Rh7BG252200
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0021644
Physical Location & Seq
Reverse (-)
22898051 .. 22903193
5143 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG252200.1

Sequence Viewer

Length: 432 bp
ATGAGGCATCCTCTACAACAGAAGATAGCGGAGTTGCAAGCAATCCTACTAGGCAGCATGGCATGGTTCTTCCATTTGAACCCCTTTCATTTACTTTCGAGCAAAATCAGATATGCTGTTGATATGCCTAAGGAAATGAAAGATCAAAGCAAAGCTGGGGATCAGCTAGAACTTCTTAAGGGCATGAGTGGTGCTTTTAGGCCTGGAGTTCTAACAGATTTGATGGGTGTTAGTGGCGCTGGAAAAACCACTCTCATGGATGTCTTAGCAGGAAGGAAGACAAGTGGATATATTGAGGGAGAATCACCTTATCTAGATATGCAAAAAGGCAAGAACAATGATCAAAATATCGAGTTTCGAGGAAATATCGATGGTCCCGAAAACGGAAATATCGTGGATATATCGATTTCGGTAAATAATCAAGAAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

143

Amino Acids

15.79

Weight (kDa)

6.28

Isoelectric Point (pI)

42.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 59 - 108 1.2e-06 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021644)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0001226.1_g000027 Rmu_sc0012097.1_g000015
rosa_roxburghii Rroxscaffold_3G00247830
rosa_rugosa Rorug07G0125800
rosa_samantha Rh7BG252200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 29
AclWI GGATC 1 cut(s) 168
AfiI CCNNNNNNNGG 1 cut(s) 383
AflII CTTAAG 1 cut(s) 176
AgsI TTSAA 1 cut(s) 79
AjnI CCWGG 1 cut(s) 202
AluBI AGCT 2 cut(s) 155, 166
AluI AGCT 2 cut(s) 155, 166
AlwI GGATC 1 cut(s) 168
AoxI GGCC 1 cut(s) 200
ApeKI GCWGC 1 cut(s) 54
AspLEI GCGC 1 cut(s) 239
AspS9I GGNCC 1 cut(s) 374
AsuHPI GGTGA 1 cut(s) 297
AvaII GGWCC 1 cut(s) 374
AxyI CCTNAGG 1 cut(s) 129
BbsI GAAGAC 1 cut(s) 284
BbvI GCAGC 1 cut(s) 66
BccI CCATC 2 cut(s) 217, 365
BciT130I CCWGG 1 cut(s) 204
BclI TGATCA 1 cut(s) 340
BfaI CTAG 3 cut(s) 50, 167, 314
BfoI RGCGCY 1 cut(s) 240
BfrI CTTAAG 1 cut(s) 176
BisI GCNGC 1 cut(s) 55
BlsI GCNGC 1 cut(s) 56
Bme1390I CCNGG 1 cut(s) 204
Bme18I GGWCC 1 cut(s) 374
BmgT120I GGNCC 1 cut(s) 374
BmiI GGNNCC 1 cut(s) 376
BmrFI CCNGG 1 cut(s) 204
BmsI GCATC 1 cut(s) 16
BpiI GAAGAC 1 cut(s) 284
BplI GAGNNNNNCTC 1 cut(s) 27
BpmI CTGGAG 1 cut(s) 225
Bsa29I ATCGAT 2 cut(s) 369, 404
Bsc4I CCNNNNNNNGG 1 cut(s) 383
Bse21I CCTNAGG 1 cut(s) 129
BseBI CCWGG 1 cut(s) 204
BseCI ATCGAT 2 cut(s) 369, 404
BseGI GGATG 2 cut(s) 7, 265
BseLI CCNNNNNNNGG 1 cut(s) 383
BseXI GCAGC 1 cut(s) 66
BseYI CCCAGC 1 cut(s) 155
BshFI GGCC 1 cut(s) 202
BshVI ATCGAT 2 cut(s) 369, 404
BslFI GGGAC 1 cut(s) 360
BslI CCNNNNNNNGG 1 cut(s) 383
BsmFI GGGAC 1 cut(s) 360
BsnI GGCC 1 cut(s) 202
Bsp143I GATC 3 cut(s) 142, 160, 340
BspACI CCGC 1 cut(s) 29
BspANI GGCC 1 cut(s) 202
BspDI ATCGAT 2 cut(s) 369, 404
BspLI GGNNCC 1 cut(s) 376
BspPI GGATC 1 cut(s) 168
BspTI CTTAAG 1 cut(s) 176
BssMI GATC 3 cut(s) 142, 160, 340
Bst2UI CCWGG 1 cut(s) 204
BstAFI CTTAAG 1 cut(s) 176
BstC8I GCNNGC 1 cut(s) 39
BstDEI CTNAG 2 cut(s) 129, 265
BstF5I GGATG 2 cut(s) 7, 265
BstH2I RGCGCY 1 cut(s) 240
BstHHI GCGC 1 cut(s) 239
BstKTI GATC 3 cut(s) 145, 163, 343
BstMBI GATC 3 cut(s) 142, 160, 340
BstNI CCWGG 1 cut(s) 204
BstSCI CCNGG 1 cut(s) 202
BstV1I GCAGC 1 cut(s) 66
