Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0020374

Physical Location & Seq

Genomic Coordinates Reverse (-)

2160617 .. 2162711

Gene Structure 2095 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00334830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1281 bp

ATGCTTGTCATGTCAGTCGAGATGAACACGAACTGGGATGAAAATCTGAGCCGAATCAGCCAAGACACCATTGAAAAGACACCTCTGCAAGCACATCTAGACAACCTAACATCGTCGATGGGTAAAGTTGGTTTGGCAGTTGCTTTCTTTGTTCTTGTAGTCAGGTTGGTCCTGTACTTCACAGGGAATACAGAGAATGAAAATGGAAACAAAATGTTCAATGGCAGCAAGACAAAATGCAATGGCATAATAAATGCTATCATTGTAATTGTATCAGCTGCACTTACAATCGTTGAGGTGGCATTTCCAGAAGGTCTACCATTAGCTGTGACTCTCAATCTTGCTTACTCCATGAGGAGAATGATGGTTGATAATGCAATGGTCCGAAAGCTCTCTGCTTGTGAGACCATGGGATCTGCTACAACAATTTATACCGACAAAACAGGTACACTGACCATGAACCAGATGAAGGTAACTAGGTTTTGGTTGGGGAAAGCATTTGTGGAAGAAGAAGCTTATTCATCTATTTCCCCTTACGTTCTCAACTTGATCCAAGAAGGAGTTTCTCTCAACACAACTGGTAGTGTGTACAGGCCTAGCTTGGATTCTGAAATTGAGATCTCTGGCAGTCCAACGGAAAAGCTATTCTTTCATGGGCTGTACATGGATGCAAGATGGATATGGAGAAAGTTATCCATGTACTGCAAAGGAGCAGCAGAGATGATACTAGCAATGTGCACAAGTTACTACAATGCGTCTGGACTTGTTAAGGATATGGATGAGAATGAAAAAAGGAAGTTTGAGCATATTATTCAAGAAGAGAGATCAGAGAAAGTTGAGAAAATTTCAGTGATGGCAAGATCTTCTCCGTTTGATAAGCTTATAATGGTGCAGTGCTTGAAACAGAAAGGTCATGTAGTTGCAGTGACCGGTGATGGCCCCAATGATGCACCATTATTGAAAGAAGCTGATATAGGACTCTCTATGGGGATTCAAGGAACAGAAGTGGCTAAAGAGAGCTCAGATATTGTGATCCTGGATGATAACTTTGCTTCAGTTGCGATAGTTTACAATGTGTTCAATGCAAGGAAGCTAGAGAAGAAGAATGTCTTCGAGGGAATACACACCAAGAAGTTGTTTACGGGGATCATTGCGGTGATAATTGTTCTTCAGGTTGTGATGGTGGAGGTTCTTAAGAAATTTGCAGATACAGAGAGGTTGAATTGGGGACAATGGGGCGTATGCATTGGGATTGCAGTCATCTCTTGGCCAATTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

426

Amino Acids

47.3

Weight (kDa)

5.89

Isoelectric Point (pI)

30.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_ATPase_C	PF00689	354 - 425	1.6e-12	Cation transporting ATPase, C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020374)

