Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001241.1

Orthogroup ID

OG0020374

Physical Location & Seq

Genomic Coordinates Reverse (-)

87470 .. 88129

Gene Structure 660 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001241.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

atgaacacgaactggggtgaaaatatgagccgaatcagccaagacaccattgaaaagacacctctgcaagcacgtctagacaagctaacatcgtcgatgggtaaagttggtttggcagttgctttctttgttctcatagtcatgttggtccggtacttcacagggaatacagagaatgagaatcgaaacaaaatgttcaatggcagcaagacaaaatgcaatggcataataaatgctatcattggaattgtatcagctgcacttacaatcgttaaggtggcaattccagaaggtgtaccattagctgtgactctcagtcttgcttactccatgaggagaatgatggttgataatgcaatggtccggaagctctctacttgtgagaccatgggatctacggaaaaaacaggtacactgaccatgaaccagatgaaggtaactaagttttggttggggaaagaatctgtggaagaagaagcttattcatctatttccccttacgttctcaacttgatccaagaaggagtttctctcaacacaactggtagtgtgtacaggcctagcttggattctgaaattgagatctctggcagtccaacggaaaagctattctttcatgggctatacatgggtggaagatggatatggagaaagtggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

219

Amino Acids

24.4

Weight (kDa)

9.2

Isoelectric Point (pI)

34.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020374)

