Rorug07G0125800
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Forward (+)
9923450 .. 9927327
3878 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0125800.1

Sequence Viewer

Length: 1425 bp
ATGGGGATCAAAATAGGGGGTGAAATAGAGAGGGTGAATGGGAAGGAGATGAGTTACAGTGAGTTTGTGGAGAGGTACATGGAGAAGAACCAGCCTGTGGTGCTGACAGGTCTCATGGATGATTGGAGGGCTTGCAGAGATTGGGTCACTGATGATGGCAACCCCAATCTTCAATTTTTCGCTACCCATTTTGGAAAATCCAAAGTCCAGGTTGCAGATTGCGGTACTAGAGAATACACGGATCAGAAGAGATTAGAAATGACTGTTGGAGAATTTGTTGAGCAATGGCGTGGGGATTCTGTGCAAGAGCATTGTACCGCTCCAAGTCAGGCAGGTGGGAGCAAGATGTTGCTATATTTGAAGGACTGGCATTTTGTAAAGGAGTACCCAGAATATACAGCATACACAACTCCAATGTTCTTTTGTGATGATTGGCTTAACACATATCTTGACAATTATCGTATGCATAACAACCCCAACATTTACTCTGCAAATAATGACATAAGCTGCTCTGACTATCGATTTGTTTACATGGGAGCAAAAGGCACATGGACTCCTCTTCATGCTGATGTTTTCAGGTCATATAGCTGGTCAGCAAATGTGTGTGGAAAAAAACAGTGGCTTTTCCTGTCTCCTTCTCAAAGTCATCTGGTGTTTGACAGGAATATGAAAAACAGTGTATATAATATCTTTGATGATGTCAGTGAAACAAAATTTCCTGGTTTTGCAAAGGCTATCTGGTTTGAGTGCATTCAAGAACAAAATGACATTATCTTTGTGCCTAGTGGATGGTATCATCAAGTCCATAATTTGGAAGATACCATTTCAATAAACCACAACTGGTTCAATGCTAATAATCTTCGTTGGGTGTGGGATTTGCTTTTGAGGGACTACGATGAGGCTAAGGAGTACATAGAAGACATTAAGGAAATATGTGATGATTTTGAAGGTCTCTGCCAGCGCAACCTTGCCGCTAATACAGGCATGAACTTCAATGATTTCTTAATATTCCTAGCACGTATTTCCTTTGCCAACTTGATTCAACTTCAGTATCTCAGTAGGAAGAATGGGAATCACACTCAGAATTTATCCCCAATAGCTCAGCATTTCACTTTCAACCTTGTATCAATTCAGAAAATTGCATCCAGTATAAGCTCCTTGCAAGATCTGACAGGAAGTCATGGCTTTTATTTGGATTTTAAGGAAACATTAAATGATCCAGGGTTCATTAAACTTTGTGCAGTTTTGGGAAAAACATATGGGACGATACACATGCAACAAAACTGGAATTTTGATACAAAGAAAGCTTGGATAGATGATATGAAAGACTTGGACGTTATAGGAACTTGTAATTCTCAGGTCTGTACTCCCAAAGATCTTGTAATGTTTATACTGCATGCTCTTGCAGAAAGCAATGGTGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

474

Amino Acids

54.91

Weight (kDa)

5.2

Isoelectric Point (pI)

