FvH4_6g20890

Phosducin-like protein 3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0002093
Physical Location & Seq
Reverse (-)
14380994 .. 14385116
4123 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g20890.t1

Sequence Viewer

Length: 759 bp
ATGGGGGACTATCACTATATCTACAAGGACTTGGACGGAGCCTCTACCCAGTGGGACGATATTCAGGCCAAGCTTGGCAATCTTCCTCCGAAGAAGCCGGCGTTTAAGCCCCCGGCCTTCACTCCGGCCGAGGACGAAGCCTCCGCTCCTAAAGACAAGTCGTGGATCGATGACAAGACCGAACAGGACCTCGAAGATCTCGAAGACGATCCCGATCTCGACGACGATCGCTTCCTCGAGGAATACAGGAGGAAGAGGCTGTCTGAATTGAGAGAAGCAGCTAAGGTTGCGAGGTTTGGATCAGTGGTTCCAATCTCGGGATCAGATTTCGTACGTGAGGTTTCTCAAGCTCCACCAGACGTTTGGGTGGTGGTGATTCTTTATAAAGAAGGAATTGCGGAATGTGGATTGTTGATGCAGTGTTTGGAAGATTTGGCAACTAAGTACCCGGCAACAAAATTTGTGAAAATAATTTCCACAGACTGCATTCCTAATTATCCGGATCGCAATCTTCCCACTTTATTAGTTTACAACAGTGGCGCTGTCAAAGCCAATCATGTTGGGATGCGCAGCTTTGGTCGGAGATGCACACCTGAAGGTGTGGCATTAGTTCTCTGCCAATCAGATCCTGTGCTTAATGATGGGCAGAGTGCTAATGGTCATTCAAGGGAAGCCGTGATCGAGGGAGTTCGCAAGAGGTTCATAGAGAAAGTTGTGACACAACATGAAGATAAGGACGATGGATATTCAAGTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Phosducin

Protein Analysis

253

Amino Acids

28.2

Weight (kDa)

4.79

Isoelectric Point (pI)

