Rh5AG012200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0019889
Physical Location & Seq
Forward (+)
800653 .. 801171
519 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG012200.1

Sequence Viewer

Length: 519 bp
ATGATAGCTACAAGCGTATACACGGTGAAGCAGTGGCAGCGCAGCCACAAGATCACGGCTGACTCAGAAACCTCTGTAAGCAGCGAAACCCCAAATACTCAGCACAGAACCTCTCCATTTCCTCACCTCCTCTCTCCCTACACACCCCCTCCTCCATCTCCGCCACGACGTCGTTCCAGTAGTCCCTCCCAAACCCACCGCCGCACCCACCCCAGAACCCCTCCACGTCTTCCTGAACAATCGCGTCCACGATCTCCTGCAGCCCCACGATCCGACGGCTCACCTTCCTTCTCGCCTCCCTCACTGTGGGGTCCACCCCGGGCACAGAGTCCAATCTCAGTAGCAACTTCATCAGCGCCTCGTTCATCCTCAGCTTCTCCCGCTCGCTGCTCCTCACGGCGTCGACCGTCTCCTGCCGTTGGATCAGGCGCTGGAACTCGTCGGCCTCGGAATGGACGGCCGCGATTGTCTTGTAGAGGCTGCGGATCAGGTGGCTCCGGTAGGCCGATTGGATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

172

Amino Acids

18.41

Weight (kDa)

12.0

Isoelectric Point (pI)

