RchiOBHm_Chr1g0359641

Phosducin-like protein 3

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Reverse (-)
51539984 .. 51540541
558 bp
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UTR
Exon/CDS
Intron
PRQ58467

Sequence Viewer

Length: 180 bp
ATGCAGTGTCTGGAAGATTTGGCAACTAAGTACTCGGCAACCAAATTTGTGAAAATAATATCAACATACTGCATTCCTAACTACCCGGATCATAATCTTCCCACTCTTTTAGTGTACAACAATGGCACTGTCAAAGCCAATCACATTGGGTTGCGCAACTTTGGTTGGAGGTGCACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

59

Amino Acids

6.75

Weight (kDa)

8.93

Isoelectric Point (pI)

31.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 155
AclWI GGATC 1 cut(s) 96
AcsI RAATTY 1 cut(s) 44
AfaI GTAC 2 cut(s) 32, 116
Alw21I GWGCWC 1 cut(s) 176
Alw44I GTGCAC 1 cut(s) 172
AlwI GGATC 1 cut(s) 96
AlwNI CAGNNNCTG 1 cut(s) 10
ApaLI GTGCAC 1 cut(s) 172
ApoI RAATTY 1 cut(s) 44
AspLEI GCGC 1 cut(s) 156
AsuC2I CCSGG 1 cut(s) 86
BaeGI GKGCMC 1 cut(s) 176
Bbv12I GWGCWC 1 cut(s) 176
BcnI CCSGG 1 cut(s) 86
BmcAI AGTACT 1 cut(s) 32
Bme1390I CCNGG 1 cut(s) 86
BmrFI CCNGG 1 cut(s) 86
BpuMI CCSGG 1 cut(s) 86
BsaBI GATNNNNATC 1 cut(s) 93
Bse8I GATNNNNATC 1 cut(s) 93
BseJI GATNNNNATC 1 cut(s) 93
BseSI GKGCMC 1 cut(s) 176
BsiHKAI GWGCWC 1 cut(s) 176
BsiSI CCGG 1 cut(s) 86
BsmI GAATGC 1 cut(s) 72
Bsp1286I GDGCHC 1 cut(s) 176
Bsp1407I TGTACA 1 cut(s) 114
Bsp143I GATC 1 cut(s) 88
BspPI GGATC 1 cut(s) 96
BsrGI TGTACA 1 cut(s) 114
BssMI GATC 1 cut(s) 88
Bst4CI ACNGT 1 cut(s) 130
BstAUI TGTACA 1 cut(s) 114
BstDEI CTNAG 1 cut(s) 27
BstHHI GCGC 1 cut(s) 156
BstKTI GATC 1 cut(s) 91
BstMBI GATC 1 cut(s) 88
BstSCI CCNGG 1 cut(s) 84
BstSLI GKGCMC 1 cut(s) 176
BtsI GCAGTG 1 cut(s) 11
BtsIMutI CAGTG 2 cut(s) 11, 126
CaiI CAGNNNCTG 1 cut(s) 10
CfoI GCGC 1 cut(s) 156
Csp6I GTAC 2 cut(s) 31, 115
CviJI RGCY 1 cut(s) 137
CviKI_1 RGCY 1 cut(s) 137
CviQI GTAC 2 cut(s) 31, 115
DdeI CTNAG 1 cut(s) 27
DpnI GATC 1 cut(s) 90
DpnII GATC 1 cut(s) 88
FaiI YATR 2 cut(s) 67, 93
FspI TGCGCA 1 cut(s) 155
GlaI GCGC 1 cut(s) 155
HapII CCGG 1 cut(s) 86
HhaI GCGC 1 cut(s) 156
Hin6I GCGC 1 cut(s) 154
HinP1I GCGC 1 cut(s) 154
HpaII CCGG 1 cut(s) 86
Hpy166II GTNNAC 2 cut(s) 115, 174
Hpy188III TCNNGA 1 cut(s) 11
Hpy8I GTNNAC 2 cut(s) 115, 174
HpyCH4III ACNGT 1 cut(s) 130
HpyCH4V TGCA 3 cut(s) 4, 72, 174
HpyF3I CTNAG 1 cut(s) 27
HspAI GCGC 1 cut(s) 154
Kzo9I GATC 1 cut(s) 88
LpnPI CCDG 1 cut(s) 99
MalI GATC 1 cut(s) 90
MboI GATC 1 cut(s) 88
MboII GAAGA 2 cut(s) 26, 89
MhlI GDGCHC 1 cut(s) 176
MluCI AATT 1 cut(s) 44
MmeI TCCRAC 1 cut(s) 146
MnlI CCTC 1 cut(s) 162
MspI CCGG 1 cut(s) 86
MspR9I CCNGG 1 cut(s) 86
Mva1269I GAATGC 1 cut(s) 72
NciI CCSGG 1 cut(s) 86
NdeII GATC 1 cut(s) 88
NmeAIII GCCGAG 1 cut(s) 14
NsbI TGCGCA 1 cut(s) 155
PctI GAATGC 1 cut(s) 72
PstNI CAGNNNCTG 1 cut(s) 10
RsaI GTAC 2 cut(s) 32, 116
RsaNI GTAC 2 cut(s) 31, 115
Sau3AI GATC 1 cut(s) 88
ScaI AGTACT 1 cut(s) 32
ScrFI CCNGG 1 cut(s) 86
SduI GDGCHC 1 cut(s) 176
SetI ASST 2 cut(s) 173, 179
SgeI CNNG 4 cut(s) 23, 46, 97, 98
Sse9I AATT 1 cut(s) 44
StyD4I CCNGG 1 cut(s) 84
TaaI ACNGT 1 cut(s) 130
TasI AATT 1 cut(s) 44
TatI WGTACW 2 cut(s) 30, 114
TscAI CASTG 1 cut(s) 133
TspRI CASTG 1 cut(s) 133
VneI GTGCAC 1 cut(s) 172
XapI RAATTY 1 cut(s) 44
ZrmI AGTACT 1 cut(s) 32
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.