Rmu_sc0001361.1_g000015

PAN-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001361.1
OG0019889
Physical Location & Seq
Reverse (-)
54318 .. 55549
1232 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 561 bp
atgcaatgcatactaacgaaaccatgtgagaaatgtgatggcttgagagcaaagggtggctctgacttccttgggttcgatccccaaaacctccggagggttagttacaccagtcggacggtactgtgcactagtgacaggataatagcggacggagatgggtgtgcggaacaagttcgagactcgcggcactgtgacgtgcttaagctggtgaggtgcagcttggggcgttacagatgtgatagagagtcatcaatctctggcaacaacagcagtttcttgagcttaaagaagatgaaagttcgagaggcagagtcaccgttcgatgtggccaatgaaacagaatgcaggaaggcgtgcctagagaataccctatgccaggcttactcgtacggcgttctagctgaagacagagctcaaaggggtactgctactaccagcatttcctcgtgttggatctggttggaagatctaaataatcttgtagaagagtatggcggtggccacaatatctttgttcgatttgcctcgtttgatataggtatgtgctgctgtttataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

186

Amino Acids

20.74

Weight (kDa)

6.15

Isoelectric Point (pI)

49.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAN_2 PF08276 89 - 160 1.3e-09 PAN-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019889)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0105791
rosa_multiflora Rmu_sc0001361.1_g000015 Rmu_sc0002776.1_g000036
rosa_roxburghii Rroxscaffold_1G00036870 Rroxscaffold_7G00185670
rosa_samantha Rh5AG012200 Rh5BG015000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 559
AccII CGCG 1 cut(s) 187
AccIII TCCGGA 1 cut(s) 93
AciI CCGC 4 cut(s) 149, 167, 187, 498
AclWI GGATC 2 cut(s) 74, 464
AcoI YGGCCR 2 cut(s) 330, 502
AcuI CTGAAG 1 cut(s) 426
AfaI GTAC 3 cut(s) 123, 392, 427
AfiI CCNNNNNNNGG 3 cut(s) 97, 379, 453
AflII CTTAAG 1 cut(s) 203
AhlI ACTAGT 1 cut(s) 131
AjiI CACGTC 1 cut(s) 199
AjnI CCWGG 1 cut(s) 378
AluBI AGCT 5 cut(s) 208, 222, 285, 404, 416
AluI AGCT 5 cut(s) 208, 222, 285, 404, 416
Alw21I GWGCWC 2 cut(s) 131, 418
Alw26I GTCTC 1 cut(s) 174
Alw44I GTGCAC 1 cut(s) 127
AlwI GGATC 2 cut(s) 74, 464
Aor13HI TCCGGA 1 cut(s) 93
AoxI GGCC 2 cut(s) 330, 502
ApaLI GTGCAC 1 cut(s) 127
ApeKI GCWGC 2 cut(s) 219, 549
Asp700I GAANNNNTTC 1 cut(s) 174
AsuHPI GGTGA 2 cut(s) 223, 309
BaeGI GKGCMC 1 cut(s) 131
BalI TGGCCA 2 cut(s) 332, 504
BanII GRGCYC 1 cut(s) 418
BauI CACGAG 1 cut(s) 448
BbsI GAAGAC 1 cut(s) 414
Bbv12I GWGCWC 2 cut(s) 131, 418
BbvI GCAGC 2 cut(s) 231, 536
BccI CCATC 2 cut(s) 32, 152
BceAI ACGGC 1 cut(s) 409
BciT130I CCWGG 1 cut(s) 380
BcoDI GTCTC 1 cut(s) 174
BcuI ACTAGT 1 cut(s) 131
BfaI CTAG 3 cut(s) 132, 362, 401
BfrI CTTAAG 1 cut(s) 203
BglII AGATCT 1 cut(s) 469
BisI GCNGC 3 cut(s) 188, 220, 550
BlsI GCNGC 3 cut(s) 189, 221, 551
Bme1390I CCNGG 1 cut(s) 380
BmgBI CACGTC 1 cut(s) 199
BmrFI CCNGG 1 cut(s) 380
BpiI GAAGAC 1 cut(s) 414
BpuEI CTTGAG 2 cut(s) 64, 301
BsaJI CCNNGG 1 cut(s) 70
BsaWI WCCGGW 1 cut(s) 93
BsaXI ACNNNNNCTCC 2 cut(s) 88, 118
Bsc4I CCNNNNNNNGG 3 cut(s) 97, 379, 453
