Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001400.1

Orthogroup ID

OG0022972

Physical Location & Seq

Genomic Coordinates Forward (+)

10129 .. 10809

Gene Structure 681 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001400.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

atgctggatgaaggccttgtccaactacaagaaactctacttactgatattctagaggacaaaagcttgagagtgaccaatgttgaggaaggaattaatgcaactaatagaagagaagttgagtcagaagagagttctcttagtgagttagttctcgatgatgtgaatcagctcaatcaattagacaaattagctcaaacgtccacttggtttggttcaggaagtaaaattatcatcacacatctgctaaatgctcatcaagttgaaaccatgtacaaggtcgaggaattaaatcacgatgaagctcttgaactctttagttggcatgccttcagaggacagccttttggtgattatgcagaactggcagtgaatgcaatagagtatgcttatggtcttccattacttttggcaattttagctagtcatctacgtggtagaagtatagatgaatggaaagagactttgcattccaaaagagcccattacattgagtttgaacatgtgcttagactaagctatgatgcattgaacgatactgtgaaaatagccttccttaacattgcatgtttctgtttggctccaaaatcagttggcgtgcaaactgtctcttttgctgatatgattgcgcaggcgtgccagcaccatggggtgcagtcgtcggagaatcccttgacctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

NB-ARC TIR

Protein Analysis

226

Amino Acids

25.44

Weight (kDa)

4.8

Isoelectric Point (pI)

