CCNGG 3 cut(s) 161, 189, 198
BstV1I GCAGC 1 cut(s) 290
BstV2I GAAGAC 2 cut(s) 201, 210
BstX2I RGATCY 2 cut(s) 625, 743
BstXI CCANNNNNNTGG 1 cut(s) 523
BstYI RGATCY 2 cut(s) 625, 743
Bsu15I ATCGAT 1 cut(s) 168
BsuRI GGCC 1 cut(s) 645
BsuTUI ATCGAT 1 cut(s) 168
BtrI CACGTC 1 cut(s) 31
BtsCI GGATG 2 cut(s) 139, 486
BtsI GCAGTG 2 cut(s) 56, 425
BtsIMutI CAGTG 3 cut(s) 56, 425, 516
Cac8I GCNNGC 4 cut(s) 111, 261, 348, 566
CaiI CAGNNNCTG 1 cut(s) 629
Cfr10I RCCGGY 2 cut(s) 85, 97
Cfr13I GGNCC 1 cut(s) 187
ClaI ATCGAT 1 cut(s) 168
CseI GACGC 1 cut(s) 55
Csp6I GTAC 2 cut(s) 22, 529
CspCI CAANNNNNGTGG 2 cut(s) 540, 575
CviAII CATG 1 cut(s) 725
CviQI GTAC 2 cut(s) 22, 529
DdeI CTNAG 2 cut(s) 264, 282
DraIII CACNNNGTG 1 cut(s) 19
EaeI YGGCCR 1 cut(s) 643
Eam1104I CTCTTC 2 cut(s) 150, 248
EarI CTCTTC 2 cut(s) 150, 248
EciI GGCGGA 1 cut(s) 20
Eco47I GGWCC 1 cut(s) 187
Eco57I CTGAAG 1 cut(s) 615
EcoO109I RGGNCCY 1 cut(s) 187
EcoRII CCWGG 3 cut(s) 161, 189, 198
FaeI CATG 1 cut(s) 728
FaiI YATR 3 cut(s) 62, 704, 726
FalI AAGNNNNNCTT 2 cut(s) 129, 161
FaqI GGGAC 2 cut(s) 68, 200
FatI CATG 1 cut(s) 724
FauI CCCGC 1 cut(s) 327
Fnu4HI GCNGC 1 cut(s) 279
FokI GGATG 2 cut(s) 146, 473
Fsp4HI GCNGC 1 cut(s) 279
FspBI CTAG 1 cut(s) 74
GluI GCNGC 1 cut(s) 279
GsaI CCCAGC 1 cut(s) 452
GsuI CTGGAG 1 cut(s) 108
HaeIII GGCC 1 cut(s) 645
HapII CCGG 3 cut(s) 86, 98, 353
HgaI GACGC 1 cut(s) 55
Hin1II CATG 1 cut(s) 728
HpaII CCGG 3 cut(s) 86, 98, 353
Hpy166II GTNNAC 2 cut(s) 22, 529
Hpy188I TCNGA 2 cut(s) 325, 625
Hpy188III TCNNGA 3 cut(s) 212, 218, 318
Hpy8I GTNNAC 2 cut(s) 22, 529
Hpy99I CGWCG 3 cut(s) 49, 224, 686
HpyAV CCTTC 3 cut(s) 29, 383, 590
HpyCH4III ACNGT 1 cut(s) 520
HpyCH4IV ACGT 2 cut(s) 30, 558
HpyCH4V TGCA 4 cut(s) 418, 486, 568, 588
HpyF10VI GCNNNNNNNGC 4 cut(s) 287, 548, 570, 585
HpyF3I CTNAG 2 cut(s) 264, 282
HpySE526I ACGT 2 cut(s) 30, 558
Hsp92II CATG 1 cut(s) 728
LmnI GCTCC 2 cut(s) 38, 355
Lsp1109I GCAGC 1 cut(s) 290
LweI GCATC 4 cut(s) 50, 405, 495, 575
MaeI CTAG 1 cut(s) 74
