Rmu_sc0001336.1_g000011

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001336.1
OG0020001
Physical Location & Seq
Forward (+)
31768 .. 32745
978 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 681 bp
atgccgccgagaacctcatcttcaacttcccctccttcaacttccacaacctcaccttcctcgcgcgactcccacatcagcaactgtgtcgtcggcctcaccggcgaactccccgtccccacctcctccactggctcctccctctacaactcccccatccgcttcttcgaccatgtcaattttcctcaatcagcccccaattcaaccctagccactgccacaatagccctcaagacctcgaccgtcgccaccgcgcttgacaagttctactctgagttccactgcatttcggagttcttccacaccacgttcgcgaagaggattcagaattgcgagggtggaagaggcgacgagaatggcgtcgtttctgacccggagtccggcgtgattgttcccttggagaagagcggcgagcagcagcatctggcgaaggtcgtgcagcggaagaagtacccacagcgattgaaagagctcgtccggttggaggctttacagagcgagaatgggttgctgagaaaagctgtggaggatctcaggcaagaaattgccggagggagtttgaattcggggatgtaccgtggaatggagagtagtgggaattggggctccagcaacaatgagaagaagtcgcaggagggagatgtgagtgaggagttgaagaaggcactgatgggtgcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

226

Amino Acids

24.4

Weight (kDa)

6.53

Isoelectric Point (pI)

54.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020001)

