Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001444.1

Orthogroup ID

OG0020731

Physical Location & Seq

Genomic Coordinates Reverse (-)

7890 .. 9949

Gene Structure 2060 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

atggttctcagcgaagtcaaggccgacgacgtcaaggtcataccggcgaacaagcactgcgagtgggccgatttcatggtcctcgccaccggaaggtccacctggcacggcaagaacatcgcccaagccctgatttacaaggcagggaaagtgatagttcatgctcttgatgagaatgctaaagcttactacaatctggagactctttggacaacaaagccgtctgagaaagaaccaattcaggaagcagattttgaggatttaagagaaggtcagaaacagatgatggcattgttccatgaataccatgttgatccttccaattctaacagcaatgacattctggatcacagtcgaggtagggcttttcctttattgatttatcttgccaagaatggtattgaatacctggttggcatatggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006417 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0043021 GO:0043023 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044087 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0060255 GO:0065007 GO:0080090 GO:0090069 GO:0090071 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RsfS

Protein Analysis

141

Amino Acids

16.07

Weight (kDa)

5.64

Isoelectric Point (pI)

27.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RsfS	PF02410	2 - 45	1.5e-06	Ribosomal silencing factor during starvation

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0020731)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0001444.1_g000002
rosa_roxburghii	Rroxscaffold_4G00330390
rosa_samantha	Rh3AG071500 Rh5CG585100 Rh6BG114200 Rh6DG102000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	35
AatII	GACGTC	1 cut(s)	33
AclWI	GGATC	2 cut(s)	308, 354
AcyI	GRCGYC	1 cut(s)	30
AfiI	CCNNNNNNNGG	1 cut(s)	93
AgsI	TTSAA	1 cut(s)	404
AjnI	CCWGG	2 cut(s)	101, 408
AjuI	GAANNNNNNNTTGG	1 cut(s)	396
AluBI	AGCT	1 cut(s)	185
AluI	AGCT	1 cut(s)	185
Alw26I	GTCTC	1 cut(s)	194
AlwI	GGATC	2 cut(s)	308, 354
AoxI	GGCC	2 cut(s)	21, 66
Asp700I	GAANNNNTTC	1 cut(s)	237
AspS9I	GGNCC	3 cut(s)	66, 79, 96
AvaII	GGWCC	2 cut(s)	79, 96
BccI	CCATC	1 cut(s)	280
BceAI	ACGGC	2 cut(s)	124, 205
BcgI	CGANNNNNNTGC	2 cut(s)	100, 134
BciT130I	CCWGG	2 cut(s)	103, 410
BcoDI	GTCTC	1 cut(s)	194
Bme1390I	CCNGG	2 cut(s)	103, 410
Bme18I	GGWCC	2 cut(s)	79, 96
BmgT120I	GGNCC	3 cut(s)	66, 79, 96
BmrFI	CCNGG	2 cut(s)	103, 410
BpmI	CTGGAG	1 cut(s)	218
BsaHI	GRCGYC	1 cut(s)	30
BsaWI	WCCGGW	1 cut(s)	89
Bsc4I	CCNNNNNNNGG	1 cut(s)	93
Bse118I	RCCGGY	1 cut(s)	43