Species	Orthologous Gene IDs
malus_domestica	MD16G1186100.v1.1
rosa_multiflora	Rmu_sc0001241.1_g000021
rosa_roxburghii	Rroxscaffold_5G00334830
rosa_samantha	Rh4CG024100 Rh4CG024700 Rh4CG025400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	884
AccI	GTMKAC	1 cut(s)	316
AciI	CCGC	1 cut(s)	1154
AclWI	GGATC	4 cut(s)	421, 544, 1027, 1154
AcoI	YGGCCR	1 cut(s)	1268
AcsI	RAATTY	2 cut(s)	843, 1199
AcuI	CTGAAG	2 cut(s)	1038, 1154
AfaI	GTAC	5 cut(s)	176, 448, 590, 662, 701
AfiI	CCNNNNNNNGG	1 cut(s)	469
AflII	CTTAAG	1 cut(s)	1193
AgeI	ACCGGT	1 cut(s)	929
AgsI	TTSAA	8 cut(s)	74, 220, 815, 901, 961, 995, 1081, 1222
AjnI	CCWGG	1 cut(s)	1035
Alw21I	GWGCWC	2 cut(s)	740, 1022
Alw26I	GTCTC	1 cut(s)	398
Alw44I	GTGCAC	1 cut(s)	736
AlwI	GGATC	4 cut(s)	421, 544, 1027, 1154
AoxI	GGCC	3 cut(s)	593, 937, 1268
ApaLI	GTGCAC	1 cut(s)	736
ApeKI	GCWGC	3 cut(s)	225, 278, 713
ApoI	RAATTY	2 cut(s)	843, 1199
AsiGI	ACCGGT	1 cut(s)	929
Asp700I	GAANNNNTTC	1 cut(s)	1109
AspS9I	GGNCC	3 cut(s)	169, 382, 938
AsuHPI	GGTGA	2 cut(s)	944, 1168
AvaII	GGWCC	2 cut(s)	169, 382
BaeGI	GKGCMC	1 cut(s)	740
BalI	TGGCCA	1 cut(s)	1270
BanII	GRGCYC	1 cut(s)	1022
BbsI	GAAGAC	1 cut(s)	1102
Bbv12I	GWGCWC	2 cut(s)	740, 1022
BbvI	GCAGC	3 cut(s)	237, 265, 725
BccI	CCATC	6 cut(s)	112, 358, 669, 847, 929, 1174
BciT130I	CCWGG	1 cut(s)	1037
BcoDI	GTCTC	1 cut(s)	398
BfaI	CTAG	5 cut(s)	98, 477, 597, 728, 1094
BfrI	CTTAAG	1 cut(s)	1193
BglII	AGATCT	2 cut(s)	618, 860
BisI	GCNGC	3 cut(s)	226, 279, 714
BlsI	GCNGC	3 cut(s)	227, 280, 715
Bme1390I	CCNGG	1 cut(s)	1037
Bme18I	GGWCC	2 cut(s)	169, 382
BmgT120I	GGNCC	3 cut(s)	169, 382, 938
BmiI	GGNNCC	1 cut(s)	940
BmrFI	CCNGG	1 cut(s)	1037
BmrI	ACTGGG	1 cut(s)	43
BmsI	GCATC	2 cut(s)	658, 937
BmuI	ACTGGG	1 cut(s)	43
BpiI	GAAGAC	1 cut(s)	1102
BplI	GAGNNNNNCTC	2 cut(s)	552, 584
BsaBI	GATNNNNATC	1 cut(s)	42
BsaI	GGTCTC	1 cut(s)	398
BsaJI	CCNNGG	1 cut(s)	408
BsaWI	WCCGGW	1 cut(s)	929
Bsc4I	CCNNNNNNNGG	1 cut(s)	469
Bse118I	RCCGGY	1 cut(s)	929
Bse1I	ACTGG	2 cut(s)	38, 583
Bse3DI	GCAATG	4 cut(s)	247, 384, 738, 1149
Bse8I	GATNNNNATC	1 cut(s)	42
BseBI	CCWGG	1 cut(s)	1037
BseDI	CCNNGG	1 cut(s)	408
BseGI	GGATG	4 cut(s)	43, 673, 784, 1045
BseJI	GATNNNNATC	1 cut(s)	42
BseLI	CCNNNNNNNGG	1 cut(s)	469
BseMI	GCAATG	4 cut(s)	247, 384, 738, 1149
BseMII	CTCAG	2 cut(s)	38, 1035
BseNI	ACTGG	2 cut(s)	38, 583
BseRI	GAGGAG	1 cut(s)	370
BseSI	GKGCMC	1 cut(s)	740
BseXI	GCAGC	3 cut(s)	237, 265, 725
BsgI	GTGCAG	2 cut(s)	264, 911
