Rroxscaffold_3G00247830
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0021644
Physical Location & Seq
Forward (+)
41200234 .. 41201809
1576 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00247830.1

Sequence Viewer

Length: 468 bp
ATGACGAATGCAATCAATGCATTTTCATCCTTCACATTAATATATATGTCCTTGCAGGAAATGAAAGATCAAAGCAAAGCTGGGGATCGGCTAGAACTTCTTAAGGGCGTGAGTGGTGCTTTTAGGCCTAGAGTTCTAACAGATTTGATGGGTGTCAGTGGCGCTGGAAAAACCACTCTCATGGATGTCTTAACAGGAAGGAAGACAAGTGGATATATTGAGGGAGAATCACCTTATCTAGATATGCAAAAAGGCAAGAACAATGATCAAAATATCGAGTTTCGAGGAAATATCAATAGTCCTAAAAACGGAAATTTAGACGGAAATATCGATTTCGTCATTGGGCATGAAACATTTGCTCGCATATCCGGATACCGTGATTCCGTGAGCAAACAGATATACACTCCCTCATGTCACCGTTTACTAGTCCGGTTTATTCTGCATGGCTCCAGCTGTCCCGGAGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

155

Amino Acids

16.99

Weight (kDa)

8.93

Isoelectric Point (pI)

