Rh4DG188400

L-type lectin-domain containing receptor kinase IX.1-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
Physical Location & Seq
Forward (+)
37151562 .. 37151762
201 bp
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UTR
Exon/CDS
Intron
Rh4DG188400.1

Sequence Viewer

Length: 201 bp
ATGAAGGTTCTTCAGCTTGAAGTTCCATTGCCAGAACTTCCAAGGGACATGCATGATCATTCAGTACAACCTGAACATCAACTACAAACTCAGGCTGCTTCCTCTCAAATATCCTTAACTTCTTCTAGCTTTGTTACTGTGCGCAATGCTTTGAAGGGCAAGGTGAAGGAGGTGGAACCAATTCATCGTGATAAATTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

66

Amino Acids

7.49

Weight (kDa)

6.9

Isoelectric Point (pI)

50.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0021643)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0001217.1_g000024
rosa_roxburghii Rroxscaffold_4G00298830
rosa_rugosa Rorug05G0567300
rosa_samantha Rh4CG201600 Rh4DG188400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 143
AcsI RAATTY 1 cut(s) 194
AfaI GTAC 1 cut(s) 66
AgsI TTSAA 2 cut(s) 20, 154
AluBI AGCT 2 cut(s) 16, 129
AluI AGCT 2 cut(s) 16, 129
ApeKI GCWGC 1 cut(s) 95
ApoI RAATTY 1 cut(s) 194
Asp700I GAANNNNTTC 1 cut(s) 180
AspLEI GCGC 1 cut(s) 144
AsuHPI GGTGA 1 cut(s) 175
BbvI GCAGC 1 cut(s) 82
BclI TGATCA 1 cut(s) 55
BfaI CTAG 2 cut(s) 126, 199
BisI GCNGC 1 cut(s) 96
BlsI GCNGC 1 cut(s) 97
BmiI GGNNCC 1 cut(s) 177
BsaJI CCNNGG 1 cut(s) 41
Bse3DI GCAATG 2 cut(s) 26, 151
BseDI CCNNGG 1 cut(s) 41
BseMI GCAATG 2 cut(s) 26, 151
BseMII CTCAG 1 cut(s) 104
BseXI GCAGC 1 cut(s) 82
BslFI GGGAC 1 cut(s) 59
BsmFI GGGAC 1 cut(s) 59
Bsp143I GATC 1 cut(s) 55
BspCNI CTCAG 1 cut(s) 103
BspLI GGNNCC 1 cut(s) 177
BsrDI GCAATG 2 cut(s) 26, 151
BssECI CCNNGG 1 cut(s) 41
BssMI GATC 1 cut(s) 55
BssT1I CCWWGG 1 cut(s) 41
Bst4CI ACNGT 1 cut(s) 139
BstDEI CTNAG 1 cut(s) 90
BstHHI GCGC 1 cut(s) 144
BstKTI GATC 1 cut(s) 58
BstMBI GATC 1 cut(s) 55
BstNSI RCATGY 1 cut(s) 52
BstV1I GCAGC 1 cut(s) 82
CfoI GCGC 1 cut(s) 144
Csp6I GTAC 1 cut(s) 65
CviAII CATG 2 cut(s) 49, 53
CviJI RGCY 3 cut(s) 16, 95, 129
CviKI_1 RGCY 3 cut(s) 16, 95, 129
CviQI GTAC 1 cut(s) 65
DdeI CTNAG 1 cut(s) 90
DpnI GATC 1 cut(s) 57
DpnII GATC 1 cut(s) 55
Eco130I CCWWGG 1 cut(s) 41
EcoT14I CCWWGG 1 cut(s) 41
EcoT22I ATGCAT 1 cut(s) 54
ErhI CCWWGG 1 cut(s) 41
FaeI CATG 2 cut(s) 52, 56
FaiI YATR 2 cut(s) 50, 54
FaqI GGGAC 1 cut(s) 59
FatI CATG 2 cut(s) 48, 52
FbaI TGATCA 1 cut(s) 55
Fnu4HI GCNGC 1 cut(s) 96
Fsp4HI GCNGC 1 cut(s) 96
FspBI CTAG 2 cut(s) 126, 199
FspI TGCGCA 1 cut(s) 143
GlaI GCGC 1 cut(s) 143
GluI GCNGC 1 cut(s) 96
HhaI GCGC 1 cut(s) 144
Hin1II CATG 2 cut(s) 52, 56
Hin6I GCGC 1 cut(s) 142
HinP1I GCGC 1 cut(s) 142
HphI GGTGA 1 cut(s) 175
Hpy188III TCNNGA 1 cut(s) 188
HpyAV CCTTC 2 cut(s) 148, 160
HpyCH4III ACNGT 1 cut(s) 139
HpyCH4V TGCA 1 cut(s) 52
HpyF3I CTNAG 1 cut(s) 90
Hsp92II CATG 2 cut(s) 52, 56
HspAI GCGC 1 cut(s) 142
Ksp22I TGATCA 1 cut(s) 55
Kzo9I GATC 1 cut(s) 55
LpnPI CCDG 3 cut(s) 45, 77, 84
Lsp1109I GCAGC 1 cut(s) 82
MaeI CTAG 2 cut(s) 126, 199
MaeIII GTNAC 1 cut(s) 133
MalI GATC 1 cut(s) 57
MboI GATC 1 cut(s) 55
MboII GAAGA 1 cut(s) 114
MluCI AATT 2 cut(s) 180, 194
MnlI CCTC 2 cut(s) 112, 163
Mph1103I ATGCAT 1 cut(s) 54
MroXI GAANNNNTTC 1 cut(s) 180
MseI TTAA 1 cut(s) 116
NdeII GATC 1 cut(s) 55
NlaIII CATG 2 cut(s) 52, 56
NlaIV GGNNCC 1 cut(s) 177
NsbI TGCGCA 1 cut(s) 143
NsiI ATGCAT 1 cut(s) 54
NspI RCATGY 1 cut(s) 52
PdmI GAANNNNTTC 1 cut(s) 180
PkrI GCNGC 1 cut(s) 97
PspN4I GGNNCC 1 cut(s) 177
PsrI GAACNNNNNNTAC 2 cut(s) 66, 98
RsaI GTAC 1 cut(s) 66
RsaNI GTAC 1 cut(s) 65
SaqAI TTAA 1 cut(s) 116
SatI GCNGC 1 cut(s) 96
Sau3AI GATC 1 cut(s) 55
SetI ASST 6 cut(s) 9, 18, 73, 131, 165, 174
SgeI CNNG 9 cut(s) 29, 44, 54, 61, 65, 83, 104, 138, 172
Sse9I AATT 2 cut(s) 180, 194
SspMI CTAG 2 cut(s) 126, 199
StyI CCWWGG 1 cut(s) 41
TaaI ACNGT 1 cut(s) 139
TasI AATT 2 cut(s) 180, 194
TatI WGTACW 1 cut(s) 64
Tru1I TTAA 1 cut(s) 116
Tru9I TTAA 1 cut(s) 116
TseI GCWGC 1 cut(s) 95
TspDTI ATGAA 2 cut(s) 17, 173
XapI RAATTY 1 cut(s) 194
XceI RCATGY 1 cut(s) 52
XmnI GAANNNNTTC 1 cut(s) 180
XspI CTAG 2 cut(s) 126, 199
Zsp2I ATGCAT 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.