Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0020374

Physical Location & Seq

Genomic Coordinates Reverse (-)

4628426 .. 4629172

Gene Structure 747 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG024100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGACAGGGGAGAGCGACCATGTTGAGATAAGTGTCACTAAGAGTCCTTTCTTGTTCTCTGGGACTAAAATCGCTGATGGTTATGGCCGGATGCTTGTCACATTAGTAGGGATGAACACAAACTGGGGTGAAATGATGAGCCAAATCAGCCAAGACAACAATGAAAAGACACCTCTGCAAGCACGTTTAGACAAGCTAACTTCGTCCATAGGGAATACAGAGGATGAGAATGGAAACAAAGAGTACAATCTCAGCAAGACAAAATCTGATGACATAATAAATGTCGTCATTGGGATTGTAGTAGCTGCCGTTACAATTGTTGTGGTGGCAATTCCAGAAGGTCTACCATTAGCTGTGACTCTTACTCTTGCTTATTCCATGAAGAGAATGATGGTCGATAACGCAATGGTGCGGAAGCTCTCTGCTTGTGAGACCATGGGATCTGCTACAACAATTTGTACCGACAAAACAGGTACTCTAACCATGAACCAGATGAACGTGACTAAGTTTTGGTTGGGGAAAGAATCTGTGGAAGAAGAAGCTTATTCATCTATTTCTCCTTATGTTCTCGACTTGATCCAAGAAGGGGTTGCTCTCAATACAACTGGTAGTGTGTACAGGCCTAGCTTGGATTCCGAAGTTGAGATCTCTGGCAGTCCAACTGAAAAAGCCATTCTTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

227

Amino Acids

24.53

Weight (kDa)

4.64

Isoelectric Point (pI)

30.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020374)