44.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Phosducin PF02114 70 - 188 2.4e-15 Phosducin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 384
AbsI CCTCGAGG 1 cut(s) 236
Acc16I TGCGCA 1 cut(s) 569
AccBSI CCGCTC 1 cut(s) 146
AccIII TCCGGA 1 cut(s) 499
AciI CCGC 2 cut(s) 144, 398
AclWI GGATC 6 cut(s) 173, 203, 307, 328, 510, 620
AcoI YGGCCR 1 cut(s) 126
AcsI RAATTY 1 cut(s) 458
AcuI CTGAAG 1 cut(s) 615
AfaI GTAC 2 cut(s) 333, 446
AfiI CCNNNNNNNGG 1 cut(s) 317
AgsI TTSAA 2 cut(s) 666, 750
AloI GAACNNNNNNTCC 2 cut(s) 291, 323
AluBI AGCT 4 cut(s) 73, 281, 350, 573
AluI AGCT 4 cut(s) 73, 281, 350, 573
AlwI GGATC 6 cut(s) 173, 203, 307, 328, 510, 620
AlwNI CAGNNNCTG 1 cut(s) 629
Ama87I CYCGRG 2 cut(s) 236, 316
Aor13HI TCCGGA 1 cut(s) 499
AoxI GGCC 3 cut(s) 66, 114, 126
ApeKI GCWGC 2 cut(s) 278, 570
ApoI RAATTY 1 cut(s) 458
AspLEI GCGC 2 cut(s) 542, 570
AspS9I GGNCC 1 cut(s) 187
AsuC2I CCSGG 2 cut(s) 113, 449
AsuHPI GGTGA 1 cut(s) 385
AvaI CYCGRG 2 cut(s) 236, 316
AvaII GGWCC 1 cut(s) 187
BbsI GAAGAC 1 cut(s) 210
BbvI GCAGC 2 cut(s) 290, 582
BccI CCATC 2 cut(s) 635, 734
BceAI ACGGC 1 cut(s) 659
BcnI CCSGG 2 cut(s) 113, 449
BfoI RGCGCY 1 cut(s) 543
BglII AGATCT 1 cut(s) 196
BisI GCNGC 2 cut(s) 279, 571
BlsI GCNGC 2 cut(s) 280, 572
Bme1390I CCNGG 2 cut(s) 113, 449
Bme18I GGWCC 1 cut(s) 187
BmeT110I CYCGRG 2 cut(s) 236, 316
BmgT120I GGNCC 1 cut(s) 187
BmiI GGNNCC 2 cut(s) 40, 309
BmrFI CCNGG 2 cut(s) 113, 449
BmrI ACTGGG 1 cut(s) 43
BmsI GCATC 3 cut(s) 405, 555, 575
BmuI ACTGGG 1 cut(s) 43
BpiI GAAGAC 1 cut(s) 210
Bpu10I CCTNAGC 1 cut(s) 282
BpuEI CTTGAG 1 cut(s) 330
BpuMI CCSGG 2 cut(s) 113, 449
Bsa29I ATCGAT 1 cut(s) 168
BsaAI YACGTR 1 cut(s) 335
BsaBI GATNNNNATC 2 cut(s) 213, 507
BsaJI CCNNGG 2 cut(s) 111, 129
BsaWI WCCGGW 1 cut(s) 499
BsaXI ACNNNNNCTCC 2 cut(s) 125, 155
Bsc4I CCNNNNNNNGG 1 cut(s) 317
Bse118I RCCGGY 1 cut(s) 97
Bse1I ACTGG 1 cut(s) 49
Bse8I GATNNNNATC 2 cut(s) 213, 507
BseAI TCCGGA 1 cut(s) 499
BseCI ATCGAT 1 cut(s) 168
BseDI CCNNGG 2 cut(s) 111, 129
BseGI GGATG 1 cut(s) 570
BseJI GATNNNNATC 2 cut(s) 213, 507
BseLI CCNNNNNNNGG 1 cut(s) 317
BseNI ACTGG 1 cut(s) 49
BseX3I CGGCCG 1 cut(s) 126
BseXI GCAGC 2 cut(s) 290, 582
Bsh1285I CGRYCG 2 cut(s) 129, 229
BshFI GGCC 3 cut(s) 68, 116, 128
BshVI ATCGAT 1 cut(s) 168
BsiEI CGRYCG 2 cut(s) 129, 229
BsiHKCI CYCGRG 2 cut(s) 236, 316
BsiSI CCGG 5 cut(s) 98, 113, 125, 449, 500
BsiWI CGTACG 1 cut(s) 331
BslFI GGGAC 2 cut(s) 20, 68
BslI CCNNNNNNNGG 1 cut(s) 317
BsmFI GGGAC 2 cut(s) 20, 68
BsmI GAATGC 1 cut(s) 486
BsnI GGCC 3 cut(s) 68, 116, 128
BsoBI CYCGRG 2 cut(s) 236, 316