114.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019889)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0105791
rosa_multiflora Rmu_sc0001361.1_g000015 Rmu_sc0002776.1_g000036
rosa_roxburghii Rroxscaffold_1G00036870 Rroxscaffold_7G00185670
rosa_samantha Rh5AG012200 Rh5BG015000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 172
AccBSI CCGCTC 1 cut(s) 383
AccI GTMKAC 2 cut(s) 18, 403
AccII CGCG 2 cut(s) 244, 463
AciI CCGC 6 cut(s) 161, 199, 202, 381, 461, 483
AclWI GGATC 3 cut(s) 264, 430, 493
AcoI YGGCCR 1 cut(s) 458
AcyI GRCGYC 2 cut(s) 169, 400
AfiI CCNNNNNNNGG 3 cut(s) 306, 419, 452
AjiI CACGTC 1 cut(s) 227
AluBI AGCT 2 cut(s) 8, 374
AluI AGCT 2 cut(s) 8, 374
Alw26I GTCTC 1 cut(s) 414
AlwI GGATC 3 cut(s) 264, 430, 493
AlwNI CAGNNNCTG 1 cut(s) 431
Ama87I CYCGRG 1 cut(s) 318
AoxI GGCC 3 cut(s) 443, 458, 503
ApeKI GCWGC 6 cut(s) 37, 42, 81, 260, 387, 480
AspLEI GCGC 3 cut(s) 42, 358, 431
AspS9I GGNCC 1 cut(s) 311
AsuC2I CCSGG 2 cut(s) 319, 320
AsuHPI GGTGA 3 cut(s) 37, 116, 273
AvaI CYCGRG 1 cut(s) 318
AvaII GGWCC 1 cut(s) 311
BaeGI GKGCMC 1 cut(s) 325
BbsI GAAGAC 1 cut(s) 221
BbvCI CCTCAGC 1 cut(s) 370
BbvI GCAGC 6 cut(s) 49, 54, 93, 272, 374, 467
BccI CCATC 1 cut(s) 163
BceAI ACGGC 5 cut(s) 72, 292, 401, 413, 473
BcnI CCSGG 2 cut(s) 319, 320
BcoDI GTCTC 1 cut(s) 414
BfmI CTRYAG 1 cut(s) 258
BfoI RGCGCY 2 cut(s) 359, 432
BisI GCNGC 8 cut(s) 38, 43, 82, 202, 261, 388, 461, 481
BlsI GCNGC 8 cut(s) 39, 44, 83, 203, 262, 389, 462, 482
Bme1390I CCNGG 2 cut(s) 319, 320
Bme18I GGWCC 1 cut(s) 311
BmeT110I CYCGRG 1 cut(s) 318
BmgBI CACGTC 1 cut(s) 227
BmgT120I GGNCC 1 cut(s) 311
BmiI GGNNCC 2 cut(s) 312, 496
BmrFI CCNGG 2 cut(s) 319, 320
BpiI GAAGAC 1 cut(s) 221
Bpu10I CCTNAGC 1 cut(s) 370
BpuMI CCSGG 2 cut(s) 319, 320
BsaHI GRCGYC 2 cut(s) 169, 400
BsaJI CCNNGG 3 cut(s) 317, 318, 446
BsaWI WCCGGW 1 cut(s) 497
BsaXI ACNNNNNCTCC 2 cut(s) 133, 163
Bsc4I CCNNNNNNNGG 3 cut(s) 306, 419, 452
Bse1I ACTGG 1 cut(s) 177
BseDI CCNNGG 3 cut(s) 317, 318, 446
BseGI GGATG 1 cut(s) 365
BseLI CCNNNNNNNGG 3 cut(s) 306, 419, 452
BseMII CTCAG 4 cut(s) 78, 113, 351, 384
BseNI ACTGG 1 cut(s) 177
BseRI GAGGAG 3 cut(s) 119, 141, 382
BseSI GKGCMC 1 cut(s) 325
BseX3I CGGCCG 1 cut(s) 458
BseXI GCAGC 6 cut(s) 49, 54, 93, 272, 374, 467
Bsh1236I CGCG 2 cut(s) 244, 463
Bsh1285I CGRYCG 2 cut(s) 407, 461
BshFI GGCC 3 cut(s) 445, 460, 505
BsiEI CGRYCG 2 cut(s) 407, 461
BsiHKCI CYCGRG 1 cut(s) 318
BsiSI CCGG 2 cut(s) 319, 498
BslFI GGGAC 1 cut(s) 168
BslI CCNNNNNNNGG 3 cut(s) 306, 419, 452
BsmAI GTCTC 1 cut(s) 414
BsmBI CGTCTC 1 cut(s) 414
BsmFI GGGAC 1 cut(s) 168
BsnI GGCC 3 cut(s) 445, 460, 505
BsoBI CYCGRG 1 cut(s) 318
Bsp1286I GDGCHC 1 cut(s) 325
Bsp143I GATC 5 cut(s) 51, 251, 269, 422, 485
BspACI CCGC 6 cut(s) 161, 199, 202, 381, 461, 483
BspANI GGCC 3 cut(s) 445, 460, 505
BspCNI CTCAG 4 cut(s) 77, 112, 350, 383
BspFNI CGCG 2 cut(s) 244, 463
BspLI GGNNCC 2 cut(s) 312, 496
BspMAI CTGCAG 1 cut(s) 262
BspPI GGATC 3 cut(s) 264, 430, 493
BsrBI CCGCTC 1 cut(s) 383
BsrI ACTGG 1 cut(s) 177
BssECI CCNNGG 3 cut(s) 317, 318, 446
BssMI GATC 5 cut(s) 51, 251, 269, 422, 485
BssNAI GTATAC 1 cut(s) 19
BssNI GRCGYC 2 cut(s) 169, 400
Bst1107I GTATAC 1 cut(s) 19
Bst4CI ACNGT 3 cut(s) 25, 306, 408
BstACI GRCGYC 2 cut(s) 169, 400
BstC8I GCNNGC 1 cut(s) 385
BstDEI CTNAG 4 cut(s) 64, 99, 337, 370
BstF5I GGATG 1 cut(s) 365
BstFNI CGCG 2 cut(s) 244, 463
BstH2I RGCGCY 2 cut(s) 359, 432
BstHHI GCGC 3 cut(s) 42, 358, 431
BstKTI GATC 5 cut(s) 54, 254, 272, 425, 488
BstMAI GTCTC 1 cut(s) 414
BstMBI GATC 5 cut(s) 51, 251, 269, 422, 485
BstMCI CGRYCG 2 cut(s) 407, 461
BstMWI GCNNNNNNNGC 2 cut(s) 37, 380
BstSCI CCNGG 2 cut(s) 317, 318
BstSFI CTRYAG 1 cut(s) 258
BstSLI GKGCMC 1 cut(s) 325