Species	Orthologous Gene IDs
malus_domestica	MD16G1186100.v1.1
rosa_multiflora	Rmu_sc0001241.1_g000021
rosa_roxburghii	Rroxscaffold_5G00334830
rosa_samantha	Rh4CG024100 Rh4CG024700 Rh4CG025400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	363
AclWI	GGATC	2 cut(s)	400, 508
AfaI	GTAC	4 cut(s)	155, 297, 412, 554
AfiI	CCNNNNNNNGG	1 cut(s)	433
AgsI	TTSAA	2 cut(s)	53, 199
AhdI	GACNNNNNGTC	1 cut(s)	315
AjiI	CACGTC	1 cut(s)	74
AluBI	AGCT	7 cut(s)	85, 257, 305, 370, 479, 564, 607
AluI	AGCT	7 cut(s)	85, 257, 305, 370, 479, 564, 607
Alw26I	GTCTC	1 cut(s)	377
AlwI	GGATC	2 cut(s)	400, 508
Aor13HI	TCCGGA	1 cut(s)	363
AoxI	GGCC	1 cut(s)	557
ApeKI	GCWGC	2 cut(s)	204, 257
AspS9I	GGNCC	2 cut(s)	148, 361
AsuHPI	GGTGA	1 cut(s)	29
AvaII	GGWCC	2 cut(s)	148, 361
BbvI	GCAGC	2 cut(s)	216, 244
BccI	CCATC	3 cut(s)	91, 337, 633
BcoDI	GTCTC	1 cut(s)	377
BfaI	CTAG	2 cut(s)	77, 561
BglII	AGATCT	1 cut(s)	582
BisI	GCNGC	2 cut(s)	205, 258
BlsI	GCNGC	2 cut(s)	206, 259
Bme18I	GGWCC	2 cut(s)	148, 361
BmeRI	GACNNNNNGTC	1 cut(s)	315
BmgBI	CACGTC	1 cut(s)	74
BmgT120I	GGNCC	2 cut(s)	148, 361
BmrI	ACTGGG	1 cut(s)	22
BmuI	ACTGGG	1 cut(s)	22
BplI	GAGNNNNNCTC	2 cut(s)	516, 548
BsaI	GGTCTC	1 cut(s)	377
BsaJI	CCNNGG	1 cut(s)	387
BsaWI	WCCGGW	2 cut(s)	150, 363
Bsc4I	CCNNNNNNNGG	1 cut(s)	433
Bse1I	ACTGG	2 cut(s)	17, 547
Bse3DI	GCAATG	2 cut(s)	226, 363
BseAI	TCCGGA	1 cut(s)	363
BseDI	CCNNGG	1 cut(s)	387
BseLI	CCNNNNNNNGG	1 cut(s)	433
BseMI	GCAATG	2 cut(s)	226, 363
BseMII	CTCAG	1 cut(s)	328
BseNI	ACTGG	2 cut(s)	17, 547
BseRI	GAGGAG	1 cut(s)	349
BseXI	GCAGC	2 cut(s)	216, 244
BsgI	GTGCAG	1 cut(s)	243
BshFI	GGCC	1 cut(s)	559
BsiSI	CCGG	2 cut(s)	151, 364
BslI	CCNNNNNNNGG	1 cut(s)	433
BsmAI	GTCTC	1 cut(s)	377
BsnI	GGCC	1 cut(s)	559
Bso31I	GGTCTC	1 cut(s)	377
Bsp13I	TCCGGA	1 cut(s)	363
Bsp1407I	TGTACA	1 cut(s)	552
Bsp143I	GATC	3 cut(s)	392, 513, 582
Bsp19I	CCATGG	1 cut(s)	387
BspANI	GGCC	1 cut(s)	559
BspCNI	CTCAG	1 cut(s)	327
BspEI	TCCGGA	1 cut(s)	363
BspPI	GGATC	2 cut(s)	400, 508
BspTNI	GGTCTC	1 cut(s)	377
BsrDI	GCAATG	2 cut(s)	226, 363
BsrGI	TGTACA	1 cut(s)	552
BsrI	ACTGG	2 cut(s)	17, 547
BssECI	CCNNGG	1 cut(s)	387
BssMI	GATC	3 cut(s)	392, 513, 582
BssT1I	CCWWGG	1 cut(s)	387
BstAUI	TGTACA	1 cut(s)	552
BstC8I	GCNNGC	1 cut(s)	69
BstDEI	CTNAG	2 cut(s)	314, 441
BstDSI	CCRYGG	1 cut(s)	387
BstKTI	GATC	3 cut(s)	395, 516, 585
BstMAI	GTCTC	1 cut(s)	377
BstMBI	GATC	3 cut(s)	392, 513, 582
BstMWI	GCNNNNNNNGC	1 cut(s)	36
BstV1I	GCAGC	2 cut(s)	216, 244
BstX2I	RGATCY	2 cut(s)	392, 582
BstYI	RGATCY	2 cut(s)	392, 582
BsuRI	GGCC	1 cut(s)	559
BtgI	CCRYGG	1 cut(s)	387
BtrI	CACGTC	1 cut(s)	74
BtsIMutI	CAGTG	1 cut(s)	413
Cac8I	GCNNGC	1 cut(s)	69
Cfr13I	GGNCC	2 cut(s)	148, 361
Csp6I	GTAC	4 cut(s)	154, 296, 411, 553
CviAII	CATG	6 cut(s)	142, 331, 388, 421, 617, 628
CviQI	GTAC	4 cut(s)	154, 296, 411, 553
DdeI	CTNAG	2 cut(s)	314, 441
DpnI	GATC	3 cut(s)	394, 515, 584
DpnII	GATC	3 cut(s)	392, 513, 582
DriI	GACNNNNNGTC	1 cut(s)	315
Eam1105I	GACNNNNNGTC	1 cut(s)	315
Eco130I	CCWWGG	1 cut(s)	387
Eco147I	AGGCCT	1 cut(s)	559
