Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0002093

Physical Location & Seq

Genomic Coordinates Reverse (-)

859889 .. 861289

Gene Structure 1401 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g01260.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGGCGGACTATCACTTTGTGTACAAGGACTTGGAGGGAGCATCGACTCAGTGGGACGACATACAGAGAAAGCTCGGGAACCTTCCCGCGAAGCCACCGCCGTTCAAGCCGCCGAAGTTCACACCGGCTCAGGACGAAGCCTCCCTTCCCAAAGACAAGTCCTGGATCGATGAGAAATCCGAGCAGGACCTCGAAGACCTCGAGGACAATCCCGATCTCGACGACGATCGCTTCCTCGAAGAATACAGGTCCTCACAGAAGAAGAGGCTGGCGGAGCTGAGAGAAGCAGCCAAAGTTGCGAGGTTCGGATCGGTGGTGCCGATTTCGGGATCGGATTTCGTGCGGGAGGTGTCTCAGGCGCCGCCGGATGTTTGGGTGGTTGTGATTTTGTACAAAGAAGGAATCGCCGAGTGCGGGGTTTTGATGCAGTGTATGGAAGATTTGGCGACGAAATATCCCGCTACAAAATTCGTCAAGATAATATCGACGGACTGCATTCCGAACTACCCTGATCGGAATGTTCCGACTGTTTTAGTATACAACAGTGGGAATGTCAAAGCTAACTACGTCGGCTTGCAGAGCTTTGGCCGCAGATGCACACCTGAAGGTGTGGCATTACTTCTGTGCCAATCAGATCCTGTACTTAATGATGGCCTGAGTGGAAATGATCAGTCGAGGCAAGCTGTGATCGATGGAGTTCGCAGGAGGTTTATAGAGAAGGTTGTGACTGAGCATGAAGACGTTGATGATGGGTCCTCGAGCGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Phosducin

Protein Analysis

256

Amino Acids

28.54

Weight (kDa)

4.69

Isoelectric Point (pI)