Bse1I ACTGG 1 cut(s) 111
Bse3DI GCAATG 1 cut(s) 11
BseAI TCCGGA 1 cut(s) 93
BseBI CCWGG 1 cut(s) 380
BseDI CCNNGG 1 cut(s) 70
BseLI CCNNNNNNNGG 3 cut(s) 97, 379, 453
BseMI GCAATG 1 cut(s) 11
BseNI ACTGG 1 cut(s) 111
BseSI GKGCMC 1 cut(s) 131
BseXI GCAGC 2 cut(s) 231, 536
BsgI GTGCAG 1 cut(s) 238
Bsh1236I CGCG 1 cut(s) 187
BshFI GGCC 2 cut(s) 332, 504
BsiHKAI GWGCWC 2 cut(s) 131, 418
BsiSI CCGG 1 cut(s) 94
BsiWI CGTACG 1 cut(s) 390
BslI CCNNNNNNNGG 3 cut(s) 97, 379, 453
BsmAI GTCTC 1 cut(s) 174
BsmI GAATGC 1 cut(s) 350
BsnI GGCC 2 cut(s) 332, 504
Bsp1286I GDGCHC 2 cut(s) 131, 418
Bsp13I TCCGGA 1 cut(s) 93
Bsp143I GATC 3 cut(s) 79, 456, 469
BspACI CCGC 4 cut(s) 149, 167, 187, 498
BspANI GGCC 2 cut(s) 332, 504
BspEI TCCGGA 1 cut(s) 93
BspFNI CGCG 1 cut(s) 187
BspPI GGATC 2 cut(s) 74, 464
BspTI CTTAAG 1 cut(s) 203
BsrDI GCAATG 1 cut(s) 11
BsrI ACTGG 1 cut(s) 111
BssECI CCNNGG 1 cut(s) 70
BssMI GATC 3 cut(s) 79, 456, 469
BssSI CACGAG 1 cut(s) 448
BssT1I CCWWGG 1 cut(s) 70
Bst2BI CACGAG 1 cut(s) 448
Bst2UI CCWGG 1 cut(s) 380
Bst4CI ACNGT 4 cut(s) 121, 126, 194, 321
Bst6I CTCTTC 1 cut(s) 483
BstAFI CTTAAG 1 cut(s) 203
BstC8I GCNNGC 1 cut(s) 358
BstENI CCTNNNNNAGG 1 cut(s) 377
BstFNI CGCG 1 cut(s) 187
BstKTI GATC 3 cut(s) 82, 459, 472
BstMAI GTCTC 1 cut(s) 174
BstMBI GATC 3 cut(s) 79, 456, 469
BstMWI GCNNNNNNNGC 1 cut(s) 270
BstNI CCWGG 1 cut(s) 380
BstSCI CCNGG 1 cut(s) 378
BstSLI GKGCMC 1 cut(s) 131
BstUI CGCG 1 cut(s) 187
BstV1I GCAGC 2 cut(s) 231, 536
BstV2I GAAGAC 1 cut(s) 414
BstX2I RGATCY 2 cut(s) 456, 469
BstYI RGATCY 2 cut(s) 456, 469
BsuRI GGCC 2 cut(s) 332, 504
BtrI CACGTC 1 cut(s) 199
BtsIMutI CAGTG 1 cut(s) 190
Cac8I GCNNGC 1 cut(s) 358
Csp6I GTAC 3 cut(s) 122, 391, 426
CviAII CATG 1 cut(s) 24
CviQI GTAC 3 cut(s) 122, 391, 426
DpnI GATC 3 cut(s) 81, 458, 471
DpnII GATC 3 cut(s) 79, 456, 469
EaeI YGGCCR 2 cut(s) 330, 502
Eam1104I CTCTTC 1 cut(s) 483
EarI CTCTTC 1 cut(s) 483
Ecl136II GAGCTC 1 cut(s) 416
Eco130I CCWWGG 1 cut(s) 70
Eco24I GRGCYC 1 cut(s) 418
Eco53kI GAGCTC 1 cut(s) 416
Eco57I CTGAAG 1 cut(s) 426
EcoICRI GAGCTC 1 cut(s) 416
EcoNI CCTNNNNNAGG 1 cut(s) 377
EcoRII CCWGG 1 cut(s) 378
EcoT14I CCWWGG 1 cut(s) 70
EcoT22I ATGCAT 1 cut(s) 11
EcoT38I GRGCYC 1 cut(s) 418
ErhI CCWWGG 1 cut(s) 70
FaeI CATG 1 cut(s) 27
FaiI YATR 7 cut(s) 11, 25, 376, 495, 539, 545, 559
FatI CATG 1 cut(s) 23
Fnu4HI GCNGC 3 cut(s) 188, 220, 550
FriOI GRGCYC 1 cut(s) 418
Fsp4HI GCNGC 3 cut(s) 188, 220, 550
FspBI CTAG 3 cut(s) 132, 362, 401
GluI GCNGC 3 cut(s) 188, 220, 550
HaeIII GGCC 2 cut(s) 332, 504
HapII CCGG 1 cut(s) 94
Hin1II CATG 1 cut(s) 27
HinfI GANTC 3 cut(s) 182, 248, 314
HpaII CCGG 1 cut(s) 94
HphI GGTGA 2 cut(s) 223, 309
Hpy166II GTNNAC 1 cut(s) 129
Hpy188I TCNGA 2 cut(s) 64, 117
Hpy188III TCNNGA 4 cut(s) 94, 179, 280, 305
Hpy8I GTNNAC 1 cut(s) 129
