Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0002093

Physical Location & Seq

Genomic Coordinates Forward (+)

87619578 .. 87620477

Gene Structure 900 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG660500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGGAACATCACTTTGTGTACAAAGACTTGGACGGAGCGTCGACGCAGTGGAACGATATACAGGCAAAGCTAGAGAATATTCGGAAGAAGCCACCGGCGTTCTATCCGCCAGCTTTCACTCCTTCGGAGGACGAAGCCTCTCTTCCTGAAGACAAGAAGTGGATCGAGCGAGCAGGACCTCGAAGATCTCAAAGACGATCCCGATCTCGACGACGACGATCGATTCCTCGAGGAATACAGGAGGAAGAGGCTAGCTCTCAGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Phosducin

Protein Analysis

88

Amino Acids

10.36

Weight (kDa)

9.76

Isoelectric Point (pI)

109.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002093)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14240
fragaria_vesca	FvH4_6g20890 FvH4_6g20890 FvH4_6g20890
malus_domestica	MD09G1015300.v1.1 MD17G1015400.v1.1
prunus_persica	Prupe.3G302500_v2.0.a1 Prupe.6G027300_v2.0.a1 Prupe.6G027300_v2.0.a1
pyrus_communis	pycom111g01240 pycom17g01260
rosa_chinensis	RchiOBHm_Chr1g0359641 RchiOBHm_Chr1g0359651 RchiOBHm_Chr2g0174741 RchiOBHm_Chr3g0477231 RchiOBHm_Chr3g0477241 RchiOBHm_Chr6g0252661
rosa_laevigata	RLG00000023735 RLG00000035432
rosa_multiflora	Rmu_sc0030318.1_g000001 Rmu_ssc0000313.1_g000003
rosa_roxburghii	Rroxscaffold_6G00404300 Rroxscaffold_6G00404780
rosa_rugosa	Rorug02G0109900 Rorug03G0158900 Rorug05G0567300 Rorug07G0186500
rosa_samantha	Rh1AG466100 Rh2AG497000 Rh2AG660500 Rh2BG671300 Rh2CG483100 Rh3AG209500 Rh3BG242800 Rh3BG242900 Rh3CG237000 Rh3DG236100 Rh4AG255500 Rh4BG260900 Rh6BG064900 Rh7BG354100
rosa_wichuraiana	Rw0G000240 Rw0G021750 Rw2G054110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	228
AccI	GTMKAC	1 cut(s)	41
AciI	CCGC	1 cut(s)	107
AclWI	GGATC	2 cut(s)	170, 192
AcuI	CTGAAG	1 cut(s)	168
AdeI	CACNNNGTG	1 cut(s)	16
AfaI	GTAC	1 cut(s)	20
AhdI	GACNNNNNGTC	1 cut(s)	37
AluBI	AGCT	3 cut(s)	70, 113, 255
AluI	AGCT	3 cut(s)	70, 113, 255
AlwI	GGATC	2 cut(s)	170, 192
Ama87I	CYCGRG	1 cut(s)	228
AspS9I	GGNCC	1 cut(s)	176
AsuNHI	GCTAGC	1 cut(s)	251
AvaI	CYCGRG	1 cut(s)	228
AvaII	GGWCC	1 cut(s)	176
BbsI	GAAGAC	1 cut(s)	156
BfaI	CTAG	2 cut(s)	71, 252
BglII	AGATCT	1 cut(s)	185
Bme18I	GGWCC	1 cut(s)	176
BmeRI	GACNNNNNGTC	1 cut(s)	37
BmeT110I	CYCGRG	1 cut(s)	228
BmgT120I	GGNCC	1 cut(s)	176
BmtI	GCTAGC	1 cut(s)	255
BpiI	GAAGAC	1 cut(s)	156
BplI	GAGNNNNNCTC	1 cut(s)	239
Bsa29I	ATCGAT	1 cut(s)	221
BsaBI	GATNNNNATC	1 cut(s)	202
Bse118I	RCCGGY	1 cut(s)	94
Bse8I	GATNNNNATC	1 cut(s)	202
BseCI	ATCGAT	1 cut(s)	221
BseJI	GATNNNNATC	1 cut(s)	202
Bsh1285I	CGRYCG	1 cut(s)	221
BshVI	ATCGAT	1 cut(s)	221
BsiEI	CGRYCG	1 cut(s)	221
BsiHKCI	CYCGRG	1 cut(s)	228
BsiSI	CCGG	1 cut(s)	95
BsoBI	CYCGRG	1 cut(s)	228
Bsp1407I	TGTACA	1 cut(s)	18
Bsp143I	GATC	5 cut(s)	162, 185, 197, 203, 218
BspACI	CCGC	1 cut(s)	107
BspDI	ATCGAT	1 cut(s)	221
BspOI	GCTAGC	1 cut(s)	255
BspPI	GGATC	2 cut(s)	170, 192
BsrFI	RCCGGY	1 cut(s)	94
BsrGI	TGTACA	1 cut(s)	18
BssAI	RCCGGY	1 cut(s)	94
BssMI	GATC	5 cut(s)	162, 185, 197, 203, 218
Bst6I	CTCTTC	2 cut(s)	147, 240
BstAUI	TGTACA	1 cut(s)	18