48.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002093)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14240
fragaria_vesca	FvH4_6g20890 FvH4_6g20890 FvH4_6g20890
malus_domestica	MD09G1015300.v1.1 MD17G1015400.v1.1
prunus_persica	Prupe.3G302500_v2.0.a1 Prupe.6G027300_v2.0.a1 Prupe.6G027300_v2.0.a1
pyrus_communis	pycom111g01240 pycom17g01260
rosa_chinensis	RchiOBHm_Chr1g0359641 RchiOBHm_Chr1g0359651 RchiOBHm_Chr2g0174741 RchiOBHm_Chr3g0477231 RchiOBHm_Chr3g0477241 RchiOBHm_Chr6g0252661
rosa_laevigata	RLG00000023735 RLG00000035432
rosa_multiflora	Rmu_sc0030318.1_g000001 Rmu_ssc0000313.1_g000003
rosa_roxburghii	Rroxscaffold_6G00404300 Rroxscaffold_6G00404780
rosa_rugosa	Rorug02G0109900 Rorug03G0158900 Rorug05G0567300 Rorug07G0186500
rosa_samantha	Rh1AG466100 Rh2AG497000 Rh2AG660500 Rh2BG671300 Rh2CG483100 Rh3AG209500 Rh3BG242800 Rh3BG242900 Rh3CG237000 Rh3DG236100 Rh4AG255500 Rh4BG260900 Rh6BG064900 Rh7BG354100
rosa_wichuraiana	Rw0G000240 Rw0G021750 Rw2G054110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	200
AccB1I	GGYRCC	2 cut(s)	316, 358
AccI	GTMKAC	1 cut(s)	537
AccII	CGCG	1 cut(s)	89
AclWI	GGATC	4 cut(s)	173, 316, 337, 629
AcoI	YGGCCR	1 cut(s)	586
AcsI	RAATTY	1 cut(s)	467
AcuI	CTGAAG	1 cut(s)	624
AcyI	GRCGYC	1 cut(s)	359
AdeI	CACNNNGTG	1 cut(s)	19
AfaI	GTAC	3 cut(s)	23, 392, 642
AfiI	CCNNNNNNNGG	2 cut(s)	326, 414
AgsI	TTSAA	1 cut(s)	106
AjnI	CCWGG	1 cut(s)	161
AluBI	AGCT	5 cut(s)	73, 277, 560, 582, 683
AluI	AGCT	5 cut(s)	73, 277, 560, 582, 683
Alw26I	GTCTC	1 cut(s)	357
AlwI	GGATC	4 cut(s)	173, 316, 337, 629
AlwNI	CAGNNNCTG	1 cut(s)	638
Ama87I	CYCGRG	3 cut(s)	74, 200, 757
AoxI	GGCC	2 cut(s)	586, 652
ApeKI	GCWGC	1 cut(s)	287
ApoI	RAATTY	1 cut(s)	467
ArsI	GACNNNNNNTTYG	1 cut(s)	31
AspLEI	GCGC	1 cut(s)	361
AspS9I	GGNCC	3 cut(s)	187, 249, 753
AvaI	CYCGRG	3 cut(s)	74, 200, 757
AvaII	GGWCC	3 cut(s)	187, 249, 753
BanI	GGYRCC	2 cut(s)	316, 358
BbsI	GAAGAC	2 cut(s)	201, 744
BbvI	GCAGC	1 cut(s)	299
BccI	CCATC	3 cut(s)	644, 686, 743
BceAI	ACGGC	1 cut(s)	85
BciT130I	CCWGG	1 cut(s)	163
BclI	TGATCA	1 cut(s)	667
BcoDI	GTCTC	1 cut(s)	357
BfoI	RGCGCY	1 cut(s)	362
BisI	GCNGC	4 cut(s)	110, 288, 362, 589
BlsI	GCNGC	4 cut(s)	111, 289, 363, 590
Bme1390I	CCNGG	1 cut(s)	163
Bme18I	GGWCC	3 cut(s)	187, 249, 753
BmeT110I	CYCGRG	3 cut(s)	74, 200, 757
BmgT120I	GGNCC	3 cut(s)	187, 249, 753
BmiI	GGNNCC	4 cut(s)	80, 318, 360, 754
BmrFI	CCNGG	1 cut(s)	163
BmsI	GCATC	3 cut(s)	50, 414, 584