46.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 34 - 84 8.8e-06 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021644)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0001226.1_g000027 Rmu_sc0012097.1_g000015
rosa_roxburghii Rroxscaffold_3G00247830
rosa_rugosa Rorug07G0125800
rosa_samantha Rh7BG252200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 368
AclWI GGATC 1 cut(s) 93
AcsI RAATTY 1 cut(s) 313
AfiI CCNNNNNNNGG 1 cut(s) 308
AflII CTTAAG 1 cut(s) 101
AhlI ACTAGT 1 cut(s) 424
AluBI AGCT 2 cut(s) 80, 453
AluI AGCT 2 cut(s) 80, 453
AlwI GGATC 1 cut(s) 93
Aor13HI TCCGGA 1 cut(s) 368
AoxI GGCC 1 cut(s) 125
ApoI RAATTY 1 cut(s) 313
AseI ATTAAT 1 cut(s) 38
AspLEI GCGC 1 cut(s) 164
AsuC2I CCSGG 1 cut(s) 459
AsuHPI GGTGA 2 cut(s) 222, 407
BbsI GAAGAC 1 cut(s) 209
BccI CCATC 1 cut(s) 142
BciVI GTATCC 1 cut(s) 365
BclI TGATCA 1 cut(s) 265
BcnI CCSGG 1 cut(s) 459
BcuI ACTAGT 1 cut(s) 424
BfaI CTAG 4 cut(s) 92, 129, 239, 425
BfoI RGCGCY 1 cut(s) 165
BfrI CTTAAG 1 cut(s) 101
BfuI GTATCC 1 cut(s) 365
Bme1390I CCNGG 1 cut(s) 459
BmiI GGNNCC 1 cut(s) 448
BmrFI CCNGG 1 cut(s) 459
BpiI GAAGAC 1 cut(s) 209
BpmI CTGGAG 1 cut(s) 433
BpuMI CCSGG 1 cut(s) 459
Bsa29I ATCGAT 1 cut(s) 330
BsaWI WCCGGW 2 cut(s) 368, 429
Bsc4I CCNNNNNNNGG 1 cut(s) 308
BseAI TCCGGA 1 cut(s) 368
BseCI ATCGAT 1 cut(s) 330
BseGI GGATG 2 cut(s) 26, 190
BseLI CCNNNNNNNGG 1 cut(s) 308
BseYI CCCAGC 1 cut(s) 80
BshFI GGCC 1 cut(s) 127
BshVI ATCGAT 1 cut(s) 330
BsiSI CCGG 3 cut(s) 369, 430, 459
BslFI GGGAC 1 cut(s) 441
BslI CCNNNNNNNGG 1 cut(s) 308
BsmFI GGGAC 1 cut(s) 441
BsmI GAATGC 1 cut(s) 13
BsnI GGCC 1 cut(s) 127
Bsp13I TCCGGA 1 cut(s) 368
Bsp143I GATC 3 cut(s) 67, 85, 265
BspANI GGCC 1 cut(s) 127
BspDI ATCGAT 1 cut(s) 330
BspEI TCCGGA 1 cut(s) 368
BspLI GGNNCC 1 cut(s) 448
BspPI GGATC 1 cut(s) 93
BspTI CTTAAG 1 cut(s) 101
BssMI GATC 3 cut(s) 67, 85, 265
Bst4CI ACNGT 2 cut(s) 377, 419
BstAFI CTTAAG 1 cut(s) 101
BstAPI GCANNNNNTGC 1 cut(s) 17
BstC8I GCNNGC 1 cut(s) 361
BstF5I GGATG 2 cut(s) 26, 190
BstH2I RGCGCY 1 cut(s) 165
BstHHI GCGC 1 cut(s) 164
BstKTI GATC 3 cut(s) 70, 88, 268
BstMBI GATC 3 cut(s) 67, 85, 265
BstMWI GCNNNNNNNGC 1 cut(s) 17
BstSCI CCNGG 1 cut(s) 457
BstV2I GAAGAC 1 cut(s) 209
BstXI CCANNNNNNTGG 1 cut(s) 181
Bsu15I ATCGAT 1 cut(s) 330
BsuI GTATCC 1 cut(s) 365
BsuRI GGCC 1 cut(s) 127
BsuTUI ATCGAT 1 cut(s) 330
BtsCI GGATG 2 cut(s) 26, 190
BtsIMutI CAGTG 1 cut(s) 163
Cac8I GCNNGC 1 cut(s) 361
CfoI GCGC 1 cut(s) 164
ClaI ATCGAT 1 cut(s) 330
CviAII CATG 4 cut(s) 181, 347, 411, 443
CviJI RGCY 5 cut(s) 80, 91, 127, 447, 453
CviKI_1 RGCY 5 cut(s) 80, 91, 127, 447, 453
DpnI GATC 3 cut(s) 69, 87, 267
DpnII GATC 3 cut(s) 67, 85, 265
Eco147I AGGCCT 1 cut(s) 127
EcoT22I ATGCAT 1 cut(s) 22
FaeI CATG 4 cut(s) 184, 350, 414, 446
FaqI GGGAC 1 cut(s) 441