BshFI	GGCC	3 cut(s)	595, 939, 1270
BshTI	ACCGGT	1 cut(s)	929
BsiHKAI	GWGCWC	2 cut(s)	740, 1022
BsiSI	CCGG	1 cut(s)	930
BslFI	GGGAC	1 cut(s)	1242
BslI	CCNNNNNNNGG	1 cut(s)	469
BsmAI	GTCTC	1 cut(s)	398
BsmFI	GGGAC	1 cut(s)	1242
BsnI	GGCC	3 cut(s)	595, 939, 1270
Bso31I	GGTCTC	1 cut(s)	398
Bsp1286I	GDGCHC	2 cut(s)	740, 1022
Bsp1407I	TGTACA	2 cut(s)	588, 660
Bsp143I	GATC	7 cut(s)	413, 549, 618, 824, 860, 1032, 1146
Bsp19I	CCATGG	1 cut(s)	408
BspACI	CCGC	1 cut(s)	1154
BspANI	GGCC	3 cut(s)	595, 939, 1270
BspCNI	CTCAG	2 cut(s)	39, 1034
BspLI	GGNNCC	1 cut(s)	940
BspPI	GGATC	4 cut(s)	421, 544, 1027, 1154
BspTI	CTTAAG	1 cut(s)	1193
BspTNI	GGTCTC	1 cut(s)	398
BsrDI	GCAATG	4 cut(s)	247, 384, 738, 1149
BsrFI	RCCGGY	1 cut(s)	929
BsrGI	TGTACA	2 cut(s)	588, 660
BsrI	ACTGG	2 cut(s)	38, 583
BssAI	RCCGGY	1 cut(s)	929
BssECI	CCNNGG	1 cut(s)	408
BssMI	GATC	7 cut(s)	413, 549, 618, 824, 860, 1032, 1146
BssT1I	CCWWGG	1 cut(s)	408
Bst2UI	CCWGG	1 cut(s)	1037
Bst6I	CTCTTC	1 cut(s)	813
BstAFI	CTTAAG	1 cut(s)	1193
BstAUI	TGTACA	2 cut(s)	588, 660
BstC8I	GCNNGC	1 cut(s)	90
BstDEI	CTNAG	2 cut(s)	47, 1021
BstDSI	CCRYGG	1 cut(s)	408
BstF5I	GGATG	4 cut(s)	43, 673, 784, 1045
BstKTI	GATC	7 cut(s)	416, 552, 621, 827, 863, 1035, 1149
BstMAI	GTCTC	1 cut(s)	398
BstMBI	GATC	7 cut(s)	413, 549, 618, 824, 860, 1032, 1146
BstMWI	GCNNNNNNNGC	2 cut(s)	57, 1058
BstNI	CCWGG	1 cut(s)	1037
BstSCI	CCNGG	1 cut(s)	1035
BstSLI	GKGCMC	1 cut(s)	740
BstV1I	GCAGC	3 cut(s)	237, 265, 725
BstV2I	GAAGAC	1 cut(s)	1102
BstX2I	RGATCY	3 cut(s)	413, 618, 860
BstYI	RGATCY	3 cut(s)	413, 618, 860
BsuRI	GGCC	3 cut(s)	595, 939, 1270
BtgI	CCRYGG	1 cut(s)	408
BtsCI	GGATG	4 cut(s)	43, 673, 784, 1045
BtsI	GCAGTG	2 cut(s)	899, 930
BtsIMutI	CAGTG	4 cut(s)	449, 855, 899, 930
Cac8I	GCNNGC	1 cut(s)	90
Cfr10I	RCCGGY	1 cut(s)	929
Cfr13I	GGNCC	3 cut(s)	169, 382, 938
CseI	GACGC	1 cut(s)	744
Csp6I	GTAC	5 cut(s)	175, 447, 589, 661, 700
CspAI	ACCGGT	1 cut(s)	929
CviAII	CATG	8 cut(s)	10, 352, 409, 457, 653, 664, 697, 914
CviQI	GTAC	5 cut(s)	175, 447, 589, 661, 700
DdeI	CTNAG	2 cut(s)	47, 1021
DpnI	GATC	7 cut(s)	415, 551, 620, 826, 862, 1034, 1148
DpnII	GATC	7 cut(s)	413, 549, 618, 824, 860, 1032, 1146
EaeI	YGGCCR	1 cut(s)	1268
Eam1104I	CTCTTC	1 cut(s)	813
EarI	CTCTTC	1 cut(s)	813
Ecl136II	GAGCTC	1 cut(s)	1020
Eco130I	CCWWGG	1 cut(s)	408
Eco147I	AGGCCT	1 cut(s)	595
Eco24I	GRGCYC	1 cut(s)	1022
Eco31I	GGTCTC	1 cut(s)	398
Eco47I	GGWCC	2 cut(s)	169, 382
