Rmu_sc0001361.1_g000015

PAN-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001361.1
OG0019889
Physical Location & Seq
Reverse (-)
54318 .. 55549
1232 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001361.1_g000015.1.cds

Sequence Viewer

Length: 561 bp
atgcaatgcatactaacgaaaccatgtgagaaatgtgatggcttgagagcaaagggtggctctgacttccttgggttcgatccccaaaacctccggagggttagttacaccagtcggacggtactgtgcactagtgacaggataatagcggacggagatgggtgtgcggaacaagttcgagactcgcggcactgtgacgtgcttaagctggtgaggtgcagcttggggcgttacagatgtgatagagagtcatcaatctctggcaacaacagcagtttcttgagcttaaagaagatgaaagttcgagaggcagagtcaccgttcgatgtggccaatgaaacagaatgcaggaaggcgtgcctagagaataccctatgccaggcttactcgtacggcgttctagctgaagacagagctcaaaggggtactgctactaccagcatttcctcgtgttggatctggttggaagatctaaataatcttgtagaagagtatggcggtggccacaatatctttgttcgatttgcctcgtttgatataggtatgtgctgctgtttataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

186

Amino Acids

20.74

Weight (kDa)

6.15

Isoelectric Point (pI)

49.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019889)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0105791
rosa_multiflora Rmu_sc0001361.1_g000015 Rmu_sc0002776.1_g000036
rosa_roxburghii Rroxscaffold_1G00036870 Rroxscaffold_7G00185670
rosa_samantha Rh5AG012200 Rh5BG015000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 559
AccII CGCG 1 cut(s) 187
AccIII TCCGGA 1 cut(s) 93
AciI CCGC 4 cut(s) 149, 167, 187, 498
AclWI GGATC 2 cut(s) 74, 464
AcoI YGGCCR 2 cut(s) 330, 502
AcuI CTGAAG 1 cut(s) 426
AfaI GTAC 3 cut(s) 123, 392, 427
AfiI CCNNNNNNNGG 3 cut(s) 97, 379, 453
AflII CTTAAG 1 cut(s) 203
AhlI ACTAGT 1 cut(s) 131
AjiI CACGTC 1 cut(s) 199
AjnI CCWGG 1 cut(s) 378
AluBI AGCT 5 cut(s) 208, 222, 285, 404, 416
AluI AGCT 5 cut(s) 208, 222, 285, 404, 416
Alw21I GWGCWC 2 cut(s) 131, 418
Alw26I GTCTC 1 cut(s) 174
Alw44I GTGCAC 1 cut(s) 127
AlwI GGATC 2 cut(s) 74, 464
Aor13HI TCCGGA 1 cut(s) 93
AoxI GGCC 2 cut(s) 330, 502
ApaLI GTGCAC 1 cut(s) 127
ApeKI GCWGC 2 cut(s) 219, 549
Asp700I GAANNNNTTC 1 cut(s) 174
AsuHPI GGTGA 2 cut(s) 223, 309
BaeGI GKGCMC 1 cut(s) 131
BalI TGGCCA 2 cut(s) 332, 504
BanII GRGCYC 1 cut(s) 418
BauI CACGAG 1 cut(s) 448
BbsI GAAGAC 1 cut(s) 414
Bbv12I GWGCWC 2 cut(s) 131, 418
BbvI GCAGC 2 cut(s) 231, 536
BccI CCATC 2 cut(s) 32, 152
BceAI ACGGC 1 cut(s) 409
BciT130I CCWGG 1 cut(s) 380
BcoDI GTCTC 1 cut(s) 174
BcuI ACTAGT 1 cut(s) 131
BfaI CTAG 3 cut(s) 132, 362, 401
BfrI CTTAAG 1 cut(s) 203
BglII AGATCT 1 cut(s) 469
BisI GCNGC 3 cut(s) 188, 220, 550
BlsI GCNGC 3 cut(s) 189, 221, 551
Bme1390I CCNGG 1 cut(s) 380
BmgBI CACGTC 1 cut(s) 199
BmrFI CCNGG 1 cut(s) 380
BpiI GAAGAC 1 cut(s) 414
BpuEI CTTGAG 2 cut(s) 64, 301
BsaJI CCNNGG 1 cut(s) 70
BsaWI WCCGGW 1 cut(s) 93
BsaXI ACNNNNNCTCC 2 cut(s) 88, 118
Bsc4I CCNNNNNNNGG 3 cut(s) 97, 379, 453
Bse1I ACTGG 1 cut(s) 111