36.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_8 PF13621 21 - 283 4.8e-24 Cupin-like domain
JmjC PF02373 176 - 281 2.9e-15 JmjC domain, hydroxylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0021644)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0001226.1_g000027 Rmu_sc0012097.1_g000015
rosa_roxburghii Rroxscaffold_3G00247830
rosa_rugosa Rorug07G0125800
rosa_samantha Rh7BG252200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 323
Acc36I ACCTGC 1 cut(s) 323
AccB7I CCANNNNNTGG 2 cut(s) 97, 811
AccBSI CCGCTC 1 cut(s) 320
AciI CCGC 3 cut(s) 222, 318, 972
AclWI GGATC 3 cut(s) 14, 249, 1211
AcsI RAATTY 4 cut(s) 272, 713, 1084, 1288
AcuI CTGAAG 1 cut(s) 1031
AfaI GTAC 6 cut(s) 77, 226, 316, 386, 911, 1366
AfiI CCNNNNNNNGG 2 cut(s) 97, 811
AgsI TTSAA 9 cut(s) 173, 361, 755, 828, 847, 947, 994, 1043, 1117
AhdI GACNNNNNGTC 1 cut(s) 1176
AjnI CCWGG 3 cut(s) 207, 718, 1219
AjuI GAANNNNNNNTTGG 2 cut(s) 249, 281
AluBI AGCT 5 cut(s) 507, 588, 1100, 1155, 1307
AluI AGCT 5 cut(s) 507, 588, 1100, 1155, 1307
Alw26I GTCTC 3 cut(s) 116, 636, 956
AlwI GGATC 3 cut(s) 14, 249, 1211
ApeKI GCWGC 1 cut(s) 507
ApoI RAATTY 4 cut(s) 272, 713, 1084, 1288
ArsI GACNNNNNNTTYG 6 cut(s) 356, 388, 506, 538, 758, 790
AspLEI GCGC 1 cut(s) 963
AsuHPI GGTGA 2 cut(s) 32, 46
BaeI ACNNNNGTAYC 2 cut(s) 1034, 1067
BbsI GAAGAC 1 cut(s) 924
BbvI GCAGC 1 cut(s) 494
BccI CCATC 2 cut(s) 149, 783
BcgI CGANNNNNNTGC 2 cut(s) 1255, 1289
BciT130I CCWGG 3 cut(s) 209, 720, 1221
BcoDI GTCTC 3 cut(s) 116, 636, 956
BfaI CTAG 3 cut(s) 228, 783, 1013
BfuAI ACCTGC 1 cut(s) 323
BglII AGATCT 2 cut(s) 1165, 1375
BisI GCNGC 2 cut(s) 508, 972
BlpI GCTNAGC 1 cut(s) 1101
BlsI GCNGC 2 cut(s) 509, 973
Bme1390I CCNGG 3 cut(s) 209, 720, 1221
BmeRI GACNNNNNGTC 1 cut(s) 1176
BmrFI CCNGG 3 cut(s) 209, 720, 1221
BmsI GCATC 1 cut(s) 1151
BpiI GAAGAC 1 cut(s) 924
Bpu10I CCTNAGC 1 cut(s) 903
Bpu1102I GCTNAGC 1 cut(s) 1101
Bsa29I ATCGAT 1 cut(s) 520
BsaAI YACGTR 1 cut(s) 1019
BsaI GGTCTC 2 cut(s) 116, 956
BsaJI CCNNGG 1 cut(s) 1220
BsaXI ACNNNNNCTCC 4 cut(s) 261, 291, 538, 568
Bsc4I CCNNNNNNNGG 2 cut(s) 97, 811
Bse1I ACTGG 4 cut(s) 371, 845, 1146, 1289
Bse3DI GCAATG 2 cut(s) 290, 1420
BseBI CCWGG 3 cut(s) 209, 720, 1221
BseCI ATCGAT 1 cut(s) 520
BseDI CCNNGG 1 cut(s) 1220
BseGI GGATG 3 cut(s) 124, 794, 1142
BseLI CCNNNNNNNGG 2 cut(s) 97, 811
BseMI GCAATG 2 cut(s) 290, 1420
BseMII CTCAG 4 cut(s) 1069, 1094, 1115, 1370
BseNI ACTGG 4 cut(s) 371, 845, 1146, 1289
BseRI GAGGAG 1 cut(s) 546
BseXI GCAGC 1 cut(s) 494
BsgI GTGCAG 1 cut(s) 1260
BshVI ATCGAT 1 cut(s) 520
BslFI GGGAC 2 cut(s) 902, 1276
BslI CCNNNNNNNGG 2 cut(s) 97, 811
BsmAI GTCTC 3 cut(s) 116, 636, 956
BsmFI GGGAC 2 cut(s) 902, 1276
BsmI GAATGC 1 cut(s) 750
Bso31I GGTCTC 2 cut(s) 116, 956
Bsp143I GATC 5 cut(s) 6, 241, 1165, 1216, 1375