Species	Orthologous Gene IDs
malus_domestica	MD16G1186100.v1.1
rosa_multiflora	Rmu_sc0001241.1_g000021
rosa_roxburghii	Rroxscaffold_5G00334830
rosa_samantha	Rh4CG024100 Rh4CG024700 Rh4CG025400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	343
AciI	CCGC	1 cut(s)	412
AclWI	GGATC	2 cut(s)	448, 571
AcoI	YGGCCR	1 cut(s)	85
AfaI	GTAC	4 cut(s)	245, 460, 475, 617
AfiI	CCNNNNNNNGG	1 cut(s)	586
AluBI	AGCT	6 cut(s)	196, 305, 353, 418, 542, 627
AluI	AGCT	6 cut(s)	196, 305, 353, 418, 542, 627
Alw26I	GTCTC	1 cut(s)	425
AlwI	GGATC	2 cut(s)	448, 571
AoxI	GGCC	2 cut(s)	85, 620
ApeKI	GCWGC	1 cut(s)	305
AsuHPI	GGTGA	1 cut(s)	140
BbvI	GCAGC	1 cut(s)	292
BccI	CCATC	2 cut(s)	71, 385
BceAI	ACGGC	1 cut(s)	293
BcoDI	GTCTC	1 cut(s)	425
BfaI	CTAG	1 cut(s)	624
BglII	AGATCT	1 cut(s)	645
BisI	GCNGC	1 cut(s)	306
BlsI	GCNGC	1 cut(s)	307
BmrI	ACTGGG	1 cut(s)	133
BmsI	GCATC	1 cut(s)	81
BmuI	ACTGGG	1 cut(s)	133
BsaI	GGTCTC	1 cut(s)	425
BsaJI	CCNNGG	1 cut(s)	435
Bsc4I	CCNNNNNNNGG	1 cut(s)	586
Bse1I	ACTGG	2 cut(s)	128, 610
Bse3DI	GCAATG	1 cut(s)	411
BseDI	CCNNGG	1 cut(s)	435
BseGI	GGATG	3 cut(s)	96, 117, 229
BseLI	CCNNNNNNNGG	1 cut(s)	586
BseMI	GCAATG	1 cut(s)	411
BseMII	CTCAG	1 cut(s)	265
BseNI	ACTGG	2 cut(s)	128, 610
BseXI	GCAGC	1 cut(s)	292
BshFI	GGCC	2 cut(s)	87, 622
BsiSI	CCGG	1 cut(s)	88
BslFI	GGGAC	1 cut(s)	76
BslI	CCNNNNNNNGG	1 cut(s)	586
BsmAI	GTCTC	1 cut(s)	425
BsmFI	GGGAC	1 cut(s)	76
BsnI	GGCC	2 cut(s)	87, 622
Bso31I	GGTCTC	1 cut(s)	425
Bsp1407I	TGTACA	1 cut(s)	615
Bsp143I	GATC	3 cut(s)	440, 576, 645
Bsp19I	CCATGG	1 cut(s)	435
BspACI	CCGC	1 cut(s)	412
BspANI	GGCC	2 cut(s)	87, 622
BspCNI	CTCAG	1 cut(s)	264
BspHI	TCATGA	1 cut(s)	680
BspPI	GGATC	2 cut(s)	448, 571
BspTNI	GGTCTC	1 cut(s)	425
BsrDI	GCAATG	1 cut(s)	411
BsrGI	TGTACA	1 cut(s)	615
BsrI	ACTGG	2 cut(s)	128, 610
BssECI	CCNNGG	1 cut(s)	435
BssMI	GATC	3 cut(s)	440, 576, 645
BssT1I	CCWWGG	1 cut(s)	435
Bst6I	CTCTTC	1 cut(s)	377
BstAUI	TGTACA	1 cut(s)	615
BstC8I	GCNNGC	1 cut(s)	180
BstDEI	CTNAG	3 cut(s)	39, 251, 504
BstDSI	CCRYGG	1 cut(s)	435
BstF5I	GGATG	3 cut(s)	96, 117, 229
BstKTI	GATC	3 cut(s)	443, 579, 648
BstMAI	GTCTC	1 cut(s)	425
BstMBI	GATC	3 cut(s)	440, 576, 645
BstMWI	GCNNNNNNNGC	1 cut(s)	147
BstV1I	GCAGC	1 cut(s)	292
BstX2I	RGATCY	2 cut(s)	440, 645
BstYI	RGATCY	2 cut(s)	440, 645
BsuRI	GGCC	2 cut(s)	87, 622
BtgI	CCRYGG	1 cut(s)	435
BtsCI	GGATG	3 cut(s)	96, 117, 229
Cac8I	GCNNGC	1 cut(s)	180
CciI	TCATGA	1 cut(s)	680
Csp6I	GTAC	4 cut(s)	244, 459, 474, 616
CspCI	CAANNNNNGTGG	2 cut(s)	303, 338
CviAII	CATG	5 cut(s)	20, 379, 436, 484, 681
CviQI	GTAC	4 cut(s)	244, 459, 474, 616
DdeI	CTNAG	3 cut(s)	39, 251, 504
DpnI	GATC	3 cut(s)	442, 578, 647
DpnII	GATC	3 cut(s)	440, 576, 645
EaeI	YGGCCR	1 cut(s)	85
Eam1104I	CTCTTC	1 cut(s)	377
EarI	CTCTTC	1 cut(s)	377