Eco53kI	GAGCTC	1 cut(s)	1020
Eco57I	CTGAAG	2 cut(s)	1038, 1154
EcoICRI	GAGCTC	1 cut(s)	1020
EcoRII	CCWGG	1 cut(s)	1035
EcoT14I	CCWWGG	1 cut(s)	408
EcoT22I	ATGCAT	1 cut(s)	1247
EcoT38I	GRGCYC	1 cut(s)	1022
ErhI	CCWWGG	1 cut(s)	408
FaeI	CATG	8 cut(s)	13, 355, 412, 460, 656, 667, 700, 917
FalI	AAGNNNNNCTT	4 cut(s)	632, 664, 1094, 1126
FaqI	GGGAC	1 cut(s)	1242
FatI	CATG	8 cut(s)	9, 351, 408, 456, 652, 663, 696, 913
FblI	GTMKAC	1 cut(s)	316
Fnu4HI	GCNGC	3 cut(s)	226, 279, 714
FokI	GGATG	4 cut(s)	50, 680, 791, 1052
FriOI	GRGCYC	1 cut(s)	1022
Fsp4HI	GCNGC	3 cut(s)	226, 279, 714
FspBI	CTAG	5 cut(s)	98, 477, 597, 728, 1094
GluI	GCNGC	3 cut(s)	226, 279, 714
HaeIII	GGCC	3 cut(s)	595, 939, 1270
HapII	CCGG	1 cut(s)	930
HgaI	GACGC	1 cut(s)	744
Hin1II	CATG	8 cut(s)	13, 355, 412, 460, 656, 667, 700, 917
HindIII	AAGCTT	2 cut(s)	513, 878
HinfI	GANTC	5 cut(s)	54, 331, 605, 978, 991
HpaII	CCGG	1 cut(s)	930
HphI	GGTGA	2 cut(s)	944, 1168
Hpy166II	GTNNAC	6 cut(s)	317, 449, 589, 738, 1069, 1140
Hpy188I	TCNGA	5 cut(s)	48, 386, 610, 829, 1024
Hpy188III	TCNNGA	5 cut(s)	19, 98, 308, 759, 815
Hpy8I	GTNNAC	6 cut(s)	317, 449, 589, 738, 1069, 1140
Hpy99I	CGWCG	1 cut(s)	118
HpyAV	CCTTC	3 cut(s)	305, 463, 551
HpyCH4IV	ACGT	1 cut(s)	537
HpyF10VI	GCNNNNNNNGC	2 cut(s)	57, 1058
HpyF3I	CTNAG	2 cut(s)	47, 1021
HpySE526I	ACGT	1 cut(s)	537
Hsp92II	CATG	8 cut(s)	13, 355, 412, 460, 656, 667, 700, 917
Kzo9I	GATC	7 cut(s)	413, 549, 618, 824, 860, 1032, 1146
LmnI	GCTCC	1 cut(s)	710
Lsp1109I	GCAGC	3 cut(s)	237, 265, 725
LweI	GCATC	2 cut(s)	658, 937
MaeI	CTAG	5 cut(s)	98, 477, 597, 728, 1094
MaeII	ACGT	1 cut(s)	537
MaeIII	GTNAC	4 cut(s)	328, 472, 743, 925
MalI	GATC	7 cut(s)	415, 551, 620, 826, 862, 1034, 1148
MboI	GATC	7 cut(s)	413, 549, 618, 824, 860, 1032, 1146
MboII	GAAGA	8 cut(s)	518, 521, 830, 855, 1102, 1111, 1114, 1160
MfeI	CAATTG	1 cut(s)	1272
MflI	RGATCY	3 cut(s)	413, 618, 860
MhlI	GDGCHC	2 cut(s)	740, 1022
MlsI	TGGCCA	1 cut(s)	1270
MluCI	AATT	8 cut(s)	267, 426, 612, 843, 1161, 1199, 1222, 1272
MluNI	TGGCCA	1 cut(s)	1270
MlyI	GAGTC	2 cut(s)	325, 972
MmeI	TCCRAC	1 cut(s)	656
MnlI	CCTC	6 cut(s)	93, 289, 348, 1108, 1180, 1209
Mox20I	TGGCCA	1 cut(s)	1270
Mph1103I	ATGCAT	1 cut(s)	1247
MroXI	GAANNNNTTC	1 cut(s)	1109
MscI	TGGCCA	1 cut(s)	1270
MseI	TTAA	2 cut(s)	768, 1194
MslI	CAYNNNNRTG	1 cut(s)	1154
Msp20I	TGGCCA	1 cut(s)	1270
MspA1I	CMGCKG	1 cut(s)	278
MspCI	CTTAAG	1 cut(s)	1193
MspI	CCGG	1 cut(s)	930