BstV2I GAAGAC 1 cut(s) 284
BstXI CCANNNNNNTGG 1 cut(s) 256
Bsu15I ATCGAT 2 cut(s) 369, 404
Bsu36I CCTNAGG 1 cut(s) 129
BsuRI GGCC 1 cut(s) 202
BsuTUI ATCGAT 2 cut(s) 369, 404
BtsCI GGATG 2 cut(s) 7, 265
Cac8I GCNNGC 1 cut(s) 39
CfoI GCGC 1 cut(s) 239
Cfr13I GGNCC 1 cut(s) 374
ClaI ATCGAT 2 cut(s) 369, 404
CviAII CATG 4 cut(s) 58, 63, 184, 256
CviJI RGCY 3 cut(s) 155, 166, 202
CviKI_1 RGCY 3 cut(s) 155, 166, 202
DdeI CTNAG 2 cut(s) 129, 265
DpnI GATC 3 cut(s) 144, 162, 342
DpnII GATC 3 cut(s) 142, 160, 340
Eco147I AGGCCT 1 cut(s) 202
Eco47I GGWCC 1 cut(s) 374
Eco81I CCTNAGG 1 cut(s) 129
EcoRII CCWGG 1 cut(s) 202
FaeI CATG 4 cut(s) 61, 66, 187, 259
FaiI YATR 9 cut(s) 59, 64, 114, 125, 185, 257, 291, 320, 401
FaqI GGGAC 1 cut(s) 360
FatI CATG 4 cut(s) 57, 62, 183, 255
FbaI TGATCA 1 cut(s) 340
Fnu4HI GCNGC 1 cut(s) 55
FokI GGATG 1 cut(s) 272
Fsp4HI GCNGC 1 cut(s) 55
FspBI CTAG 3 cut(s) 50, 167, 314
GlaI GCGC 1 cut(s) 238
GluI GCNGC 1 cut(s) 55
GsaI CCCAGC 1 cut(s) 159
GsuI CTGGAG 1 cut(s) 225
HaeII RGCGCY 1 cut(s) 240
HaeIII GGCC 1 cut(s) 202
HhaI GCGC 1 cut(s) 239
Hin1II CATG 4 cut(s) 61, 66, 187, 259
Hin6I GCGC 1 cut(s) 237
HinP1I GCGC 1 cut(s) 237
HinfI GANTC 1 cut(s) 302
HphI GGTGA 1 cut(s) 297
Hpy188I TCNGA 1 cut(s) 110
Hpy188III TCNNGA 3 cut(s) 314, 377, 422
HpyAV CCTTC 1 cut(s) 267
HpyCH4V TGCA 2 cut(s) 37, 322
HpyF3I CTNAG 2 cut(s) 129, 265
Hsp92II CATG 4 cut(s) 61, 66, 187, 259
HspAI GCGC 1 cut(s) 237
Ksp22I TGATCA 1 cut(s) 340
Kzo9I GATC 3 cut(s) 142, 160, 340
LpnPI CCDG 5 cut(s) 141, 189, 216, 225, 255
Lsp1109I GCAGC 1 cut(s) 66
LweI GCATC 1 cut(s) 16
MaeI CTAG 3 cut(s) 50, 167, 314
MalI GATC 3 cut(s) 144, 162, 342
MboI GATC 3 cut(s) 142, 160, 340
MboII GAAGA 3 cut(s) 34, 61, 289
MnlI CCTC 3 cut(s) 21, 289, 353
MseI TTAA 1 cut(s) 177
MslI CAYNNNNRTG 1 cut(s) 254
MspCI CTTAAG 1 cut(s) 176
MspR9I CCNGG 1 cut(s) 204
MvaI CCWGG 1 cut(s) 204
NdeII GATC 3 cut(s) 142, 160, 340
NlaIII CATG 4 cut(s) 61, 66, 187, 259
NlaIV GGNNCC 1 cut(s) 376
PceI AGGCCT 1 cut(s) 202
PcsI WCGNNNNNNNCGW 2 cut(s) 375, 390
PfeI GAWTC 1 cut(s) 302
PkrI GCNGC 1 cut(s) 56
Psp6I CCWGG 1 cut(s) 202
PspFI CCCAGC 1 cut(s) 155
PspGI CCWGG 1 cut(s) 202
PspN4I GGNNCC 1 cut(s) 376
PspPI GGNCC 1 cut(s) 374
RseI CAYNNNNRTG 1 cut(s) 254
SaqAI TTAA 1 cut(s) 177
SatI GCNGC 1 cut(s) 55
Sau3AI GATC 3 cut(s) 142, 160, 340
Sau96I GGNCC 1 cut(s) 374
ScrFI CCNGG 1 cut(s) 204
SetI ASST 3 cut(s) 157, 168, 310
SfaNI GCATC 1 cut(s) 16
SinI GGWCC 1 cut(s) 374
SmiMI CAYNNNNRTG 1 cut(s) 254
SmlI CTYRAG 1 cut(s) 176
SmoI CTYRAG 1 cut(s) 176
SseBI AGGCCT 1 cut(s) 202
SsiI CCGC 1 cut(s) 29
SspMI CTAG 3 cut(s) 50, 167, 314
StuI AGGCCT 1 cut(s) 202
StyD4I CCNGG 1 cut(s) 202
TaqI TCGA 5 cut(s) 98, 351, 358, 369, 404
TfiI GAWTC 1 cut(s) 302
Tru1I TTAA 1 cut(s) 177
Tru9I TTAA 1 cut(s) 177
TseI GCWGC 1 cut(s) 54
TspDTI ATGAA 2 cut(s) 77, 152
TspGWI ACGGA 1 cut(s) 399
Vha464I CTTAAG 1 cut(s) 176
VpaK11BI GGWCC 1 cut(s) 374
XbaI TCTAGA 1 cut(s) 313
XspI CTAG 3 cut(s) 50, 167, 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.