45.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022972)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000029108
rosa_multiflora	Rmu_sc0001400.1_g000003
rosa_roxburghii	Rroxscaffold_4G00312560
rosa_wichuraiana	Rw1G014080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	630
AcuI	CTGAAG	1 cut(s)	316
AfaI	GTAC	1 cut(s)	275
AflIII	ACRYGT	1 cut(s)	502
AgsI	TTSAA	4 cut(s)	266, 311, 500, 532
AluBI	AGCT	6 cut(s)	66, 172, 194, 305, 422, 519
AluI	AGCT	6 cut(s)	66, 172, 194, 305, 422, 519
Alw26I	GTCTC	2 cut(s)	455, 613
AoxI	GGCC	1 cut(s)	13
AseI	ATTAAT	1 cut(s)	96
AspLEI	GCGC	1 cut(s)	631
AsuHPI	GGTGA	1 cut(s)	362
BanII	GRGCYC	1 cut(s)	484
BbsI	GAAGAC	1 cut(s)	389
BcoDI	GTCTC	2 cut(s)	455, 613
BfaI	CTAG	2 cut(s)	53, 423
BmiI	GGNNCC	1 cut(s)	582
BmsI	GCATC	1 cut(s)	514
BpiI	GAAGAC	1 cut(s)	389
BpuEI	CTTGAG	1 cut(s)	88
BsaAI	YACGTR	1 cut(s)	434
BsaBI	GATNNNNATC	1 cut(s)	165
BsaJI	CCNNGG	1 cut(s)	646
Bse1I	ACTGG	1 cut(s)	369
Bse3DI	GCAATG	1 cut(s)	561
Bse8I	GATNNNNATC	1 cut(s)	165
BseDI	CCNNGG	1 cut(s)	646
BseGI	GGATG	1 cut(s)	13
BseJI	GATNNNNATC	1 cut(s)	165
BseMI	GCAATG	1 cut(s)	561
BseNI	ACTGG	1 cut(s)	369
BsgI	GTGCAG	1 cut(s)	674
BshFI	GGCC	1 cut(s)	15
BsmAI	GTCTC	2 cut(s)	455, 613
BsmI	GAATGC	2 cut(s)	379, 469
BsnI	GGCC	1 cut(s)	15
Bsp1286I	GDGCHC	1 cut(s)	484
Bsp1407I	TGTACA	1 cut(s)	273
Bsp19I	CCATGG	1 cut(s)	646
BspANI	GGCC	1 cut(s)	15
BspLI	GGNNCC	1 cut(s)	582
BsrDI	GCAATG	1 cut(s)	561
BsrGI	TGTACA	1 cut(s)	273
BsrI	ACTGG	1 cut(s)	369
BssECI	CCNNGG	1 cut(s)	646
BssT1I	CCWWGG	1 cut(s)	646
Bst4CI	ACNGT	2 cut(s)	541, 607
Bst6I	CTCTTC	2 cut(s)	106, 123
BstAPI	GCANNNNNTGC	1 cut(s)	374
BstAUI	TGTACA	1 cut(s)	273
BstBAI	YACGTR	1 cut(s)	434
BstC8I	GCNNGC	5 cut(s)	327, 599, 633, 637, 641
BstDEI	CTNAG	3 cut(s)	140, 509, 515
BstDSI	CCRYGG	1 cut(s)	646
BstF5I	GGATG	1 cut(s)	13
BstHHI	GCGC	1 cut(s)	631
BstMAI	GTCTC	2 cut(s)	455, 613
BstMWI	GCNNNNNNNGC	3 cut(s)	365, 374, 419
BstNSI	RCATGY	3 cut(s)	329, 506, 570
BstV2I	GAAGAC	1 cut(s)	389
BstXI	CCANNNNNNTGG	1 cut(s)	647
BsuRI	GGCC	1 cut(s)	15
BtgI	CCRYGG	1 cut(s)	646
BtsCI	GGATG	1 cut(s)	13
BtsI	GCAGTG	1 cut(s)	375
BtsIMutI	CAGTG	1 cut(s)	375
Cac8I	GCNNGC	5 cut(s)	327, 599, 633, 637, 641
CfoI	GCGC	1 cut(s)	631
Csp6I	GTAC	1 cut(s)	274
CspCI	CAANNNNNGTGG	2 cut(s)	193, 228
CviAII	CATG	5 cut(s)	271, 326, 503, 567, 647
CviQI	GTAC	1 cut(s)	274
DdeI	CTNAG	3 cut(s)	140, 509, 515
Eam1104I	CTCTTC	2 cut(s)	106, 123
EarI	CTCTTC	2 cut(s)	106, 123
Eco130I	CCWWGG	1 cut(s)	646
Eco147I	AGGCCT	1 cut(s)	15
Eco24I	GRGCYC	1 cut(s)	484
Eco57I	CTGAAG	1 cut(s)	316
EcoT14I	CCWWGG	1 cut(s)	646
EcoT22I	ATGCAT	1 cut(s)	529
EcoT38I	GRGCYC	1 cut(s)	484
ErhI	CCWWGG	1 cut(s)	646
FaeI	CATG	5 cut(s)	274, 329, 506, 570, 650
FatI	CATG	5 cut(s)	270, 325, 502, 566, 646
FokI	GGATG	1 cut(s)	20
FriOI	GRGCYC	1 cut(s)	484
FspBI	CTAG	2 cut(s)	53, 423