Species Orthologous Gene IDs
rosa_laevigata RLG00000008319
rosa_multiflora Rmu_sc0001336.1_g000011
rosa_samantha Rh2AG524300 Rh2CG509000 Rh2DG370200 Rh5AG431400 Rh6AG298200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 408
AccII CGCG 4 cut(s) 64, 66, 254, 314
AciI CCGC 5 cut(s) 5, 160, 252, 408, 442
AclWI GGATC 1 cut(s) 537
AcsI RAATTY 1 cut(s) 562
AcyI GRCGYC 1 cut(s) 360
AfaI GTAC 2 cut(s) 452, 575
AfiI CCNNNNNNNGG 3 cut(s) 380, 484, 583
AgsI TTSAA 6 cut(s) 24, 39, 204, 466, 562, 658
AhdI GACNNNNNGTC 1 cut(s) 376
AloI GAACNNNNNNTCC 2 cut(s) 99, 131
AluBI AGCT 2 cut(s) 472, 521
AluI AGCT 2 cut(s) 472, 521
Alw21I GWGCWC 1 cut(s) 474
AlwI GGATC 1 cut(s) 537
AlwNI CAGNNNCTG 2 cut(s) 84, 424
AoxI GGCC 1 cut(s) 94
ApeKI GCWGC 3 cut(s) 415, 418, 439
ApoI RAATTY 1 cut(s) 562
ArsI GACNNNNNNTTYG 2 cut(s) 99, 131
AspLEI GCGC 2 cut(s) 66, 256
AsuC2I CCSGG 1 cut(s) 374
AsuHPI GGTGA 2 cut(s) 45, 91
BanII GRGCYC 2 cut(s) 474, 608
Bbv12I GWGCWC 1 cut(s) 474
BbvI GCAGC 3 cut(s) 427, 430, 451
BccI CCATC 2 cut(s) 164, 664
BcgI CGANNNNNNTGC 4 cut(s) 70, 104, 418, 452
BcnI CCSGG 1 cut(s) 374
BfaI CTAG 1 cut(s) 209
BglI GCCNNNNNGGC 1 cut(s) 102
BisI GCNGC 5 cut(s) 5, 409, 416, 419, 440
BlsI GCNGC 5 cut(s) 6, 410, 417, 420, 441
Bme1390I CCNGG 1 cut(s) 374
BmeRI GACNNNNNGTC 1 cut(s) 376
BmiI GGNNCC 2 cut(s) 136, 607
BmrFI CCNGG 1 cut(s) 374
BmsI GCATC 1 cut(s) 430
BpmI CTGGAG 1 cut(s) 592
BpuEI CTTGAG 1 cut(s) 215
BpuMI CCSGG 1 cut(s) 374
BsaHI GRCGYC 1 cut(s) 360
BsaJI CCNNGG 2 cut(s) 396, 577
BsaWI WCCGGW 1 cut(s) 477
BsaXI ACNNNNNCTCC 2 cut(s) 16, 46
Bsc4I CCNNNNNNNGG 3 cut(s) 380, 484, 583
Bse118I RCCGGY 1 cut(s) 101
Bse1I ACTGG 1 cut(s) 136
BseDI CCNNGG 2 cut(s) 396, 577
BseGI GGATG 2 cut(s) 156, 576
BseLI CCNNNNNNNGG 3 cut(s) 380, 484, 583
BseMII CTCAG 3 cut(s) 264, 503, 547
BseNI ACTGG 1 cut(s) 136
BseRI GAGGAG 3 cut(s) 115, 127, 665
BseXI GCAGC 3 cut(s) 427, 430, 451
BsgI GTGCAG 1 cut(s) 458
Bsh1236I CGCG 4 cut(s) 64, 66, 254, 314
Bsh1285I CGRYCG 1 cut(s) 243
BshFI GGCC 1 cut(s) 96
BsiEI CGRYCG 1 cut(s) 243
BsiHKAI GWGCWC 1 cut(s) 474
BsiSI CCGG 5 cut(s) 102, 374, 381, 478, 549
BslFI GGGAC 1 cut(s) 101
BslI CCNNNNNNNGG 3 cut(s) 380, 484, 583
BsmFI GGGAC 1 cut(s) 101
BsnI GGCC 1 cut(s) 96
Bsp1286I GDGCHC 2 cut(s) 474, 608
Bsp143I GATC 1 cut(s) 529
Bsp68I TCGCGA 1 cut(s) 314
BspACI CCGC 5 cut(s) 5, 160, 252, 408, 442
BspANI GGCC 1 cut(s) 96
BspCNI CTCAG 3 cut(s) 265, 504, 546
BspFNI CGCG 4 cut(s) 64, 66, 254, 314
BspLI GGNNCC 2 cut(s) 136, 607
BspPI GGATC 1 cut(s) 537
BspQI GCTCTTC 1 cut(s) 398
BsrBI CCGCTC 1 cut(s) 408