Bsp13I TCCGGA 1 cut(s) 499
BspACI CCGC 2 cut(s) 144, 398
BspANI GGCC 3 cut(s) 68, 116, 128
BspDI ATCGAT 1 cut(s) 168
BspEI TCCGGA 1 cut(s) 499
BspLI GGNNCC 2 cut(s) 40, 309
BspPI GGATC 6 cut(s) 173, 203, 307, 328, 510, 620
BsrBI CCGCTC 1 cut(s) 146
BsrFI RCCGGY 1 cut(s) 97
BsrI ACTGG 1 cut(s) 49
BssAI RCCGGY 1 cut(s) 97
BssECI CCNNGG 2 cut(s) 111, 129
Bst4CI ACNGT 1 cut(s) 536
Bst6I CTCTTC 1 cut(s) 248
BstBAI YACGTR 1 cut(s) 335
BstC8I GCNNGC 1 cut(s) 99
BstDEI CTNAG 2 cut(s) 282, 441
BstF5I GGATG 1 cut(s) 570
BstH2I RGCGCY 1 cut(s) 543
BstHHI GCGC 2 cut(s) 542, 570
BstMCI CGRYCG 2 cut(s) 129, 229
BstMWI GCNNNNNNNGC 2 cut(s) 287, 548
BstSCI CCNGG 2 cut(s) 111, 447
BstV1I GCAGC 2 cut(s) 290, 582
BstV2I GAAGAC 1 cut(s) 210
BstX2I RGATCY 2 cut(s) 196, 625
BstXI CCANNNNNNTGG 1 cut(s) 363
BstYI RGATCY 2 cut(s) 196, 625
BstZI CGGCCG 1 cut(s) 126
Bsu15I ATCGAT 1 cut(s) 168
BsuRI GGCC 3 cut(s) 68, 116, 128
BsuTUI ATCGAT 1 cut(s) 168
BtsCI GGATG 1 cut(s) 570
BtsI GCAGTG 1 cut(s) 425
BtsIMutI CAGTG 4 cut(s) 56, 309, 425, 541
Cac8I GCNNGC 1 cut(s) 99
CaiI CAGNNNCTG 1 cut(s) 629
CfoI GCGC 2 cut(s) 542, 570
Cfr10I RCCGGY 1 cut(s) 97
Cfr13I GGNCC 1 cut(s) 187
ClaI ATCGAT 1 cut(s) 168
Csp6I GTAC 2 cut(s) 332, 445
CviAII CATG 2 cut(s) 557, 725
CviQI GTAC 2 cut(s) 332, 445
DdeI CTNAG 2 cut(s) 282, 441
EaeI YGGCCR 1 cut(s) 126
EagI CGGCCG 1 cut(s) 126
Eam1104I CTCTTC 1 cut(s) 248
EarI CTCTTC 1 cut(s) 248
EclXI CGGCCG 1 cut(s) 126
Eco47I GGWCC 1 cut(s) 187
Eco52I CGGCCG 1 cut(s) 126
Eco57I CTGAAG 1 cut(s) 615
Eco88I CYCGRG 2 cut(s) 236, 316
EcoO109I RGGNCCY 1 cut(s) 187
FaeI CATG 2 cut(s) 560, 728
FaiI YATR 5 cut(s) 18, 384, 558, 704, 726
FaqI GGGAC 2 cut(s) 20, 68
FatI CATG 2 cut(s) 556, 724
Fnu4HI GCNGC 2 cut(s) 279, 571
FokI GGATG 1 cut(s) 577
Fsp4HI GCNGC 2 cut(s) 279, 571
FspI TGCGCA 1 cut(s) 569
GlaI GCGC 2 cut(s) 541, 569
GluI GCNGC 2 cut(s) 279, 571
HaeII RGCGCY 1 cut(s) 543
HaeIII GGCC 3 cut(s) 68, 116, 128
HapII CCGG 5 cut(s) 98, 113, 125, 449, 500
HhaI GCGC 2 cut(s) 542, 570
Hin1II CATG 2 cut(s) 560, 728
Hin6I GCGC 2 cut(s) 540, 568
HinP1I GCGC 2 cut(s) 540, 568
HindIII AAGCTT 1 cut(s) 71
HinfI GANTC 1 cut(s) 376
HpaII CCGG 5 cut(s) 98, 113, 125, 449, 500
HphI GGTGA 1 cut(s) 385
Hpy166II GTNNAC 1 cut(s) 529
Hpy188I TCNGA 5 cut(s) 90, 265, 325, 582, 625
Hpy188III TCNNGA 5 cut(s) 200, 212, 218, 318, 500
Hpy8I GTNNAC 1 cut(s) 529
Hpy99I CGWCG 2 cut(s) 224, 227
HpyAV CCTTC 3 cut(s) 127, 383, 590
HpyCH4III ACNGT 1 cut(s) 536
HpyCH4IV ACGT 2 cut(s) 334, 360
HpyCH4V TGCA 3 cut(s) 418, 486, 588
HpyF10VI GCNNNNNNNGC 2 cut(s) 287, 548