Eco31I	GGTCTC	1 cut(s)	377
Eco47I	GGWCC	2 cut(s)	148, 361
EcoT14I	CCWWGG	1 cut(s)	387
ErhI	CCWWGG	1 cut(s)	387
FaeI	CATG	6 cut(s)	145, 334, 391, 424, 620, 631
FalI	AAGNNNNNCTT	2 cut(s)	596, 628
FatI	CATG	6 cut(s)	141, 330, 387, 420, 616, 627
Fnu4HI	GCNGC	2 cut(s)	205, 258
Fsp4HI	GCNGC	2 cut(s)	205, 258
FspBI	CTAG	2 cut(s)	77, 561
GluI	GCNGC	2 cut(s)	205, 258
HaeIII	GGCC	1 cut(s)	559
HapII	CCGG	2 cut(s)	151, 364
Hin1II	CATG	6 cut(s)	145, 334, 391, 424, 620, 631
HindIII	AAGCTT	1 cut(s)	477
HinfI	GANTC	5 cut(s)	33, 181, 310, 461, 569
HpaII	CCGG	2 cut(s)	151, 364
HphI	GGTGA	1 cut(s)	29
Hpy166II	GTNNAC	3 cut(s)	296, 413, 553
Hpy188I	TCNGA	1 cut(s)	574
Hpy188III	TCNNGA	3 cut(s)	77, 287, 364
Hpy8I	GTNNAC	3 cut(s)	296, 413, 553
Hpy99I	CGWCG	1 cut(s)	97
HpyAV	CCTTC	3 cut(s)	284, 427, 515
HpyCH4IV	ACGT	2 cut(s)	73, 501
HpyCH4V	TGCA	4 cut(s)	67, 219, 260, 356
HpyF10VI	GCNNNNNNNGC	1 cut(s)	36
HpyF3I	CTNAG	2 cut(s)	314, 441
HpySE526I	ACGT	2 cut(s)	73, 501
Hsp92II	CATG	6 cut(s)	145, 334, 391, 424, 620, 631
Kpn2I	TCCGGA	1 cut(s)	363
Kzo9I	GATC	3 cut(s)	392, 513, 582
LpnPI	CCDG	9 cut(s)	147, 164, 300, 377, 393, 440, 528, 541, 573
Lsp1109I	GCAGC	2 cut(s)	216, 244
MaeI	CTAG	2 cut(s)	77, 561
MaeII	ACGT	2 cut(s)	73, 501
MaeIII	GTNAC	2 cut(s)	307, 436
MalI	GATC	3 cut(s)	394, 515, 584
MboI	GATC	3 cut(s)	392, 513, 582
MboII	GAAGA	3 cut(s)	482, 485, 648
MflI	RGATCY	2 cut(s)	392, 582
MluCI	AATT	3 cut(s)	246, 282, 576
MlyI	GAGTC	1 cut(s)	304
MmeI	TCCRAC	1 cut(s)	620
MnlI	CCTC	2 cut(s)	72, 327
MroI	TCCGGA	1 cut(s)	363
MseI	TTAA	1 cut(s)	273
MslI	CAYNNNNRTG	1 cut(s)	140
MspA1I	CMGCKG	1 cut(s)	257
MspI	CCGG	2 cut(s)	151, 364
MwoI	GCNNNNNNNGC	1 cut(s)	36
NcoI	CCATGG	1 cut(s)	387
NdeII	GATC	3 cut(s)	392, 513, 582
NlaIII	CATG	6 cut(s)	145, 334, 391, 424, 620, 631
NmuCI	GTSAC	1 cut(s)	307
PceI	AGGCCT	1 cut(s)	559
PfeI	GAWTC	4 cut(s)	33, 181, 461, 569
PkrI	GCNGC	2 cut(s)	206, 259
PleI	GAGTC	1 cut(s)	304
PpsI	GAGTC	1 cut(s)	304
PspPI	GGNCC	2 cut(s)	148, 361
PsuI	RGATCY	2 cut(s)	392, 582
PvuII	CAGCTG	1 cut(s)	257
RsaI	GTAC	4 cut(s)	155, 297, 412, 554
RsaNI	GTAC	4 cut(s)	154, 296, 411, 553
RseI	CAYNNNNRTG	1 cut(s)	140
SaqAI	TTAA	1 cut(s)	273
SatI	GCNGC	2 cut(s)	205, 258
Sau3AI	GATC	3 cut(s)	392, 513, 582
Sau96I	GGNCC	2 cut(s)	148, 361
SchI	GAGTC	1 cut(s)	304
SinI	GGWCC	2 cut(s)	148, 361
SmiMI	CAYNNNNRTG	1 cut(s)	140
Sse9I	AATT	3 cut(s)	246, 282, 576
SseBI	AGGCCT	1 cut(s)	559
SspMI	CTAG	2 cut(s)	77, 561
StuI	AGGCCT	1 cut(s)	559
StyI	CCWWGG	1 cut(s)	387
TaiI	ACGT	2 cut(s)	76, 504
TaqI	TCGA	2 cut(s)	95, 184
TasI	AATT	3 cut(s)	246, 282, 576
TatI	WGTACW	1 cut(s)	552
TfiI	GAWTC	4 cut(s)	33, 181, 461, 569
Tru1I	TTAA	1 cut(s)	273
Tru9I	TTAA	1 cut(s)	273
TscAI	CASTG	1 cut(s)	420
TseFI	GTSAC	1 cut(s)	307
TseI	GCWGC	2 cut(s)	204, 257
Tsp45I	GTSAC	1 cut(s)	307
TspDTI	ATGAA	5 cut(s)	17, 437, 446, 474, 605
TspGWI	ACGGA	2 cut(s)	413, 614
TspRI	CASTG	1 cut(s)	420
VpaK11BI	GGWCC	2 cut(s)	148, 361
XbaI	TCTAGA	1 cut(s)	76
XspI	CTAG	2 cut(s)	77, 561

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.