Eco130I	CCWWGG	1 cut(s)	435
Eco147I	AGGCCT	1 cut(s)	622
Eco31I	GGTCTC	1 cut(s)	425
EcoT14I	CCWWGG	1 cut(s)	435
ErhI	CCWWGG	1 cut(s)	435
FaeI	CATG	5 cut(s)	23, 382, 439, 487, 684
FaiI	YATR	9 cut(s)	21, 84, 209, 275, 380, 437, 485, 564, 682
FalI	AAGNNNNNCTT	1 cut(s)	660
FaqI	GGGAC	1 cut(s)	76
FatI	CATG	5 cut(s)	19, 378, 435, 483, 680
FblI	GTMKAC	1 cut(s)	343
Fnu4HI	GCNGC	1 cut(s)	306
FokI	GGATG	3 cut(s)	103, 124, 236
Fsp4HI	GCNGC	1 cut(s)	306
FspBI	CTAG	1 cut(s)	624
GluI	GCNGC	1 cut(s)	306
HaeIII	GGCC	2 cut(s)	87, 622
HapII	CCGG	1 cut(s)	88
Hin1II	CATG	5 cut(s)	23, 382, 439, 487, 684
HindIII	AAGCTT	1 cut(s)	540
HinfI	GANTC	4 cut(s)	43, 358, 524, 632
HpaII	CCGG	1 cut(s)	88
HphI	GGTGA	1 cut(s)	140
Hpy166II	GTNNAC	2 cut(s)	344, 616
Hpy188I	TCNGA	2 cut(s)	268, 637
Hpy188III	TCNNGA	3 cut(s)	335, 569, 681
Hpy8I	GTNNAC	2 cut(s)	344, 616
HpyAV	CCTTC	2 cut(s)	332, 578
HpyCH4IV	ACGT	2 cut(s)	184, 498
HpyCH4V	TGCA	1 cut(s)	178
HpyF10VI	GCNNNNNNNGC	1 cut(s)	147
HpyF3I	CTNAG	3 cut(s)	39, 251, 504
HpySE526I	ACGT	2 cut(s)	184, 498
Hsp92II	CATG	5 cut(s)	23, 382, 439, 487, 684
Kzo9I	GATC	3 cut(s)	440, 576, 645
LpnPI	CCDG	9 cut(s)	45, 101, 109, 348, 456, 503, 591, 604, 636
Lsp1109I	GCAGC	1 cut(s)	292
LweI	GCATC	1 cut(s)	81
MaeI	CTAG	1 cut(s)	624
MaeII	ACGT	2 cut(s)	184, 498
MaeIII	GTNAC	5 cut(s)	34, 97, 310, 355, 499
MalI	GATC	3 cut(s)	442, 578, 647
MboI	GATC	3 cut(s)	440, 576, 645
MboII	GAAGA	3 cut(s)	394, 545, 548
MfeI	CAATTG	1 cut(s)	315
MflI	RGATCY	2 cut(s)	440, 645
MluCI	AATT	3 cut(s)	315, 330, 453
MlyI	GAGTC	2 cut(s)	52, 352
MmeI	TCCRAC	1 cut(s)	683
MnlI	CCTC	2 cut(s)	183, 214
MspI	CCGG	1 cut(s)	88
MunI	CAATTG	1 cut(s)	315
MwoI	GCNNNNNNNGC	1 cut(s)	147
NcoI	CCATGG	1 cut(s)	435
NdeII	GATC	3 cut(s)	440, 576, 645
NlaIII	CATG	5 cut(s)	23, 382, 439, 487, 684
NmuCI	GTSAC	4 cut(s)	34, 97, 355, 499
PagI	TCATGA	1 cut(s)	680
PceI	AGGCCT	1 cut(s)	622
PfeI	GAWTC	2 cut(s)	524, 632
PkrI	GCNGC	1 cut(s)	307
PleI	GAGTC	2 cut(s)	51, 352
PpsI	GAGTC	2 cut(s)	51, 352
PsuI	RGATCY	2 cut(s)	440, 645
RsaI	GTAC	4 cut(s)	245, 460, 475, 617
RsaNI	GTAC	4 cut(s)	244, 459, 474, 616
SatI	GCNGC	1 cut(s)	306
Sau3AI	GATC	3 cut(s)	440, 576, 645
SchI	GAGTC	2 cut(s)	52, 352
SfaNI	GCATC	1 cut(s)	81
Sse9I	AATT	3 cut(s)	315, 330, 453
SseBI	AGGCCT	1 cut(s)	622
SsiI	CCGC	1 cut(s)	412
SspMI	CTAG	1 cut(s)	624
StuI	AGGCCT	1 cut(s)	622
StyI	CCWWGG	1 cut(s)	435
TaiI	ACGT	2 cut(s)	187, 501
TaqI	TCGA	2 cut(s)	396, 570
TasI	AATT	3 cut(s)	315, 330, 453
TatI	WGTACW	2 cut(s)	243, 615
TfiI	GAWTC	2 cut(s)	524, 632
TseFI	GTSAC	4 cut(s)	34, 97, 355, 499
TseI	GCWGC	1 cut(s)	305
Tsp45I	GTSAC	4 cut(s)	34, 97, 355, 499
TspDTI	ATGAA	7 cut(s)	128, 177, 395, 500, 509, 537, 669
XmiI	GTMKAC	1 cut(s)	343
XspI	CTAG	1 cut(s)	624

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.