BpiI	GAAGAC	2 cut(s)	201, 744
Bpu10I	CCTNAGC	1 cut(s)	129
Bsa29I	ATCGAT	2 cut(s)	168, 690
BsaHI	GRCGYC	1 cut(s)	359
BsaXI	ACNNNNNCTCC	2 cut(s)	125, 155
Bsc4I	CCNNNNNNNGG	2 cut(s)	326, 414
Bse118I	RCCGGY	1 cut(s)	124
BseBI	CCWGG	1 cut(s)	163
BseCI	ATCGAT	2 cut(s)	168, 690
BseGI	GGATG	1 cut(s)	373
BseLI	CCNNNNNNNGG	2 cut(s)	326, 414
BseMII	CTCAG	6 cut(s)	62, 143, 269, 368, 647, 720
BseXI	GCAGC	1 cut(s)	299
Bsh1236I	CGCG	1 cut(s)	89
Bsh1285I	CGRYCG	1 cut(s)	229
BshFI	GGCC	2 cut(s)	588, 654
BshNI	GGYRCC	2 cut(s)	316, 358
BshVI	ATCGAT	2 cut(s)	168, 690
BsiEI	CGRYCG	1 cut(s)	229
BsiHKCI	CYCGRG	3 cut(s)	74, 200, 757
BsiSI	CCGG	2 cut(s)	125, 365
BslFI	GGGAC	1 cut(s)	68
BslI	CCNNNNNNNGG	2 cut(s)	326, 414
BsmAI	GTCTC	1 cut(s)	357
BsmFI	GGGAC	1 cut(s)	68
BsmI	GAATGC	1 cut(s)	495
BsnI	GGCC	2 cut(s)	588, 654
BsoBI	CYCGRG	3 cut(s)	74, 200, 757
Bsp1407I	TGTACA	2 cut(s)	21, 390
Bsp143I	GATC	9 cut(s)	165, 214, 226, 308, 329, 511, 634, 667, 687
BspANI	GGCC	2 cut(s)	588, 654
BspCNI	CTCAG	6 cut(s)	61, 142, 270, 367, 648, 721
BspDI	ATCGAT	2 cut(s)	168, 690
BspFNI	CGCG	1 cut(s)	89
BspLI	GGNNCC	4 cut(s)	80, 318, 360, 754
BspPI	GGATC	4 cut(s)	173, 316, 337, 629
BspT107I	GGYRCC	2 cut(s)	316, 358
BsrFI	RCCGGY	1 cut(s)	124
BsrGI	TGTACA	2 cut(s)	21, 390
BssAI	RCCGGY	1 cut(s)	124
BssMI	GATC	9 cut(s)	165, 214, 226, 308, 329, 511, 634, 667, 687
BssNAI	GTATAC	1 cut(s)	538
BssNI	GRCGYC	1 cut(s)	359
Bst1107I	GTATAC	1 cut(s)	538
Bst2UI	CCWGG	1 cut(s)	163
Bst4CI	ACNGT	2 cut(s)	529, 545
Bst6I	CTCTTC	1 cut(s)	257
BstACI	GRCGYC	1 cut(s)	359
BstAUI	TGTACA	2 cut(s)	21, 390
BstC8I	GCNNGC	3 cut(s)	270, 575, 681
BstDEI	CTNAG	6 cut(s)	48, 129, 278, 354, 656, 729
BstF5I	GGATG	1 cut(s)	373
BstFNI	CGCG	1 cut(s)	89
BstH2I	RGCGCY	1 cut(s)	362
BstHHI	GCGC	1 cut(s)	361
BstKTI	GATC	9 cut(s)	168, 217, 229, 311, 332, 514, 637, 670, 690
BstMAI	GTCTC	1 cut(s)	357
BstMBI	GATC	9 cut(s)	165, 214, 226, 308, 329, 511, 634, 667, 687
BstMCI	CGRYCG	1 cut(s)	229
BstMWI	GCNNNNNNNGC	6 cut(s)	106, 274, 296, 579, 588, 594
BstNI	CCWGG	1 cut(s)	163
BstSCI	CCNGG	1 cut(s)	161
BstUI	CGCG	1 cut(s)	89
BstV1I	GCAGC	1 cut(s)	299
BstV2I	GAAGAC	2 cut(s)	201, 744
BstX2I	RGATCY	1 cut(s)	634
BstYI	RGATCY	1 cut(s)	634
BstZ17I	GTATAC	1 cut(s)	538
Bsu15I	ATCGAT	2 cut(s)	168, 690
BsuRI	GGCC	2 cut(s)	588, 654
BsuTUI	ATCGAT	2 cut(s)	168, 690
BtsCI	GGATG	1 cut(s)	373
BtsI	GCAGTG	1 cut(s)	434
BtsIMutI	CAGTG	3 cut(s)	56, 434, 550
Cac8I	GCNNGC	3 cut(s)	270, 575, 681