BstUI CGCG 2 cut(s) 244, 463
BstV1I GCAGC 6 cut(s) 49, 54, 93, 272, 374, 467
BstV2I GAAGAC 1 cut(s) 221
BstZ17I GTATAC 1 cut(s) 19
BstZI CGGCCG 1 cut(s) 458
BsuRI GGCC 3 cut(s) 445, 460, 505
BtrI CACGTC 1 cut(s) 227
BtsCI GGATG 1 cut(s) 365
BtsI GCAGTG 1 cut(s) 38
BtsIMutI CAGTG 2 cut(s) 38, 302
Cac8I GCNNGC 1 cut(s) 385
CaiI CAGNNNCTG 1 cut(s) 431
CfoI GCGC 3 cut(s) 42, 358, 431
Cfr13I GGNCC 1 cut(s) 311
Cfr9I CCCGGG 1 cut(s) 318
CseI GACGC 2 cut(s) 233, 389
DdeI CTNAG 4 cut(s) 64, 99, 337, 370
DpnI GATC 5 cut(s) 53, 253, 271, 424, 487
DpnII GATC 5 cut(s) 51, 251, 269, 422, 485
EaeI YGGCCR 1 cut(s) 458
EagI CGGCCG 1 cut(s) 458
EciI GGCGGA 1 cut(s) 150
EclXI CGGCCG 1 cut(s) 458
Eco47I GGWCC 1 cut(s) 311
Eco52I CGGCCG 1 cut(s) 458
Eco88I CYCGRG 1 cut(s) 318
Esp3I CGTCTC 1 cut(s) 414
FaiI YATR 1 cut(s) 19
FaqI GGGAC 1 cut(s) 168
FauI CCCGC 1 cut(s) 388
FblI GTMKAC 2 cut(s) 18, 403
Fnu4HI GCNGC 8 cut(s) 38, 43, 82, 202, 261, 388, 461, 481
FokI GGATG 1 cut(s) 352
Fsp4HI GCNGC 8 cut(s) 38, 43, 82, 202, 261, 388, 461, 481
GlaI GCGC 3 cut(s) 41, 357, 430
GluI GCNGC 8 cut(s) 38, 43, 82, 202, 261, 388, 461, 481
HaeII RGCGCY 2 cut(s) 359, 432
HaeIII GGCC 3 cut(s) 445, 460, 505
HapII CCGG 2 cut(s) 319, 498
HgaI GACGC 2 cut(s) 233, 389
HhaI GCGC 3 cut(s) 42, 358, 431
Hin1I GRCGYC 2 cut(s) 169, 400
Hin6I GCGC 3 cut(s) 40, 356, 429
HinP1I GCGC 3 cut(s) 40, 356, 429
HincII GTYRAC 1 cut(s) 404
HindII GTYRAC 1 cut(s) 404
HinfI GANTC 2 cut(s) 62, 328
HpaII CCGG 2 cut(s) 319, 498
HphI GGTGA 3 cut(s) 37, 116, 273
Hpy166II GTNNAC 4 cut(s) 19, 248, 314, 404
Hpy188I TCNGA 3 cut(s) 67, 274, 450
Hpy188III TCNNGA 1 cut(s) 233
Hpy8I GTNNAC 4 cut(s) 19, 248, 314, 404
Hpy99I CGWCG 5 cut(s) 171, 174, 278, 405, 444
HpyAV CCTTC 2 cut(s) 294, 298
HpyCH4III ACNGT 3 cut(s) 25, 306, 408
HpyCH4IV ACGT 2 cut(s) 169, 226
HpyCH4V TGCA 1 cut(s) 260
HpyF10VI GCNNNNNNNGC 2 cut(s) 37, 380
HpyF3I CTNAG 4 cut(s) 64, 99, 337, 370
HpySE526I ACGT 2 cut(s) 169, 226
Hsp92I GRCGYC 2 cut(s) 169, 400
HspAI GCGC 3 cut(s) 40, 356, 429
Kzo9I GATC 5 cut(s) 51, 251, 269, 422, 485
LmnI GCTCC 2 cut(s) 395, 500
Lsp1109I GCAGC 6 cut(s) 49, 54, 93, 272, 374, 467
MaeII ACGT 2 cut(s) 169, 226
MalI GATC 5 cut(s) 53, 253, 271, 424, 487
MbiI CCGCTC 1 cut(s) 383
MboI GATC 5 cut(s) 51, 251, 269, 422, 485
MboII GAAGA 1 cut(s) 221
MhlI GDGCHC 1 cut(s) 325
MlyI GAGTC 2 cut(s) 56, 337
MmeI TCCRAC 2 cut(s) 297, 400
MspI CCGG 2 cut(s) 319, 498
MspR9I CCNGG 2 cut(s) 319, 320
MvnI CGCG 2 cut(s) 244, 463
MwoI GCNNNNNNNGC 2 cut(s) 37, 380
NciI CCSGG 2 cut(s) 319, 320
NdeII GATC 5 cut(s) 51, 251, 269, 422, 485
NlaIV GGNNCC 2 cut(s) 312, 496
PkrI GCNGC 8 cut(s) 39, 44, 83, 203, 262, 389, 462, 482
PleI GAGTC 2 cut(s) 56, 336
PpsI GAGTC 2 cut(s) 56, 336
PspN4I GGNNCC 2 cut(s) 312, 496
PspPI GGNCC 1 cut(s) 311
PstI CTGCAG 1 cut(s) 262
PstNI CAGNNNCTG 1 cut(s) 431
SalI GTCGAC 1 cut(s) 402
SatI GCNGC 8 cut(s) 38, 43, 82, 202, 261, 388, 461, 481
Sau3AI GATC 5 cut(s) 51, 251, 269, 422, 485
Sau96I GGNCC 1 cut(s) 311
SchI GAGTC 2 cut(s) 56, 337
ScrFI CCNGG 2 cut(s) 319, 320
SduI GDGCHC 1 cut(s) 325
SetI ASST 9 cut(s) 10, 74, 113, 129, 172, 229, 286, 376, 493
SfcI CTRYAG 1 cut(s) 258
SinI GGWCC 1 cut(s) 311
SmaI CCCGGG 1 cut(s) 320
SsiI CCGC 6 cut(s) 161, 199, 202, 381, 461, 483
StyD4I CCNGG 2 cut(s) 317, 318
TaaI ACNGT 3 cut(s) 25, 306, 408
TaiI ACGT 2 cut(s) 172, 229
TaqI TCGA 1 cut(s) 403
TauI GCSGC 2 cut(s) 204, 463
TscAI CASTG 2 cut(s) 38, 309
TseI GCWGC 6 cut(s) 37, 42, 81, 260, 387, 480
TspDTI ATGAA 2 cut(s) 339, 354
TspMI CCCGGG 1 cut(s) 318
TspRI CASTG 2 cut(s) 38, 309
VpaK11BI GGWCC 1 cut(s) 311
XmaI CCCGGG 1 cut(s) 318
XmiI GTMKAC 2 cut(s) 18, 403
ZraI GACGTC 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.