Rmu_sc0001226.1_g000027
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001226.1
Physical Location & Seq
Reverse (-)
131344 .. 131991
648 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001226.1_g000027.1.cds

Sequence Viewer

Length: 399 bp
atggatgcagcacttgagatgccccaagcagtactatccaatgaggcatcttctacaacagaagatagcggagttgcaagcaatcctactaggcagcatggcatggttcttccatttgaacccctttcatttactttcgagcaaatcagatatgctgttgatatgtttaaggaaatgaaaaatcaaagcaaagctggggatcggctagaacttcttaagggcgtgagtggtgcttttaggcctggagttctaacagatttgataggtgtcagtggcgctggaaaaaccactctcatggatgtcttagtaggaaggaagacaagtggatatattgagggagaatcaccttatctagatttgcaaaaaggcaagaacaatgatcaaaatatcgagttttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

132

Amino Acids

14.33

Weight (kDa)

4.84

Isoelectric Point (pI)

41.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0021644)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0001226.1_g000027 Rmu_sc0012097.1_g000015
rosa_roxburghii Rroxscaffold_3G00247830
rosa_rugosa Rorug07G0125800
rosa_samantha Rh7BG252200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 69
AclWI GGATC 1 cut(s) 207
AfaI GTAC 1 cut(s) 33
AflII CTTAAG 1 cut(s) 215
AgsI TTSAA 1 cut(s) 119
AjnI CCWGG 1 cut(s) 241
AluBI AGCT 1 cut(s) 194
AluI AGCT 1 cut(s) 194
AlwI GGATC 1 cut(s) 207
AoxI GGCC 1 cut(s) 239
ApeKI GCWGC 2 cut(s) 8, 94
AspLEI GCGC 1 cut(s) 278
AsuHPI GGTGA 1 cut(s) 336
BbsI GAAGAC 1 cut(s) 323
BbvI GCAGC 2 cut(s) 20, 106
BciT130I CCWGG 1 cut(s) 243
BclI TGATCA 1 cut(s) 379
BfaI CTAG 3 cut(s) 90, 206, 353
BfoI RGCGCY 1 cut(s) 279
BfrI CTTAAG 1 cut(s) 215
BisI GCNGC 2 cut(s) 9, 95
BlsI GCNGC 2 cut(s) 10, 96
BmcAI AGTACT 1 cut(s) 33
Bme1390I CCNGG 1 cut(s) 243
BmrFI CCNGG 1 cut(s) 243
BmsI GCATC 2 cut(s) 9, 56
BpiI GAAGAC 1 cut(s) 323
BpmI CTGGAG 1 cut(s) 264
BpuEI CTTGAG 1 cut(s) 35
BseBI CCWGG 1 cut(s) 243
BseGI GGATG 2 cut(s) 10, 304
BseXI GCAGC 2 cut(s) 20, 106
BseYI CCCAGC 1 cut(s) 194
BshFI GGCC 1 cut(s) 241
BsnI GGCC 1 cut(s) 241
Bsp143I GATC 2 cut(s) 199, 379
BspACI CCGC 1 cut(s) 69
BspANI GGCC 1 cut(s) 241
BspPI GGATC 1 cut(s) 207
BspTI CTTAAG 1 cut(s) 215
BssMI GATC 2 cut(s) 199, 379
Bst2UI CCWGG 1 cut(s) 243
BstAFI CTTAAG 1 cut(s) 215
BstC8I GCNNGC 1 cut(s) 79
BstDEI CTNAG 1 cut(s) 304
BstF5I GGATG 2 cut(s) 10, 304
BstH2I RGCGCY 1 cut(s) 279
BstHHI GCGC 1 cut(s) 278
BstKTI GATC 2 cut(s) 202, 382
BstMBI GATC 2 cut(s) 199, 379
BstNI CCWGG 1 cut(s) 243
BstSCI CCNGG 1 cut(s) 241
BstV1I GCAGC 2 cut(s) 20, 106
BstV2I GAAGAC 1 cut(s) 323
BstXI CCANNNNNNTGG 1 cut(s) 295
BsuRI GGCC 1 cut(s) 241
BtsCI GGATG 2 cut(s) 10, 304
BtsIMutI CAGTG 1 cut(s) 277
Cac8I GCNNGC 1 cut(s) 79