FspI	TGCGCA	1 cut(s)	630
GlaI	GCGC	1 cut(s)	630
HaeIII	GGCC	1 cut(s)	15
HhaI	GCGC	1 cut(s)	631
Hin1II	CATG	5 cut(s)	274, 329, 506, 570, 650
Hin6I	GCGC	1 cut(s)	629
HinP1I	GCGC	1 cut(s)	629
HindIII	AAGCTT	1 cut(s)	64
HinfI	GANTC	3 cut(s)	122, 166, 667
HphI	GGTGA	1 cut(s)	362
Hpy166II	GTNNAC	1 cut(s)	204
Hpy188I	TCNGA	3 cut(s)	127, 335, 664
Hpy188III	TCNNGA	5 cut(s)	53, 155, 219, 296, 308
Hpy8I	GTNNAC	1 cut(s)	204
Hpy99I	CGWCG	1 cut(s)	664
HpyAV	CCTTC	4 cut(s)	5, 83, 340, 562
HpyCH4III	ACNGT	2 cut(s)	541, 607
HpyCH4IV	ACGT	2 cut(s)	200, 433
HpyCH4V	TGCA	8 cut(s)	101, 359, 377, 469, 527, 566, 601, 655
HpyF10VI	GCNNNNNNNGC	3 cut(s)	365, 374, 419
HpyF3I	CTNAG	3 cut(s)	140, 509, 515
HpySE526I	ACGT	2 cut(s)	200, 433
Hsp92II	CATG	5 cut(s)	274, 329, 506, 570, 650
HspAI	GCGC	1 cut(s)	629
LmnI	GCTCC	1 cut(s)	586
LpnPI	CCDG	4 cut(s)	204, 350, 617, 653
LweI	GCATC	1 cut(s)	514
MaeI	CTAG	2 cut(s)	53, 423
MaeII	ACGT	2 cut(s)	200, 433
MaeIII	GTNAC	1 cut(s)	73
MboII	GAAGA	3 cut(s)	123, 140, 389
MhlI	GDGCHC	1 cut(s)	484
MluCI	AATT	6 cut(s)	93, 179, 188, 228, 287, 414
MlyI	GAGTC	1 cut(s)	131
MmeI	TCCRAC	2 cut(s)	46, 642
MnlI	CCTC	4 cut(s)	49, 79, 277, 329
Mph1103I	ATGCAT	1 cut(s)	529
MseI	TTAA	3 cut(s)	96, 290, 558
MslI	CAYNNNNRTG	1 cut(s)	432
Mva1269I	GAATGC	2 cut(s)	379, 469
MwoI	GCNNNNNNNGC	3 cut(s)	365, 374, 419
NcoI	CCATGG	1 cut(s)	646
NlaIII	CATG	5 cut(s)	274, 329, 506, 570, 650
NlaIV	GGNNCC	1 cut(s)	582
NmuCI	GTSAC	1 cut(s)	73
NsbI	TGCGCA	1 cut(s)	630
NsiI	ATGCAT	1 cut(s)	529
NspI	RCATGY	3 cut(s)	329, 506, 570
PaeI	GCATGC	1 cut(s)	329
PceI	AGGCCT	1 cut(s)	15
PciI	ACATGT	1 cut(s)	502
PctI	GAATGC	2 cut(s)	379, 469
PfeI	GAWTC	2 cut(s)	166, 667
PleI	GAGTC	1 cut(s)	130
PpsI	GAGTC	1 cut(s)	130
Ppu21I	YACGTR	1 cut(s)	434
PscI	ACATGT	1 cut(s)	502
PshBI	ATTAAT	1 cut(s)	96
PspN4I	GGNNCC	1 cut(s)	582
RsaI	GTAC	1 cut(s)	275
RsaNI	GTAC	1 cut(s)	274
RseI	CAYNNNNRTG	1 cut(s)	432
SaqAI	TTAA	3 cut(s)	96, 290, 558
SchI	GAGTC	1 cut(s)	131
SduI	GDGCHC	1 cut(s)	484
SfaNI	GCATC	1 cut(s)	514
SmiMI	CAYNNNNRTG	1 cut(s)	432
SmlI	CTYRAG	1 cut(s)	67
SmoI	CTYRAG	1 cut(s)	67
SphI	GCATGC	1 cut(s)	329
Sse9I	AATT	6 cut(s)	93, 179, 188, 228, 287, 414
SseBI	AGGCCT	1 cut(s)	15
SspMI	CTAG	2 cut(s)	53, 423
StuI	AGGCCT	1 cut(s)	15
StyI	CCWWGG	1 cut(s)	646
TaaI	ACNGT	2 cut(s)	541, 607
TaiI	ACGT	2 cut(s)	203, 436
TaqI	TCGA	2 cut(s)	156, 282
TasI	AATT	6 cut(s)	93, 179, 188, 228, 287, 414
TatI	WGTACW	1 cut(s)	273
TfiI	GAWTC	2 cut(s)	166, 667
Tru1I	TTAA	3 cut(s)	96, 290, 558
Tru9I	TTAA	3 cut(s)	96, 290, 558
TscAI	CASTG	1 cut(s)	375
TseFI	GTSAC	1 cut(s)	73
Tsp45I	GTSAC	1 cut(s)	73
TspDTI	ATGAA	3 cut(s)	24, 315, 465
TspRI	CASTG	1 cut(s)	375
VspI	ATTAAT	1 cut(s)	96
XbaI	TCTAGA	1 cut(s)	52
XceI	RCATGY	3 cut(s)	329, 506, 570
XspI	CTAG	2 cut(s)	53, 423
Zsp2I	ATGCAT	1 cut(s)	529

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.