MaeII ACGT 2 cut(s) 30, 558
MaeIII GTNAC 1 cut(s) 715
MboII GAAGA 8 cut(s) 137, 206, 215, 251, 262, 265, 440, 738
MflI RGATCY 2 cut(s) 625, 743
MhlI GDGCHC 1 cut(s) 636
MlsI TGGCCA 1 cut(s) 645
MluCI AATT 4 cut(s) 393, 458, 493, 553
MluNI TGGCCA 1 cut(s) 645
MnlI CCTC 7 cut(s) 124, 151, 249, 285, 331, 623, 690
Mox20I TGGCCA 1 cut(s) 645
MscI TGGCCA 1 cut(s) 645
MslI CAYNNNNRTG 1 cut(s) 729
Msp20I TGGCCA 1 cut(s) 645
MspI CCGG 3 cut(s) 86, 98, 353
MspR9I CCNGG 3 cut(s) 163, 191, 200
MvaI CCWGG 3 cut(s) 163, 191, 200
MwoI GCNNNNNNNGC 4 cut(s) 287, 548, 570, 585
NlaIII CATG 1 cut(s) 728
NlaIV GGNNCC 2 cut(s) 80, 188
NmeAIII GCCGAG 1 cut(s) 154
NmuCI GTSAC 1 cut(s) 715
PfoI TCCNGGA 1 cut(s) 161
PkrI GCNGC 1 cut(s) 280
Ppu21I YACGTR 1 cut(s) 559
PpuMI RGGWCCY 1 cut(s) 187
Psp5II RGGWCCY 1 cut(s) 187
Psp6I CCWGG 3 cut(s) 161, 189, 198
PspFI CCCAGC 1 cut(s) 448
PspGI CCWGG 3 cut(s) 161, 189, 198
PspN4I GGNNCC 2 cut(s) 80, 188
PspPI GGNCC 1 cut(s) 187
PspPPI RGGWCCY 1 cut(s) 187
PstNI CAGNNNCTG 1 cut(s) 629
PsuI RGATCY 2 cut(s) 625, 743
RsaI GTAC 2 cut(s) 23, 530
RsaNI GTAC 2 cut(s) 22, 529
RseI CAYNNNNRTG 1 cut(s) 729
SatI GCNGC 1 cut(s) 279
Sau96I GGNCC 1 cut(s) 187
ScrFI CCNGG 3 cut(s) 163, 191, 200
SduI GDGCHC 1 cut(s) 636
SfaNI GCATC 4 cut(s) 50, 405, 495, 575
SgrAI CRCCGGYG 1 cut(s) 97
SinI GGWCC 1 cut(s) 187
SmiMI CAYNNNNRTG 1 cut(s) 729
Sse9I AATT 4 cut(s) 393, 458, 493, 553
SsiI CCGC 4 cut(s) 5, 334, 374, 398
SspMI CTAG 1 cut(s) 74
StyD4I CCNGG 3 cut(s) 161, 189, 198
TaaI ACNGT 1 cut(s) 520
TaiI ACGT 2 cut(s) 33, 561
TaqI TCGA 4 cut(s) 44, 168, 219, 681
TaqII GACCGA 2 cut(s) 194, 651
TasI AATT 4 cut(s) 393, 458, 493, 553
TatI WGTACW 2 cut(s) 21, 528
TscAI CASTG 3 cut(s) 56, 425, 523
TseFI GTSAC 1 cut(s) 715
TseI GCWGC 1 cut(s) 278
Tsp45I GTSAC 1 cut(s) 715
TspDTI ATGAA 3 cut(s) 150, 186, 741
TspGWI ACGGA 2 cut(s) 666, 699
TspRI CASTG 3 cut(s) 56, 425, 523
VpaK11BI GGWCC 1 cut(s) 187
XapI RAATTY 1 cut(s) 458
XspI CTAG 1 cut(s) 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.