CaiI	CAGNNNCTG	1 cut(s)	638
CfoI	GCGC	1 cut(s)	361
Cfr10I	RCCGGY	1 cut(s)	124
Cfr13I	GGNCC	3 cut(s)	187, 249, 753
ClaI	ATCGAT	2 cut(s)	168, 690
Csp6I	GTAC	3 cut(s)	22, 391, 641
CviAII	CATG	1 cut(s)	734
CviQI	GTAC	3 cut(s)	22, 391, 641
DdeI	CTNAG	6 cut(s)	48, 129, 278, 354, 656, 729
DinI	GGCGCC	1 cut(s)	360
DpnI	GATC	9 cut(s)	167, 216, 228, 310, 331, 513, 636, 669, 689
DpnII	GATC	9 cut(s)	165, 214, 226, 308, 329, 511, 634, 667, 687
DraIII	CACNNNGTG	1 cut(s)	19
EaeI	YGGCCR	1 cut(s)	586
Eam1104I	CTCTTC	1 cut(s)	257
EarI	CTCTTC	1 cut(s)	257
EciI	GGCGGA	2 cut(s)	20, 287
Eco47I	GGWCC	3 cut(s)	187, 249, 753
Eco57I	CTGAAG	1 cut(s)	624
Eco88I	CYCGRG	3 cut(s)	74, 200, 757
EcoO109I	RGGNCCY	3 cut(s)	187, 249, 753
EcoRII	CCWGG	1 cut(s)	161
EgeI	GGCGCC	1 cut(s)	360
EheI	GGCGCC	1 cut(s)	360
FaeI	CATG	1 cut(s)	737
FaiI	YATR	5 cut(s)	62, 434, 538, 713, 735
FalI	AAGNNNNNCTT	2 cut(s)	129, 161
FaqI	GGGAC	1 cut(s)	68
FatI	CATG	1 cut(s)	733
FauI	CCCGC	4 cut(s)	94, 336, 407, 466
FbaI	TGATCA	1 cut(s)	667
FblI	GTMKAC	1 cut(s)	537
Fnu4HI	GCNGC	4 cut(s)	110, 288, 362, 589
FokI	GGATG	1 cut(s)	380
Fsp4HI	GCNGC	4 cut(s)	110, 288, 362, 589
GlaI	GCGC	1 cut(s)	360
GluI	GCNGC	4 cut(s)	110, 288, 362, 589
HaeII	RGCGCY	1 cut(s)	362
HaeIII	GGCC	2 cut(s)	588, 654
HapII	CCGG	2 cut(s)	125, 365
HhaI	GCGC	1 cut(s)	361
Hin1I	GRCGYC	1 cut(s)	359
Hin1II	CATG	1 cut(s)	737
Hin6I	GCGC	1 cut(s)	359
HinP1I	GCGC	1 cut(s)	359
HinfI	GANTC	2 cut(s)	46, 402
HpaII	CCGG	2 cut(s)	125, 365
Hpy166II	GTNNAC	3 cut(s)	22, 120, 538
Hpy188I	TCNGA	7 cut(s)	181, 308, 334, 501, 516, 525, 634
Hpy188III	TCNNGA	6 cut(s)	76, 131, 212, 218, 327, 475
Hpy8I	GTNNAC	3 cut(s)	22, 120, 538
Hpy99I	CGWCG	5 cut(s)	224, 227, 451, 490, 572
HpyAV	CCTTC	5 cut(s)	92, 155, 392, 599, 712
HpyCH4III	ACNGT	2 cut(s)	529, 545
HpyCH4IV	ACGT	2 cut(s)	567, 741
HpyCH4V	TGCA	4 cut(s)	427, 495, 577, 597
HpyF10VI	GCNNNNNNNGC	6 cut(s)	106, 274, 296, 579, 588, 594
HpyF3I	CTNAG	6 cut(s)	48, 129, 278, 354, 656, 729
HpySE526I	ACGT	2 cut(s)	567, 741
Hsp92I	GRCGYC	1 cut(s)	359
Hsp92II	CATG	1 cut(s)	737
HspAI	GCGC	1 cut(s)	359
KasI	GGCGCC	1 cut(s)	358
Ksp22I	TGATCA	1 cut(s)	667
Kzo9I	GATC	9 cut(s)	165, 214, 226, 308, 329, 511, 634, 667, 687
LmnI	GCTCC	2 cut(s)	38, 274
Lsp1109I	GCAGC	1 cut(s)	299
LweI	GCATC	3 cut(s)	50, 414, 584
MaeII	ACGT	2 cut(s)	567, 741
MaeIII	GTNAC	1 cut(s)	724
MalI	GATC	9 cut(s)	167, 216, 228, 310, 331, 513, 636, 669, 689