HpyAV CCTTC 1 cut(s) 346
HpyCH4III ACNGT 4 cut(s) 121, 126, 194, 321
HpyCH4IV ACGT 1 cut(s) 198
HpyCH4V TGCA 5 cut(s) 4, 9, 129, 219, 348
HpyF10VI GCNNNNNNNGC 1 cut(s) 270
HpySE526I ACGT 1 cut(s) 198
Hsp92II CATG 1 cut(s) 27
Kpn2I TCCGGA 1 cut(s) 93
Kzo9I GATC 3 cut(s) 79, 456, 469
Lsp1109I GCAGC 2 cut(s) 231, 536
MaeI CTAG 3 cut(s) 132, 362, 401
MaeII ACGT 1 cut(s) 198
MaeIII GTNAC 5 cut(s) 104, 134, 194, 230, 315
MalI GATC 3 cut(s) 81, 458, 471
MboI GATC 3 cut(s) 79, 456, 469
MboII GAAGA 4 cut(s) 304, 419, 479, 500
MflI RGATCY 2 cut(s) 456, 469
MhlI GDGCHC 2 cut(s) 131, 418
MlsI TGGCCA 2 cut(s) 332, 504
MluNI TGGCCA 2 cut(s) 332, 504
MlyI GAGTC 3 cut(s) 176, 257, 323
MmeI TCCRAC 3 cut(s) 95, 434, 444
MnlI CCTC 6 cut(s) 90, 101, 207, 301, 457, 538
Mox20I TGGCCA 2 cut(s) 332, 504
Mph1103I ATGCAT 1 cut(s) 11
MroI TCCGGA 1 cut(s) 93
MroXI GAANNNNTTC 1 cut(s) 174
MscI TGGCCA 2 cut(s) 332, 504
MseI TTAA 2 cut(s) 204, 287
Msp20I TGGCCA 2 cut(s) 332, 504
MspCI CTTAAG 1 cut(s) 203
MspI CCGG 1 cut(s) 94
MspR9I CCNGG 1 cut(s) 380
Mva1269I GAATGC 1 cut(s) 350
MvaI CCWGG 1 cut(s) 380
MvnI CGCG 1 cut(s) 187
MwoI GCNNNNNNNGC 1 cut(s) 270
NdeII GATC 3 cut(s) 79, 456, 469
NlaIII CATG 1 cut(s) 27
NmuCI GTSAC 3 cut(s) 134, 194, 315
NsiI ATGCAT 1 cut(s) 11
PctI GAATGC 1 cut(s) 350
PdmI GAANNNNTTC 1 cut(s) 174
Pfl23II CGTACG 1 cut(s) 390
PkrI GCNGC 3 cut(s) 189, 221, 551
PleI GAGTC 3 cut(s) 176, 256, 322
PpsI GAGTC 3 cut(s) 176, 256, 322
PsiI TTATAA 1 cut(s) 559
Psp124BI GAGCTC 1 cut(s) 418
Psp6I CCWGG 1 cut(s) 378
PspGI CCWGG 1 cut(s) 378
PspLI CGTACG 1 cut(s) 390
PsuI RGATCY 2 cut(s) 456, 469
RsaI GTAC 3 cut(s) 123, 392, 427
RsaNI GTAC 3 cut(s) 122, 391, 426
SacI GAGCTC 1 cut(s) 418
SaqAI TTAA 2 cut(s) 204, 287
SatI GCNGC 3 cut(s) 188, 220, 550
Sau3AI GATC 3 cut(s) 79, 456, 469
SchI GAGTC 3 cut(s) 176, 257, 323
ScrFI CCNGG 1 cut(s) 380
SduI GDGCHC 2 cut(s) 131, 418
SetI ASST 9 cut(s) 93, 201, 210, 218, 224, 287, 406, 418, 544
SmlI CTYRAG 3 cut(s) 43, 203, 280
SmoI CTYRAG 3 cut(s) 43, 203, 280
SpeI ACTAGT 1 cut(s) 131
SsiI CCGC 4 cut(s) 149, 167, 187, 498
SspMI CTAG 3 cut(s) 132, 362, 401
SstI GAGCTC 1 cut(s) 418
StyD4I CCNGG 1 cut(s) 378
StyI CCWWGG 1 cut(s) 70
TaaI ACNGT 4 cut(s) 121, 126, 194, 321
TaiI ACGT 1 cut(s) 201
TaqI TCGA 5 cut(s) 78, 178, 304, 324, 520
TauI GCSGC 1 cut(s) 190
Tru1I TTAA 2 cut(s) 204, 287
Tru9I TTAA 2 cut(s) 204, 287
TscAI CASTG 1 cut(s) 197
TseFI GTSAC 3 cut(s) 134, 194, 315
TseI GCWGC 2 cut(s) 219, 549
Tsp45I GTSAC 3 cut(s) 134, 194, 315
TspDTI ATGAA 2 cut(s) 311, 351
TspGWI ACGGA 1 cut(s) 168
TspRI CASTG 1 cut(s) 197
Vha464I CTTAAG 1 cut(s) 203
VneI GTGCAC 1 cut(s) 127
XagI CCTNNNNNAGG 1 cut(s) 377
XmnI GAANNNNTTC 1 cut(s) 174
XspI CTAG 3 cut(s) 132, 362, 401
Zsp2I ATGCAT 1 cut(s) 11
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.