Bse3DI GCAATG 1 cut(s) 11
BseAI TCCGGA 1 cut(s) 93
BseBI CCWGG 1 cut(s) 380
BseDI CCNNGG 1 cut(s) 70
BseLI CCNNNNNNNGG 3 cut(s) 97, 379, 453
BseMI GCAATG 1 cut(s) 11
BseNI ACTGG 1 cut(s) 111
BseSI GKGCMC 1 cut(s) 131
BseXI GCAGC 2 cut(s) 231, 536
BsgI GTGCAG 1 cut(s) 238
Bsh1236I CGCG 1 cut(s) 187
BshFI GGCC 2 cut(s) 332, 504
BsiHKAI GWGCWC 2 cut(s) 131, 418
BsiSI CCGG 1 cut(s) 94
BsiWI CGTACG 1 cut(s) 390
BslI CCNNNNNNNGG 3 cut(s) 97, 379, 453
BsmAI GTCTC 1 cut(s) 174
BsmI GAATGC 1 cut(s) 350
BsnI GGCC 2 cut(s) 332, 504
Bsp1286I GDGCHC 2 cut(s) 131, 418
Bsp13I TCCGGA 1 cut(s) 93
Bsp143I GATC 3 cut(s) 79, 456, 469
BspACI CCGC 4 cut(s) 149, 167, 187, 498
BspANI GGCC 2 cut(s) 332, 504
BspEI TCCGGA 1 cut(s) 93
BspFNI CGCG 1 cut(s) 187
BspPI GGATC 2 cut(s) 74, 464
BspTI CTTAAG 1 cut(s) 203
BsrDI GCAATG 1 cut(s) 11
BsrI ACTGG 1 cut(s) 111
BssECI CCNNGG 1 cut(s) 70
BssMI GATC 3 cut(s) 79, 456, 469
BssSI CACGAG 1 cut(s) 448
BssT1I CCWWGG 1 cut(s) 70
Bst2BI CACGAG 1 cut(s) 448
Bst2UI CCWGG 1 cut(s) 380
Bst4CI ACNGT 4 cut(s) 121, 126, 194, 321
Bst6I CTCTTC 1 cut(s) 483
BstAFI CTTAAG 1 cut(s) 203
BstC8I GCNNGC 1 cut(s) 358
BstENI CCTNNNNNAGG 1 cut(s) 377
BstFNI CGCG 1 cut(s) 187
BstKTI GATC 3 cut(s) 82, 459, 472
BstMAI GTCTC 1 cut(s) 174
BstMBI GATC 3 cut(s) 79, 456, 469
BstMWI GCNNNNNNNGC 1 cut(s) 270
BstNI CCWGG 1 cut(s) 380
BstSCI CCNGG 1 cut(s) 378
BstSLI GKGCMC 1 cut(s) 131
BstUI CGCG 1 cut(s) 187
BstV1I GCAGC 2 cut(s) 231, 536
BstV2I GAAGAC 1 cut(s) 414
BstX2I RGATCY 2 cut(s) 456, 469
BstYI RGATCY 2 cut(s) 456, 469
BsuRI GGCC 2 cut(s) 332, 504
BtrI CACGTC 1 cut(s) 199
BtsIMutI CAGTG 1 cut(s) 190
Cac8I GCNNGC 1 cut(s) 358
Csp6I GTAC 3 cut(s) 122, 391, 426
CviAII CATG 1 cut(s) 24
CviQI GTAC 3 cut(s) 122, 391, 426
DpnI GATC 3 cut(s) 81, 458, 471
DpnII GATC 3 cut(s) 79, 456, 469
EaeI YGGCCR 2 cut(s) 330, 502
Eam1104I CTCTTC 1 cut(s) 483
EarI CTCTTC 1 cut(s) 483
Ecl136II GAGCTC 1 cut(s) 416
Eco130I CCWWGG 1 cut(s) 70
Eco24I GRGCYC 1 cut(s) 418
Eco53kI GAGCTC 1 cut(s) 416
Eco57I CTGAAG 1 cut(s) 426
EcoICRI GAGCTC 1 cut(s) 416
EcoNI CCTNNNNNAGG 1 cut(s) 377
EcoRII CCWGG 1 cut(s) 378
EcoT14I CCWWGG 1 cut(s) 70
EcoT22I ATGCAT 1 cut(s) 11
EcoT38I GRGCYC 1 cut(s) 418
ErhI CCWWGG 1 cut(s) 70
FaeI CATG 1 cut(s) 27
FaiI YATR 7 cut(s) 11, 25, 376, 495, 539, 545, 559
FatI CATG 1 cut(s) 23
Fnu4HI GCNGC 3 cut(s) 188, 220, 550
FriOI GRGCYC 1 cut(s) 418
Fsp4HI GCNGC 3 cut(s) 188, 220, 550
FspBI CTAG 3 cut(s) 132, 362, 401
GluI GCNGC 3 cut(s) 188, 220, 550
HaeIII GGCC 2 cut(s) 332, 504
HapII CCGG 1 cut(s) 94
Hin1II CATG 1 cut(s) 27
HinfI GANTC 3 cut(s) 182, 248, 314
HpaII CCGG 1 cut(s) 94
HphI GGTGA 2 cut(s) 223, 309
Hpy166II GTNNAC 1 cut(s) 129
Hpy188I TCNGA 2 cut(s) 64, 117
Hpy188III TCNNGA 4 cut(s) 94, 179, 280, 305
Hpy8I GTNNAC 1 cut(s) 129
HpyAV CCTTC 1 cut(s) 346