BsrFI RCCGGY 1 cut(s) 101
BsrI ACTGG 1 cut(s) 136
BssAI RCCGGY 1 cut(s) 101
BssECI CCNNGG 2 cut(s) 396, 577
BssMI GATC 1 cut(s) 529
BssNI GRCGYC 1 cut(s) 360
BssT1I CCWWGG 1 cut(s) 396
Bst4CI ACNGT 3 cut(s) 86, 244, 578
Bst6I CTCTTC 3 cut(s) 311, 337, 398
BstACI GRCGYC 1 cut(s) 360
BstC8I GCNNGC 1 cut(s) 413
BstDEI CTNAG 3 cut(s) 273, 512, 533
BstDSI CCRYGG 1 cut(s) 577
BstF5I GGATG 2 cut(s) 156, 576
BstFNI CGCG 4 cut(s) 64, 66, 254, 314
BstHHI GCGC 2 cut(s) 66, 256
BstKTI GATC 1 cut(s) 532
BstMBI GATC 1 cut(s) 529
BstMCI CGRYCG 1 cut(s) 243
BstMWI GCNNNNNNNGC 2 cut(s) 102, 224
BstSCI CCNGG 1 cut(s) 372
BstUI CGCG 4 cut(s) 64, 66, 254, 314
BstV1I GCAGC 3 cut(s) 427, 430, 451
BstX2I RGATCY 1 cut(s) 529
BstYI RGATCY 1 cut(s) 529
BsuRI GGCC 1 cut(s) 96
BtgI CCRYGG 1 cut(s) 577
BtsCI GGATG 2 cut(s) 156, 576
BtsI GCAGTG 2 cut(s) 213, 280
BtsIMutI CAGTG 4 cut(s) 129, 213, 280, 665
BtuMI TCGCGA 1 cut(s) 314
Cac8I GCNNGC 1 cut(s) 413
CaiI CAGNNNCTG 2 cut(s) 84, 424
CfoI GCGC 2 cut(s) 66, 256
Cfr10I RCCGGY 1 cut(s) 101
CseI GACGC 1 cut(s) 349
Csp6I GTAC 2 cut(s) 451, 574
CspCI CAANNNNNGTGG 4 cut(s) 238, 273, 444, 479
CviAII CATG 1 cut(s) 173
CviJI RGCY 9 cut(s) 96, 135, 194, 212, 227, 472, 488, 521, 606
CviKI_1 RGCY 9 cut(s) 96, 135, 194, 212, 227, 472, 488, 521, 606
CviQI GTAC 2 cut(s) 451, 574
DdeI CTNAG 3 cut(s) 273, 512, 533
DpnI GATC 1 cut(s) 531
DpnII GATC 1 cut(s) 529
DriI GACNNNNNGTC 1 cut(s) 376
Eam1104I CTCTTC 3 cut(s) 311, 337, 398
Eam1105I GACNNNNNGTC 1 cut(s) 376
EarI CTCTTC 3 cut(s) 311, 337, 398
Ecl136II GAGCTC 1 cut(s) 472
Eco130I CCWWGG 1 cut(s) 396
Eco24I GRGCYC 2 cut(s) 474, 608
Eco53kI GAGCTC 1 cut(s) 472
EcoICRI GAGCTC 1 cut(s) 472
EcoRI GAATTC 1 cut(s) 562
EcoT14I CCWWGG 1 cut(s) 396
EcoT38I GRGCYC 2 cut(s) 474, 608
ErhI CCWWGG 1 cut(s) 396
FaeI CATG 1 cut(s) 176
FaiI YATR 1 cut(s) 174
FaqI GGGAC 1 cut(s) 101
FatI CATG 1 cut(s) 172
Fnu4HI GCNGC 5 cut(s) 5, 409, 416, 419, 440
FokI GGATG 2 cut(s) 143, 583
FriOI GRGCYC 2 cut(s) 474, 608
Fsp4HI GCNGC 5 cut(s) 5, 409, 416, 419, 440
FspBI CTAG 1 cut(s) 209
GlaI GCGC 2 cut(s) 65, 255
GluI GCNGC 5 cut(s) 5, 409, 416, 419, 440
GsuI CTGGAG 1 cut(s) 592
HaeIII GGCC 1 cut(s) 96
HapII CCGG 5 cut(s) 102, 374, 381, 478, 549
HgaI GACGC 1 cut(s) 349
HhaI GCGC 2 cut(s) 66, 256
Hin1I GRCGYC 1 cut(s) 360
Hin1II CATG 1 cut(s) 176
Hin6I GCGC 2 cut(s) 64, 254
HinP1I GCGC 2 cut(s) 64, 254
HinfI GANTC 3 cut(s) 68, 322, 377
HpaII CCGG 5 cut(s) 102, 374, 381, 478, 549
HphI GGTGA 2 cut(s) 45, 91
Hpy188I TCNGA 4 cut(s) 274, 292, 327, 370
Hpy188III TCNNGA 2 cut(s) 232, 313