BstC8I	GCNNGC	3 cut(s)	111, 171, 253
BstDEI	CTNAG	1 cut(s)	258
BstKTI	GATC	5 cut(s)	165, 188, 200, 206, 221
BstMBI	GATC	5 cut(s)	162, 185, 197, 203, 218
BstMCI	CGRYCG	1 cut(s)	221
BstV2I	GAAGAC	1 cut(s)	156
BstX2I	RGATCY	1 cut(s)	185
BstYI	RGATCY	1 cut(s)	185
Bsu15I	ATCGAT	1 cut(s)	221
BsuTUI	ATCGAT	1 cut(s)	221
BtsI	GCAGTG	1 cut(s)	53
BtsIMutI	CAGTG	1 cut(s)	53
Cac8I	GCNNGC	3 cut(s)	111, 171, 253
Cfr10I	RCCGGY	1 cut(s)	94
Cfr13I	GGNCC	1 cut(s)	176
ClaI	ATCGAT	1 cut(s)	221
CseI	GACGC	2 cut(s)	27, 52
Csp6I	GTAC	1 cut(s)	19
CviJI	RGCY	6 cut(s)	70, 91, 113, 137, 251, 255
CviKI_1	RGCY	6 cut(s)	70, 91, 113, 137, 251, 255
CviQI	GTAC	1 cut(s)	19
DdeI	CTNAG	1 cut(s)	258
DpnI	GATC	5 cut(s)	164, 187, 199, 205, 220
DpnII	GATC	5 cut(s)	162, 185, 197, 203, 218
DraIII	CACNNNGTG	1 cut(s)	16
DriI	GACNNNNNGTC	1 cut(s)	37
Eam1104I	CTCTTC	2 cut(s)	147, 240
Eam1105I	GACNNNNNGTC	1 cut(s)	37
EarI	CTCTTC	2 cut(s)	147, 240
EciI	GGCGGA	1 cut(s)	96
Eco47I	GGWCC	1 cut(s)	176
Eco57I	CTGAAG	1 cut(s)	168
Eco88I	CYCGRG	1 cut(s)	228
EcoO109I	RGGNCCY	1 cut(s)	176
FaiI	YATR	1 cut(s)	59
FalI	AAGNNNNNCTT	2 cut(s)	126, 158
FblI	GTMKAC	1 cut(s)	41
FspBI	CTAG	2 cut(s)	71, 252
HapII	CCGG	1 cut(s)	95
HgaI	GACGC	2 cut(s)	27, 52
HincII	GTYRAC	1 cut(s)	42
HindII	GTYRAC	1 cut(s)	42
HinfI	GANTC	1 cut(s)	223
HpaII	CCGG	1 cut(s)	95
Hpy166II	GTNNAC	2 cut(s)	19, 42
Hpy188I	TCNGA	3 cut(s)	84, 127, 261
Hpy188III	TCNNGA	3 cut(s)	146, 201, 207
Hpy8I	GTNNAC	2 cut(s)	19, 42
Hpy99I	CGWCG	5 cut(s)	43, 46, 213, 216, 219
HpyAV	CCTTC	1 cut(s)	132
HpyF3I	CTNAG	1 cut(s)	258
Kzo9I	GATC	5 cut(s)	162, 185, 197, 203, 218
LmnI	GCTCC	1 cut(s)	35
LpnPI	CCDG	6 cut(s)	47, 108, 123, 159, 159, 224
MaeI	CTAG	2 cut(s)	71, 252
MalI	GATC	5 cut(s)	164, 187, 199, 205, 220
MboI	GATC	5 cut(s)	162, 185, 197, 203, 218
MboII	GAAGA	5 cut(s)	97, 134, 161, 195, 257
MflI	RGATCY	1 cut(s)	185
MluCI	AATT	1 cut(s)	262
MnlI	CCTC	7 cut(s)	121, 148, 189, 224, 235, 237, 241
MspI	CCGG	1 cut(s)	95
NdeII	GATC	5 cut(s)	162, 185, 197, 203, 218
NheI	GCTAGC	1 cut(s)	251
PaeR7I	CTCGAG	1 cut(s)	228
PcsI	WCGNNNNNNNCGW	1 cut(s)	214
PfeI	GAWTC	1 cut(s)	223
Ple19I	CGATCG	1 cut(s)	221
PpuMI	RGGWCCY	1 cut(s)	176
Psp5II	RGGWCCY	1 cut(s)	176
PspPI	GGNCC	1 cut(s)	176
PspPPI	RGGWCCY	1 cut(s)	176
PspXI	VCTCGAGB	1 cut(s)	228
PsuI	RGATCY	1 cut(s)	185
PvuI	CGATCG	1 cut(s)	221
RsaI	GTAC	1 cut(s)	20
RsaNI	GTAC	1 cut(s)	19
SalI	GTCGAC	1 cut(s)	40
Sau3AI	GATC	5 cut(s)	162, 185, 197, 203, 218
Sau96I	GGNCC	1 cut(s)	176
SetI	ASST	4 cut(s)	72, 115, 181, 257
Sfr274I	CTCGAG	1 cut(s)	228
SgrAI	CRCCGGYG	1 cut(s)	94
SgrDI	CGTCGACG	1 cut(s)	40
SinI	GGWCC	1 cut(s)	176
SlaI	CTCGAG	1 cut(s)	228
SmlI	CTYRAG	1 cut(s)	228
SmoI	CTYRAG	1 cut(s)	228
Sse9I	AATT	1 cut(s)	262
SsiI	CCGC	1 cut(s)	107
SspI	AATATT	1 cut(s)	79
SspMI	CTAG	2 cut(s)	71, 252
TaqI	TCGA	6 cut(s)	41, 165, 181, 208, 221, 229
TasI	AATT	1 cut(s)	262
TatI	WGTACW	1 cut(s)	18
TfiI	GAWTC	1 cut(s)	223
TscAI	CASTG	1 cut(s)	53
TspGWI	ACGGA	1 cut(s)	48
TspRI	CASTG	1 cut(s)	53
VpaK11BI	GGWCC	1 cut(s)	176
XhoI	CTCGAG	1 cut(s)	228
XmiI	GTMKAC	1 cut(s)	41
XspI	CTAG	2 cut(s)	71, 252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.