HpyCH4III ACNGT 4 cut(s) 121, 126, 194, 321
HpyCH4IV ACGT 1 cut(s) 198
HpyCH4V TGCA 5 cut(s) 4, 9, 129, 219, 348
HpyF10VI GCNNNNNNNGC 1 cut(s) 270
HpySE526I ACGT 1 cut(s) 198
Hsp92II CATG 1 cut(s) 27
Kpn2I TCCGGA 1 cut(s) 93
Kzo9I GATC 3 cut(s) 79, 456, 469
Lsp1109I GCAGC 2 cut(s) 231, 536
MaeI CTAG 3 cut(s) 132, 362, 401
MaeII ACGT 1 cut(s) 198
MaeIII GTNAC 5 cut(s) 104, 134, 194, 230, 315
MalI GATC 3 cut(s) 81, 458, 471
MboI GATC 3 cut(s) 79, 456, 469
MboII GAAGA 4 cut(s) 304, 419, 479, 500
MflI RGATCY 2 cut(s) 456, 469
MhlI GDGCHC 2 cut(s) 131, 418
MlsI TGGCCA 2 cut(s) 332, 504
MluNI TGGCCA 2 cut(s) 332, 504
MlyI GAGTC 3 cut(s) 176, 257, 323
MmeI TCCRAC 3 cut(s) 95, 434, 444
MnlI CCTC 6 cut(s) 90, 101, 207, 301, 457, 538
Mox20I TGGCCA 2 cut(s) 332, 504
Mph1103I ATGCAT 1 cut(s) 11
MroI TCCGGA 1 cut(s) 93
MroXI GAANNNNTTC 1 cut(s) 174
MscI TGGCCA 2 cut(s) 332, 504
MseI TTAA 2 cut(s) 204, 287
Msp20I TGGCCA 2 cut(s) 332, 504
MspCI CTTAAG 1 cut(s) 203
MspI CCGG 1 cut(s) 94
MspR9I CCNGG 1 cut(s) 380
Mva1269I GAATGC 1 cut(s) 350
MvaI CCWGG 1 cut(s) 380
MvnI CGCG 1 cut(s) 187
MwoI GCNNNNNNNGC 1 cut(s) 270
NdeII GATC 3 cut(s) 79, 456, 469
NlaIII CATG 1 cut(s) 27
NmuCI GTSAC 3 cut(s) 134, 194, 315
NsiI ATGCAT 1 cut(s) 11
PctI GAATGC 1 cut(s) 350
PdmI GAANNNNTTC 1 cut(s) 174
Pfl23II CGTACG 1 cut(s) 390
PkrI GCNGC 3 cut(s) 189, 221, 551
PleI GAGTC 3 cut(s) 176, 256, 322
PpsI GAGTC 3 cut(s) 176, 256, 322
PsiI TTATAA 1 cut(s) 559
Psp124BI GAGCTC 1 cut(s) 418
Psp6I CCWGG 1 cut(s) 378
PspGI CCWGG 1 cut(s) 378
PspLI CGTACG 1 cut(s) 390
PsuI RGATCY 2 cut(s) 456, 469
RsaI GTAC 3 cut(s) 123, 392, 427
RsaNI GTAC 3 cut(s) 122, 391, 426
SacI GAGCTC 1 cut(s) 418
SaqAI TTAA 2 cut(s) 204, 287
SatI GCNGC 3 cut(s) 188, 220, 550
Sau3AI GATC 3 cut(s) 79, 456, 469
SchI GAGTC 3 cut(s) 176, 257, 323
ScrFI CCNGG 1 cut(s) 380
SduI GDGCHC 2 cut(s) 131, 418
SetI ASST 9 cut(s) 93, 201, 210, 218, 224, 287, 406, 418, 544
SmlI CTYRAG 3 cut(s) 43, 203, 280
SmoI CTYRAG 3 cut(s) 43, 203, 280
SpeI ACTAGT 1 cut(s) 131
SsiI CCGC 4 cut(s) 149, 167, 187, 498
SspMI CTAG 3 cut(s) 132, 362, 401
SstI GAGCTC 1 cut(s) 418
StyD4I CCNGG 1 cut(s) 378
StyI CCWWGG 1 cut(s) 70
TaaI ACNGT 4 cut(s) 121, 126, 194, 321
TaiI ACGT 1 cut(s) 201
TaqI TCGA 5 cut(s) 78, 178, 304, 324, 520
TauI GCSGC 1 cut(s) 190
Tru1I TTAA 2 cut(s) 204, 287
Tru9I TTAA 2 cut(s) 204, 287
TscAI CASTG 1 cut(s) 197
TseFI GTSAC 3 cut(s) 134, 194, 315
TseI GCWGC 2 cut(s) 219, 549
Tsp45I GTSAC 3 cut(s) 134, 194, 315
TspDTI ATGAA 2 cut(s) 311, 351
TspGWI ACGGA 1 cut(s) 168
TspRI CASTG 1 cut(s) 197
Vha464I CTTAAG 1 cut(s) 203
VneI GTGCAC 1 cut(s) 127
XagI CCTNNNNNAGG 1 cut(s) 377
XmnI GAANNNNTTC 1 cut(s) 174
XspI CTAG 3 cut(s) 132, 362, 401
Zsp2I ATGCAT 1 cut(s) 11
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.