Hpy99I CGWCG 4 cut(s) 95, 248, 353, 365
HpyAV CCTTC 4 cut(s) 45, 66, 424, 655
HpyCH4III ACNGT 3 cut(s) 86, 244, 578
HpyCH4IV ACGT 1 cut(s) 308
HpyCH4V TGCA 2 cut(s) 285, 439
HpyF10VI GCNNNNNNNGC 2 cut(s) 102, 224
HpyF3I CTNAG 3 cut(s) 273, 512, 533
HpySE526I ACGT 1 cut(s) 308
Hsp92I GRCGYC 1 cut(s) 360
Hsp92II CATG 1 cut(s) 176
HspAI GCGC 2 cut(s) 64, 254
Kzo9I GATC 1 cut(s) 529
LguI GCTCTTC 1 cut(s) 398
LmnI GCTCC 2 cut(s) 140, 611
Lsp1109I GCAGC 3 cut(s) 427, 430, 451
LweI GCATC 1 cut(s) 430
MaeI CTAG 1 cut(s) 209
MaeII ACGT 1 cut(s) 308
MalI GATC 1 cut(s) 531
MbiI CCGCTC 1 cut(s) 408
MboI GATC 1 cut(s) 529
MboII GAAGA 9 cut(s) 12, 157, 289, 328, 354, 415, 457, 634, 670
MflI RGATCY 1 cut(s) 529
MhlI GDGCHC 2 cut(s) 474, 608
MluCI AATT 6 cut(s) 178, 199, 328, 543, 562, 598
MlyI GAGTC 2 cut(s) 62, 386
MmeI TCCRAC 1 cut(s) 462
MspA1I CMGCKG 1 cut(s) 442
MspI CCGG 5 cut(s) 102, 374, 381, 478, 549
MspR9I CCNGG 1 cut(s) 374
MvnI CGCG 4 cut(s) 64, 66, 254, 314
MwoI GCNNNNNNNGC 2 cut(s) 102, 224
NciI CCSGG 1 cut(s) 374
NdeII GATC 1 cut(s) 529
NlaIII CATG 1 cut(s) 176
NlaIV GGNNCC 2 cut(s) 136, 607
NmeAIII GCCGAG 1 cut(s) 33
NruI TCGCGA 1 cut(s) 314
PciSI GCTCTTC 1 cut(s) 398
PcsI WCGNNNNNNNCGW 1 cut(s) 357
PfeI GAWTC 1 cut(s) 322
PflFI GACNNNGTC 1 cut(s) 173
PkrI GCNGC 5 cut(s) 6, 410, 417, 420, 441
PleI GAGTC 2 cut(s) 62, 385
PpsI GAGTC 2 cut(s) 62, 385
Psp124BI GAGCTC 1 cut(s) 474
PspN4I GGNNCC 2 cut(s) 136, 607
PstNI CAGNNNCTG 2 cut(s) 84, 424
PsuI RGATCY 1 cut(s) 529
PsyI GACNNNGTC 1 cut(s) 173
RruI TCGCGA 1 cut(s) 314
RsaI GTAC 2 cut(s) 452, 575
RsaNI GTAC 2 cut(s) 451, 574
SacI GAGCTC 1 cut(s) 474
SapI GCTCTTC 1 cut(s) 398
SatI GCNGC 5 cut(s) 5, 409, 416, 419, 440
Sau3AI GATC 1 cut(s) 529
SchI GAGTC 2 cut(s) 62, 386
ScrFI CCNGG 1 cut(s) 374
SduI GDGCHC 2 cut(s) 474, 608
SetI ASST 9 cut(s) 17, 53, 58, 125, 239, 311, 435, 474, 523
SfaNI GCATC 1 cut(s) 430
SgrAI CRCCGGYG 1 cut(s) 101
SmlI CTYRAG 1 cut(s) 230
SmoI CTYRAG 1 cut(s) 230
Sse9I AATT 6 cut(s) 178, 199, 328, 543, 562, 598
SsiI CCGC 5 cut(s) 5, 160, 252, 408, 442
SspMI CTAG 1 cut(s) 209
SstI GAGCTC 1 cut(s) 474
StyD4I CCNGG 1 cut(s) 372
StyI CCWWGG 1 cut(s) 396
TaaI ACNGT 3 cut(s) 86, 244, 578
TaiI ACGT 1 cut(s) 311
TaqI TCGA 2 cut(s) 168, 239
TasI AATT 6 cut(s) 178, 199, 328, 543, 562, 598
TauI GCSGC 2 cut(s) 7, 411
TfiI GAWTC 1 cut(s) 322
TscAI CASTG 4 cut(s) 136, 220, 287, 672
TseI GCWGC 3 cut(s) 415, 418, 439
TspRI CASTG 4 cut(s) 136, 220, 287, 672
Tth111I GACNNNGTC 1 cut(s) 173
XapI RAATTY 1 cut(s) 562
XspI CTAG 1 cut(s) 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.