Bsp1720I GCTNAGC 1 cut(s) 1101
BspACI CCGC 3 cut(s) 222, 318, 972
BspCNI CTCAG 4 cut(s) 1068, 1093, 1114, 1369
BspDI ATCGAT 1 cut(s) 520
BspMI ACCTGC 1 cut(s) 323
BspPI GGATC 3 cut(s) 14, 249, 1211
BspTNI GGTCTC 2 cut(s) 116, 956
BsrBI CCGCTC 1 cut(s) 320
BsrDI GCAATG 2 cut(s) 290, 1420
BsrI ACTGG 4 cut(s) 371, 845, 1146, 1289
BssECI CCNNGG 1 cut(s) 1220
BssMI GATC 5 cut(s) 6, 241, 1165, 1216, 1375
Bst2UI CCWGG 3 cut(s) 209, 720, 1221
Bst4CI ACNGT 4 cut(s) 59, 265, 618, 677
Bst6I CTCTTC 2 cut(s) 242, 564
BstBAI YACGTR 1 cut(s) 1019
BstC8I GCNNGC 3 cut(s) 133, 959, 1398
BstDEI CTNAG 5 cut(s) 903, 1055, 1080, 1101, 1356
BstF5I GGATG 3 cut(s) 124, 794, 1142
BstHHI GCGC 1 cut(s) 963
BstKTI GATC 5 cut(s) 9, 244, 1168, 1219, 1378
BstMAI GTCTC 3 cut(s) 116, 636, 956
BstMBI GATC 5 cut(s) 6, 241, 1165, 1216, 1375
BstMWI GCNNNNNNNGC 1 cut(s) 100
BstNI CCWGG 3 cut(s) 209, 720, 1221
BstNSI RCATGY 2 cut(s) 1276, 1400
BstSCI CCNGG 3 cut(s) 207, 718, 1219
BstV1I GCAGC 1 cut(s) 494
BstV2I GAAGAC 1 cut(s) 924
BstX2I RGATCY 2 cut(s) 1165, 1375
BstYI RGATCY 2 cut(s) 1165, 1375
Bsu15I ATCGAT 1 cut(s) 520
BsuTUI ATCGAT 1 cut(s) 520
BtsCI GGATG 3 cut(s) 124, 794, 1142
BtsIMutI CAGTG 5 cut(s) 64, 147, 623, 682, 709
BveI ACCTGC 1 cut(s) 323
Cac8I GCNNGC 3 cut(s) 133, 959, 1398
CfoI GCGC 1 cut(s) 963
ClaI ATCGAT 1 cut(s) 520
Csp6I GTAC 6 cut(s) 76, 225, 315, 385, 910, 1365
CviAII CATG 9 cut(s) 79, 115, 532, 549, 563, 985, 1181, 1273, 1397
CviQI GTAC 6 cut(s) 76, 225, 315, 385, 910, 1365
DdeI CTNAG 5 cut(s) 903, 1055, 1080, 1101, 1356
DpnI GATC 5 cut(s) 8, 243, 1167, 1218, 1377
DpnII GATC 5 cut(s) 6, 241, 1165, 1216, 1375
DriI GACNNNNNGTC 1 cut(s) 1176
Eam1104I CTCTTC 2 cut(s) 242, 564
Eam1105I GACNNNNNGTC 1 cut(s) 1176
EarI CTCTTC 2 cut(s) 242, 564
Eco31I GGTCTC 2 cut(s) 116, 956
Eco57I CTGAAG 1 cut(s) 1031
EcoRII CCWGG 3 cut(s) 207, 718, 1219
EcoT22I ATGCAT 1 cut(s) 468
FaeI CATG 9 cut(s) 82, 118, 535, 552, 566, 988, 1184, 1276, 1400
FaqI GGGAC 2 cut(s) 902, 1276
FatI CATG 9 cut(s) 78, 114, 531, 548, 562, 984, 1180, 1272, 1396
FauNDI CATATG 1 cut(s) 1258
Fnu4HI GCNGC 2 cut(s) 508, 972
FokI GGATG 3 cut(s) 131, 801, 1129
Fsp4HI GCNGC 2 cut(s) 508, 972
FspBI CTAG 3 cut(s) 228, 783, 1013
GlaI GCGC 1 cut(s) 962
GluI GCNGC 2 cut(s) 508, 972
HhaI GCGC 1 cut(s) 963
Hin1II CATG 9 cut(s) 82, 118, 535, 552, 566, 988, 1184, 1276, 1400
Hin6I GCGC 1 cut(s) 961
HinP1I GCGC 1 cut(s) 961
HindIII AAGCTT 1 cut(s) 1305
HinfI GANTC 4 cut(s) 296, 553, 1039, 1072
HphI GGTGA 2 cut(s) 32, 46
Hpy166II GTNNAC 1 cut(s) 529
Hpy188I TCNGA 5 cut(s) 246, 514, 1083, 1134, 1170
Hpy188III TCNNGA 2 cut(s) 449, 755
Hpy8I GTNNAC 1 cut(s) 529
HpyAV CCTTC 4 cut(s) 37, 355, 645, 941
HpyCH4III ACNGT 4 cut(s) 59, 265, 618, 677
HpyCH4IV ACGT 2 cut(s) 1018, 1335
HpyF10VI GCNNNNNNNGC 1 cut(s) 100