MspR9I	CCNGG	1 cut(s)	1037
MunI	CAATTG	1 cut(s)	1272
MvaI	CCWGG	1 cut(s)	1037
MwoI	GCNNNNNNNGC	2 cut(s)	57, 1058
NcoI	CCATGG	1 cut(s)	408
NdeII	GATC	7 cut(s)	413, 549, 618, 824, 860, 1032, 1146
NlaIII	CATG	8 cut(s)	13, 355, 412, 460, 656, 667, 700, 917
NlaIV	GGNNCC	1 cut(s)	940
NmuCI	GTSAC	2 cut(s)	328, 925
NsiI	ATGCAT	1 cut(s)	1247
PceI	AGGCCT	1 cut(s)	595
PdmI	GAANNNNTTC	1 cut(s)	1109
PfeI	GAWTC	3 cut(s)	54, 605, 991
PfoI	TCCNGGA	1 cut(s)	1035
PinAI	ACCGGT	1 cut(s)	929
PkrI	GCNGC	3 cut(s)	227, 280, 715
PleI	GAGTC	2 cut(s)	325, 972
PpsI	GAGTC	2 cut(s)	325, 972
PsiI	TTATAA	1 cut(s)	884
Psp124BI	GAGCTC	1 cut(s)	1022
Psp6I	CCWGG	1 cut(s)	1035
PspGI	CCWGG	1 cut(s)	1035
PspN4I	GGNNCC	1 cut(s)	940
PspPI	GGNCC	3 cut(s)	169, 382, 938
PsuI	RGATCY	3 cut(s)	413, 618, 860
PvuII	CAGCTG	1 cut(s)	278
RsaI	GTAC	5 cut(s)	176, 448, 590, 662, 701
RsaNI	GTAC	5 cut(s)	175, 447, 589, 661, 700
RseI	CAYNNNNRTG	1 cut(s)	1154
SacI	GAGCTC	1 cut(s)	1022
SaqAI	TTAA	2 cut(s)	768, 1194
SatI	GCNGC	3 cut(s)	226, 279, 714
Sau3AI	GATC	7 cut(s)	413, 549, 618, 824, 860, 1032, 1146
Sau96I	GGNCC	3 cut(s)	169, 382, 938
SchI	GAGTC	2 cut(s)	325, 972
ScrFI	CCNGG	1 cut(s)	1037
SduI	GDGCHC	2 cut(s)	740, 1022
SfaNI	GCATC	2 cut(s)	658, 937
SinI	GGWCC	2 cut(s)	169, 382
SmiMI	CAYNNNNRTG	1 cut(s)	1154
SmlI	CTYRAG	1 cut(s)	1193
SmoI	CTYRAG	1 cut(s)	1193
Sse9I	AATT	8 cut(s)	267, 426, 612, 843, 1161, 1199, 1222, 1272
SseBI	AGGCCT	1 cut(s)	595
SsiI	CCGC	1 cut(s)	1154
SspMI	CTAG	5 cut(s)	98, 477, 597, 728, 1094
SstI	GAGCTC	1 cut(s)	1022
StuI	AGGCCT	1 cut(s)	595
StyD4I	CCNGG	1 cut(s)	1035
StyI	CCWWGG	1 cut(s)	408
TaiI	ACGT	1 cut(s)	540
TaqI	TCGA	3 cut(s)	18, 116, 1113
TasI	AATT	8 cut(s)	267, 426, 612, 843, 1161, 1199, 1222, 1272
TatI	WGTACW	4 cut(s)	174, 588, 660, 699
TfiI	GAWTC	3 cut(s)	54, 605, 991
Tru1I	TTAA	2 cut(s)	768, 1194
Tru9I	TTAA	2 cut(s)	768, 1194
TscAI	CASTG	4 cut(s)	456, 855, 899, 930
TseFI	GTSAC	2 cut(s)	328, 925
TseI	GCWGC	3 cut(s)	225, 278, 713
Tsp45I	GTSAC	2 cut(s)	328, 925
TspDTI	ATGAA	8 cut(s)	38, 54, 213, 473, 482, 510, 641, 801
TspGWI	ACGGA	2 cut(s)	650, 858
TspRI	CASTG	4 cut(s)	456, 855, 899, 930
Vha464I	CTTAAG	1 cut(s)	1193
VneI	GTGCAC	1 cut(s)	736
VpaK11BI	GGWCC	2 cut(s)	169, 382
XapI	RAATTY	2 cut(s)	843, 1199
XbaI	TCTAGA	1 cut(s)	97
XmiI	GTMKAC	1 cut(s)	316
XmnI	GAANNNNTTC	1 cut(s)	1109
XspI	CTAG	5 cut(s)	98, 477, 597, 728, 1094
Zsp2I	ATGCAT	1 cut(s)	1247

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.