HpyF3I CTNAG 2 cut(s) 282, 441
HpySE526I ACGT 2 cut(s) 334, 360
Hsp92II CATG 2 cut(s) 560, 728
HspAI GCGC 2 cut(s) 540, 568
Kpn2I TCCGGA 1 cut(s) 499
KroI GCCGGC 1 cut(s) 97
KroNI GCCGGC 1 cut(s) 99
LmnI GCTCC 3 cut(s) 38, 151, 355
Lsp1109I GCAGC 2 cut(s) 290, 582
LweI GCATC 3 cut(s) 405, 555, 575
MaeII ACGT 2 cut(s) 334, 360
MaeIII GTNAC 1 cut(s) 715
MbiI CCGCTC 1 cut(s) 146
MboII GAAGA 8 cut(s) 74, 103, 206, 215, 265, 440, 503, 740
MflI RGATCY 2 cut(s) 196, 625
MluCI AATT 5 cut(s) 266, 393, 458, 471, 493
MmeI TCCRAC 1 cut(s) 560
MroI TCCGGA 1 cut(s) 499
MroNI GCCGGC 1 cut(s) 97
MseI TTAA 2 cut(s) 105, 636
MspI CCGG 5 cut(s) 98, 113, 125, 449, 500
MspR9I CCNGG 2 cut(s) 113, 449
Mva1269I GAATGC 1 cut(s) 486
MwoI GCNNNNNNNGC 2 cut(s) 287, 548
NaeI GCCGGC 1 cut(s) 99
NciI CCSGG 2 cut(s) 113, 449
NgoMIV GCCGGC 1 cut(s) 97
NlaIII CATG 2 cut(s) 560, 728
NlaIV GGNNCC 2 cut(s) 40, 309
NmeAIII GCCGAG 1 cut(s) 154
NmuCI GTSAC 1 cut(s) 715
NsbI TGCGCA 1 cut(s) 569
PaeR7I CTCGAG 1 cut(s) 236
PcsI WCGNNNNNNNCGW 1 cut(s) 198
PctI GAATGC 1 cut(s) 486
PdiI GCCGGC 1 cut(s) 99
PfeI GAWTC 1 cut(s) 376
Pfl23II CGTACG 1 cut(s) 331
PkrI GCNGC 2 cut(s) 280, 572
Ple19I CGATCG 1 cut(s) 229
Ppu21I YACGTR 1 cut(s) 335
PpuMI RGGWCCY 1 cut(s) 187
PsiI TTATAA 1 cut(s) 384
Psp5II RGGWCCY 1 cut(s) 187
PspLI CGTACG 1 cut(s) 331
PspN4I GGNNCC 2 cut(s) 40, 309
PspPI GGNCC 1 cut(s) 187
PspPPI RGGWCCY 1 cut(s) 187
PspXI VCTCGAGB 1 cut(s) 236
PstNI CAGNNNCTG 1 cut(s) 629
PsuI RGATCY 2 cut(s) 196, 625
PvuI CGATCG 1 cut(s) 229
RsaI GTAC 2 cut(s) 333, 446
RsaNI GTAC 2 cut(s) 332, 445
SaqAI TTAA 2 cut(s) 105, 636
SatI GCNGC 2 cut(s) 279, 571
Sau96I GGNCC 1 cut(s) 187
ScrFI CCNGG 2 cut(s) 113, 449
SfaNI GCATC 3 cut(s) 405, 555, 575
Sfr274I CTCGAG 1 cut(s) 236
SinI GGWCC 1 cut(s) 187
SlaI CTCGAG 1 cut(s) 236
SmlI CTYRAG 2 cut(s) 236, 345
SmoI CTYRAG 2 cut(s) 236, 345
Sse9I AATT 5 cut(s) 266, 393, 458, 471, 493
SsiI CCGC 2 cut(s) 144, 398
StyD4I CCNGG 2 cut(s) 111, 447
TaaI ACNGT 1 cut(s) 536
TaiI ACGT 2 cut(s) 337, 363
TaqI TCGA 6 cut(s) 168, 192, 201, 219, 237, 681
TaqII GACCGA 1 cut(s) 194
TasI AATT 5 cut(s) 266, 393, 458, 471, 493
TfiI GAWTC 1 cut(s) 376
Tru1I TTAA 2 cut(s) 105, 636
Tru9I TTAA 2 cut(s) 105, 636
TscAI CASTG 4 cut(s) 56, 309, 425, 541
TseFI GTSAC 1 cut(s) 715
TseI GCWGC 2 cut(s) 278, 570
Tsp45I GTSAC 1 cut(s) 715
TspDTI ATGAA 2 cut(s) 691, 741
TspGWI ACGGA 1 cut(s) 51
TspRI CASTG 4 cut(s) 56, 309, 425, 541
VpaK11BI GGWCC 1 cut(s) 187
XapI RAATTY 1 cut(s) 458
XcmI CCANNNNNNNNNTGG 1 cut(s) 360
XhoI CTCGAG 1 cut(s) 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.