HpyF3I CTNAG 5 cut(s) 903, 1055, 1080, 1101, 1356
HpySE526I ACGT 2 cut(s) 1018, 1335
Hsp92II CATG 9 cut(s) 82, 118, 535, 552, 566, 988, 1184, 1276, 1400
HspAI GCGC 1 cut(s) 961
Kzo9I GATC 5 cut(s) 6, 241, 1165, 1216, 1375
LmnI GCTCC 4 cut(s) 325, 339, 536, 1160
Lsp1109I GCAGC 1 cut(s) 494
LweI GCATC 1 cut(s) 1151
MaeI CTAG 3 cut(s) 228, 783, 1013
MaeII ACGT 2 cut(s) 1018, 1335
MaeIII GTNAC 2 cut(s) 53, 145
MalI GATC 5 cut(s) 8, 243, 1167, 1218, 1377
MbiI CCGCTC 1 cut(s) 320
MboI GATC 5 cut(s) 6, 241, 1165, 1216, 1375
MboII GAAGA 8 cut(s) 97, 161, 259, 551, 827, 851, 929, 1075
MflI RGATCY 2 cut(s) 1165, 1375
MlyI GAGTC 1 cut(s) 547
MmeI TCCRAC 1 cut(s) 247
MnlI CCTC 6 cut(s) 24, 66, 120, 567, 879, 892
Mph1103I ATGCAT 1 cut(s) 468
MseI TTAA 6 cut(s) 438, 924, 1004, 1200, 1211, 1230
MslI CAYNNNNRTG 1 cut(s) 567
MspR9I CCNGG 3 cut(s) 209, 720, 1221
Mva1269I GAATGC 1 cut(s) 750
MvaI CCWGG 3 cut(s) 209, 720, 1221
MwoI GCNNNNNNNGC 1 cut(s) 100
NdeI CATATG 1 cut(s) 1258
NdeII GATC 5 cut(s) 6, 241, 1165, 1216, 1375
NlaIII CATG 9 cut(s) 82, 118, 535, 552, 566, 988, 1184, 1276, 1400
NmuCI GTSAC 1 cut(s) 145
NsiI ATGCAT 1 cut(s) 468
NspI RCATGY 2 cut(s) 1276, 1400
PaeI GCATGC 1 cut(s) 1400
PaqCI CACCTGC 1 cut(s) 323
PctI GAATGC 1 cut(s) 750
PfeI GAWTC 3 cut(s) 296, 1039, 1072
PflMI CCANNNNNTGG 2 cut(s) 97, 811
PkrI GCNGC 2 cut(s) 509, 973
PleI GAGTC 1 cut(s) 547
PpsI GAGTC 1 cut(s) 547
Ppu21I YACGTR 1 cut(s) 1019
Psp6I CCWGG 3 cut(s) 207, 718, 1219
PspGI CCWGG 3 cut(s) 207, 718, 1219
PsuI RGATCY 2 cut(s) 1165, 1375
RsaI GTAC 6 cut(s) 77, 226, 316, 386, 911, 1366
RsaNI GTAC 6 cut(s) 76, 225, 315, 385, 910, 1365
RseI CAYNNNNRTG 1 cut(s) 567
SaqAI TTAA 6 cut(s) 438, 924, 1004, 1200, 1211, 1230
SatI GCNGC 2 cut(s) 508, 972
Sau3AI GATC 5 cut(s) 6, 241, 1165, 1216, 1375
SchI GAGTC 1 cut(s) 547
ScrFI CCNGG 3 cut(s) 209, 720, 1221
SfaNI GCATC 1 cut(s) 1151
SmiMI CAYNNNNRTG 1 cut(s) 567
SphI GCATGC 1 cut(s) 1400
SsiI CCGC 3 cut(s) 222, 318, 972
SspI AATATT 1 cut(s) 1008
SspMI CTAG 3 cut(s) 228, 783, 1013
StyD4I CCNGG 3 cut(s) 207, 718, 1219
TaaI ACNGT 4 cut(s) 59, 265, 618, 677
TaiI ACGT 2 cut(s) 1021, 1338
TaqI TCGA 1 cut(s) 520
TatI WGTACW 2 cut(s) 909, 1364
TauI GCSGC 1 cut(s) 974
TfiI GAWTC 3 cut(s) 296, 1039, 1072
Tru1I TTAA 6 cut(s) 438, 924, 1004, 1200, 1211, 1230
Tru9I TTAA 6 cut(s) 438, 924, 1004, 1200, 1211, 1230
TscAI CASTG 5 cut(s) 64, 154, 623, 682, 709
TseFI GTSAC 1 cut(s) 145
TseI GCWGC 1 cut(s) 507
Tsp45I GTSAC 1 cut(s) 145
TspDTI ATGAA 5 cut(s) 551, 683, 1001, 1216, 1337
TspGWI ACGGA 1 cut(s) 254
TspRI CASTG 5 cut(s) 64, 154, 623, 682, 709
Van91I CCANNNNNTGG 2 cut(s) 97, 811
XapI RAATTY 4 cut(s) 272, 713, 1084, 1288
XceI RCATGY 2 cut(s) 1276, 1400
XspI CTAG 3 cut(s) 228, 783, 1013
Zsp2I ATGCAT 1 cut(s) 468
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.