CfoI GCGC 1 cut(s) 278
Csp6I GTAC 1 cut(s) 32
CviAII CATG 3 cut(s) 98, 103, 295
CviJI RGCY 3 cut(s) 194, 205, 241
CviKI_1 RGCY 3 cut(s) 194, 205, 241
CviQI GTAC 1 cut(s) 32
DdeI CTNAG 1 cut(s) 304
DpnI GATC 2 cut(s) 201, 381
DpnII GATC 2 cut(s) 199, 379
Eco147I AGGCCT 1 cut(s) 241
EcoRII CCWGG 1 cut(s) 241
FaeI CATG 3 cut(s) 101, 106, 298
FaiI YATR 6 cut(s) 99, 104, 153, 164, 296, 330
FatI CATG 3 cut(s) 97, 102, 294
FbaI TGATCA 1 cut(s) 379
Fnu4HI GCNGC 2 cut(s) 9, 95
FokI GGATG 2 cut(s) 17, 311
Fsp4HI GCNGC 2 cut(s) 9, 95
FspBI CTAG 3 cut(s) 90, 206, 353
GlaI GCGC 1 cut(s) 277
GluI GCNGC 2 cut(s) 9, 95
GsaI CCCAGC 1 cut(s) 198
GsuI CTGGAG 1 cut(s) 264
HaeII RGCGCY 1 cut(s) 279
HaeIII GGCC 1 cut(s) 241
HhaI GCGC 1 cut(s) 278
Hin1II CATG 3 cut(s) 101, 106, 298
Hin6I GCGC 1 cut(s) 276
HinP1I GCGC 1 cut(s) 276
HinfI GANTC 1 cut(s) 341
HphI GGTGA 1 cut(s) 336
Hpy188I TCNGA 1 cut(s) 149
Hpy188III TCNNGA 1 cut(s) 353
HpyAV CCTTC 1 cut(s) 306
HpyCH4V TGCA 3 cut(s) 8, 77, 361
HpyF3I CTNAG 1 cut(s) 304
Hsp92II CATG 3 cut(s) 101, 106, 298
HspAI GCGC 1 cut(s) 276
Ksp22I TGATCA 1 cut(s) 379
Kzo9I GATC 2 cut(s) 199, 379
LpnPI CCDG 4 cut(s) 180, 228, 255, 264
Lsp1109I GCAGC 2 cut(s) 20, 106
LweI GCATC 2 cut(s) 9, 56
MaeI CTAG 3 cut(s) 90, 206, 353
MalI GATC 2 cut(s) 201, 381
MboI GATC 2 cut(s) 199, 379
MboII GAAGA 4 cut(s) 42, 74, 101, 328
MnlI CCTC 2 cut(s) 37, 328
MseI TTAA 2 cut(s) 168, 216
MslI CAYNNNNRTG 1 cut(s) 293
MspCI CTTAAG 1 cut(s) 215
MspR9I CCNGG 1 cut(s) 243
MvaI CCWGG 1 cut(s) 243
NdeII GATC 2 cut(s) 199, 379
NlaIII CATG 3 cut(s) 101, 106, 298
PceI AGGCCT 1 cut(s) 241
PfeI GAWTC 1 cut(s) 341
PkrI GCNGC 2 cut(s) 10, 96
Psp6I CCWGG 1 cut(s) 241
PspFI CCCAGC 1 cut(s) 194
PspGI CCWGG 1 cut(s) 241
RsaI GTAC 1 cut(s) 33
RsaNI GTAC 1 cut(s) 32
RseI CAYNNNNRTG 1 cut(s) 293
SaqAI TTAA 2 cut(s) 168, 216
SatI GCNGC 2 cut(s) 9, 95
Sau3AI GATC 2 cut(s) 199, 379
ScaI AGTACT 1 cut(s) 33
ScrFI CCNGG 1 cut(s) 243
SetI ASST 3 cut(s) 196, 268, 349
SfaNI GCATC 2 cut(s) 9, 56
SmiMI CAYNNNNRTG 1 cut(s) 293
SmlI CTYRAG 2 cut(s) 14, 215
SmoI CTYRAG 2 cut(s) 14, 215
SseBI AGGCCT 1 cut(s) 241
SsiI CCGC 1 cut(s) 69
SspMI CTAG 3 cut(s) 90, 206, 353
StuI AGGCCT 1 cut(s) 241
StyD4I CCNGG 1 cut(s) 241
TaqI TCGA 2 cut(s) 138, 390
TatI WGTACW 1 cut(s) 31
TfiI GAWTC 1 cut(s) 341
Tru1I TTAA 2 cut(s) 168, 216
Tru9I TTAA 2 cut(s) 168, 216
TscAI CASTG 1 cut(s) 277
TseI GCWGC 2 cut(s) 8, 94
TspDTI ATGAA 2 cut(s) 117, 191
TspRI CASTG 1 cut(s) 277
Vha464I CTTAAG 1 cut(s) 215
XbaI TCTAGA 1 cut(s) 352
XspI CTAG 3 cut(s) 90, 206, 353
ZrmI AGTACT 1 cut(s) 33
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.