FatI CATG 4 cut(s) 180, 346, 410, 442
FbaI TGATCA 1 cut(s) 265
FokI GGATG 2 cut(s) 13, 197
FspBI CTAG 4 cut(s) 92, 129, 239, 425
GlaI GCGC 1 cut(s) 163
GsaI CCCAGC 1 cut(s) 84
GsuI CTGGAG 1 cut(s) 433
HaeII RGCGCY 1 cut(s) 165
HaeIII GGCC 1 cut(s) 127
HapII CCGG 3 cut(s) 369, 430, 459
HhaI GCGC 1 cut(s) 164
Hin1II CATG 4 cut(s) 184, 350, 414, 446
Hin6I GCGC 1 cut(s) 162
HinP1I GCGC 1 cut(s) 162
HinfI GANTC 2 cut(s) 227, 380
HpaII CCGG 3 cut(s) 369, 430, 459
HphI GGTGA 2 cut(s) 222, 407
Hpy166II GTNNAC 1 cut(s) 422
Hpy188III TCNNGA 2 cut(s) 239, 369
Hpy8I GTNNAC 1 cut(s) 422
HpyAV CCTTC 2 cut(s) 40, 192
HpyCH4III ACNGT 2 cut(s) 377, 419
HpyCH4V TGCA 5 cut(s) 11, 20, 55, 247, 442
HpyF10VI GCNNNNNNNGC 1 cut(s) 17
Hsp92II CATG 4 cut(s) 184, 350, 414, 446
HspAI GCGC 1 cut(s) 162
Kpn2I TCCGGA 1 cut(s) 368
Ksp22I TGATCA 1 cut(s) 265
Kzo9I GATC 3 cut(s) 67, 85, 265
LmnI GCTCC 1 cut(s) 452
LpnPI CCDG 7 cut(s) 41, 66, 150, 180, 382, 443, 463
MaeI CTAG 4 cut(s) 92, 129, 239, 425
MaeIII GTNAC 1 cut(s) 413
MalI GATC 3 cut(s) 69, 87, 267
MboI GATC 3 cut(s) 67, 85, 265
MboII GAAGA 1 cut(s) 214
MluCI AATT 1 cut(s) 313
MnlI CCTC 4 cut(s) 214, 278, 418, 455
Mph1103I ATGCAT 1 cut(s) 22
MroI TCCGGA 1 cut(s) 368
MseI TTAA 3 cut(s) 38, 102, 191
MslI CAYNNNNRTG 1 cut(s) 179
MspA1I CMGCKG 1 cut(s) 453
MspCI CTTAAG 1 cut(s) 101
MspI CCGG 3 cut(s) 369, 430, 459
MspR9I CCNGG 1 cut(s) 459
Mva1269I GAATGC 1 cut(s) 13
MwoI GCNNNNNNNGC 1 cut(s) 17
NciI CCSGG 1 cut(s) 459
NdeII GATC 3 cut(s) 67, 85, 265
NlaIII CATG 4 cut(s) 184, 350, 414, 446
NlaIV GGNNCC 1 cut(s) 448
NmuCI GTSAC 1 cut(s) 413
NsiI ATGCAT 1 cut(s) 22
PceI AGGCCT 1 cut(s) 127
PcsI WCGNNNNNNNCGW 1 cut(s) 327
PctI GAATGC 1 cut(s) 13
PfeI GAWTC 2 cut(s) 227, 380
PfoI TCCNGGA 1 cut(s) 457
PshBI ATTAAT 1 cut(s) 38
PspFI CCCAGC 1 cut(s) 80
PspN4I GGNNCC 1 cut(s) 448
PvuII CAGCTG 1 cut(s) 453
RseI CAYNNNNRTG 1 cut(s) 179
SaqAI TTAA 3 cut(s) 38, 102, 191
Sau3AI GATC 3 cut(s) 67, 85, 265
ScrFI CCNGG 1 cut(s) 459
SetI ASST 4 cut(s) 82, 235, 455, 466
SmiMI CAYNNNNRTG 1 cut(s) 179
SmlI CTYRAG 1 cut(s) 101
SmoI CTYRAG 1 cut(s) 101
SpeI ACTAGT 1 cut(s) 424
Sse9I AATT 1 cut(s) 313
SseBI AGGCCT 1 cut(s) 127
SspMI CTAG 4 cut(s) 92, 129, 239, 425
StuI AGGCCT 1 cut(s) 127
StyD4I CCNGG 1 cut(s) 457
TaaI ACNGT 2 cut(s) 377, 419
TaqI TCGA 3 cut(s) 276, 283, 330
TasI AATT 1 cut(s) 313
TfiI GAWTC 2 cut(s) 227, 380
Tru1I TTAA 3 cut(s) 38, 102, 191
Tru9I TTAA 3 cut(s) 38, 102, 191
TscAI CASTG 1 cut(s) 163
TseFI GTSAC 1 cut(s) 413
Tsp45I GTSAC 1 cut(s) 413
TspDTI ATGAA 3 cut(s) 15, 77, 363
TspGWI ACGGA 3 cut(s) 324, 336, 373
TspRI CASTG 1 cut(s) 163
Vha464I CTTAAG 1 cut(s) 101
VspI ATTAAT 1 cut(s) 38
XapI RAATTY 1 cut(s) 313
XbaI TCTAGA 1 cut(s) 238
XspI CTAG 4 cut(s) 92, 129, 239, 425
Zsp2I ATGCAT 1 cut(s) 22
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.