MboI	GATC	9 cut(s)	165, 214, 226, 308, 329, 511, 634, 667, 687
MboII	GAAGA	6 cut(s)	206, 251, 271, 274, 449, 749
MflI	RGATCY	1 cut(s)	634
MluCI	AATT	1 cut(s)	467
Mly113I	GGCGCC	1 cut(s)	359
MlyI	GAGTC	1 cut(s)	40
MmeI	TCCRAC	1 cut(s)	548
MseI	TTAA	1 cut(s)	645
MspI	CCGG	2 cut(s)	125, 365
MspR9I	CCNGG	1 cut(s)	163
Mva1269I	GAATGC	1 cut(s)	495
MvaI	CCWGG	1 cut(s)	163
MvnI	CGCG	1 cut(s)	89
MwoI	GCNNNNNNNGC	6 cut(s)	106, 274, 296, 579, 588, 594
NarI	GGCGCC	1 cut(s)	359
NdeII	GATC	9 cut(s)	165, 214, 226, 308, 329, 511, 634, 667, 687
NlaIII	CATG	1 cut(s)	737
NlaIV	GGNNCC	4 cut(s)	80, 318, 360, 754
NmeAIII	GCCGAG	1 cut(s)	433
NmuCI	GTSAC	1 cut(s)	724
PaeR7I	CTCGAG	2 cut(s)	200, 757
PcsI	WCGNNNNNNNCGW	2 cut(s)	198, 317
PctI	GAATGC	1 cut(s)	495
PfeI	GAWTC	1 cut(s)	402
PfoI	TCCNGGA	1 cut(s)	161
PkrI	GCNGC	4 cut(s)	111, 289, 363, 590
Ple19I	CGATCG	1 cut(s)	229
PleI	GAGTC	1 cut(s)	40
PluTI	GGCGCC	1 cut(s)	362
PpsI	GAGTC	1 cut(s)	40
PpuMI	RGGWCCY	3 cut(s)	187, 249, 753
Psp5II	RGGWCCY	3 cut(s)	187, 249, 753
Psp6I	CCWGG	1 cut(s)	161
PspGI	CCWGG	1 cut(s)	161
PspN4I	GGNNCC	4 cut(s)	80, 318, 360, 754
PspPI	GGNCC	3 cut(s)	187, 249, 753
PspPPI	RGGWCCY	3 cut(s)	187, 249, 753
PspXI	VCTCGAGB	2 cut(s)	200, 757
PstNI	CAGNNNCTG	1 cut(s)	638
PsuI	RGATCY	1 cut(s)	634
PvuI	CGATCG	1 cut(s)	229
RsaI	GTAC	3 cut(s)	23, 392, 642
RsaNI	GTAC	3 cut(s)	22, 391, 641
SaqAI	TTAA	1 cut(s)	645
SatI	GCNGC	4 cut(s)	110, 288, 362, 589
Sau3AI	GATC	9 cut(s)	165, 214, 226, 308, 329, 511, 634, 667, 687
Sau96I	GGNCC	3 cut(s)	187, 249, 753
SchI	GAGTC	1 cut(s)	40
ScrFI	CCNGG	1 cut(s)	163
SfaNI	GCATC	3 cut(s)	50, 414, 584
SfoI	GGCGCC	1 cut(s)	360
Sfr274I	CTCGAG	2 cut(s)	200, 757
SinI	GGWCC	3 cut(s)	187, 249, 753
SlaI	CTCGAG	2 cut(s)	200, 757
SmlI	CTYRAG	2 cut(s)	200, 757
SmoI	CTYRAG	2 cut(s)	200, 757
Sse9I	AATT	1 cut(s)	467
SspDI	GGCGCC	1 cut(s)	358
StyD4I	CCNGG	1 cut(s)	161
TaaI	ACNGT	2 cut(s)	529, 545
TaiI	ACGT	2 cut(s)	570, 744
TasI	AATT	1 cut(s)	467
TatI	WGTACW	3 cut(s)	21, 390, 640
TauI	GCSGC	3 cut(s)	112, 364, 591
TfiI	GAWTC	1 cut(s)	402
Tru1I	TTAA	1 cut(s)	645
Tru9I	TTAA	1 cut(s)	645
TscAI	CASTG	3 cut(s)	56, 434, 550
TseFI	GTSAC	1 cut(s)	724
TseI	GCWGC	1 cut(s)	287
Tsp45I	GTSAC	1 cut(s)	724
TspDTI	ATGAA	1 cut(s)	750
TspGWI	ACGGA	1 cut(s)	503
TspRI	CASTG	3 cut(s)	56, 434, 550
VpaK11BI	GGWCC	3 cut(s)	187, 249, 753
XapI	RAATTY	1 cut(s)	467
XhoI	CTCGAG	2 cut(s)	200, 757
XmiI	GTMKAC	1 cut(s)	537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.