Bse3DI	GCAATG	1 cut(s)	340
BseBI	CCWGG	2 cut(s)	103, 410
BseLI	CCNNNNNNNGG	1 cut(s)	93
BseMI	GCAATG	1 cut(s)	340
BseMII	CTCAG	2 cut(s)	22, 216
BshFI	GGCC	2 cut(s)	23, 68
BsiSI	CCGG	2 cut(s)	44, 90
BslI	CCNNNNNNNGG	1 cut(s)	93
BsmAI	GTCTC	1 cut(s)	194
BsmI	GAATGC	1 cut(s)	181
BsnI	GGCC	2 cut(s)	23, 68
Bsp143I	GATC	2 cut(s)	313, 346
BspANI	GGCC	2 cut(s)	23, 68
BspCNI	CTCAG	2 cut(s)	21, 217
BspPI	GGATC	2 cut(s)	308, 354
BsrDI	GCAATG	1 cut(s)	340
BsrFI	RCCGGY	1 cut(s)	43
BssAI	RCCGGY	1 cut(s)	43
BssMI	GATC	2 cut(s)	313, 346
BssNI	GRCGYC	1 cut(s)	30
Bst2UI	CCWGG	2 cut(s)	103, 410
Bst4CI	ACNGT	1 cut(s)	353
BstACI	GRCGYC	1 cut(s)	30
BstDEI	CTNAG	2 cut(s)	8, 225
BstKTI	GATC	2 cut(s)	316, 349
BstMAI	GTCTC	1 cut(s)	194
BstMBI	GATC	2 cut(s)	313, 346
BstNI	CCWGG	2 cut(s)	103, 410
BstSCI	CCNGG	2 cut(s)	101, 408
BsuRI	GGCC	2 cut(s)	23, 68
BtgZI	GCGATG	1 cut(s)	103
BtsI	GCAGTG	1 cut(s)	55
BtsIMutI	CAGTG	1 cut(s)	55
Cfr10I	RCCGGY	1 cut(s)	43
Cfr13I	GGNCC	3 cut(s)	66, 79, 96
CsiI	ACCWGGT	1 cut(s)	408
CviAII	CATG	4 cut(s)	76, 161, 299, 308
CviJI	RGCY	6 cut(s)	23, 68, 128, 185, 220, 365
CviKI_1	RGCY	6 cut(s)	23, 68, 128, 185, 220, 365
DdeI	CTNAG	2 cut(s)	8, 225
DpnI	GATC	2 cut(s)	315, 348
DpnII	GATC	2 cut(s)	313, 346
DrdI	GACNNNNNNGTC	1 cut(s)	35
DseDI	GACNNNNNNGTC	1 cut(s)	35
Eco47I	GGWCC	2 cut(s)	79, 96
EcoRII	CCWGG	2 cut(s)	101, 408
FaeI	CATG	4 cut(s)	79, 164, 302, 311
FaiI	YATR	7 cut(s)	41, 77, 162, 300, 309, 419, 421
FatI	CATG	4 cut(s)	75, 160, 298, 307
FauNDI	CATATG	1 cut(s)	419
GsuI	CTGGAG	1 cut(s)	218
HaeIII	GGCC	2 cut(s)	23, 68
HapII	CCGG	2 cut(s)	44, 90
Hin1I	GRCGYC	1 cut(s)	30
Hin1II	CATG	4 cut(s)	79, 164, 302, 311
HindIII	AAGCTT	1 cut(s)	183
HinfI	GANTC	1 cut(s)	202
HpaII	CCGG	2 cut(s)	44, 90
Hpy166II	GTNNAC	1 cut(s)	99
Hpy188I	TCNGA	2 cut(s)	226, 276
Hpy188III	TCNNGA	4 cut(s)	167, 197, 242, 344
Hpy8I	GTNNAC	1 cut(s)	99
Hpy99I	CGWCG	2 cut(s)	29, 32
HpyAV	CCTTC	3 cut(s)	87, 263, 327
HpyCH4III	ACNGT	1 cut(s)	353
HpyCH4IV	ACGT	1 cut(s)	30
HpyF3I	CTNAG	2 cut(s)	8, 225
HpySE526I	ACGT	1 cut(s)	30
Hsp92I	GRCGYC	1 cut(s)	30
Hsp92II	CATG	4 cut(s)	79, 164, 302, 311
Kzo9I	GATC	2 cut(s)	313, 346
MabI	ACCWGGT	1 cut(s)	408
MaeII	ACGT	1 cut(s)	30
MalI	GATC	2 cut(s)	315, 348
MboI	GATC	2 cut(s)	313, 346
MluCI	AATT	2 cut(s)	237, 322
MlyI	GAGTC	1 cut(s)	196
MnlI	CCTC	3 cut(s)	92, 250, 350
MroXI	GAANNNNTTC	1 cut(s)	237
MseI	TTAA	1 cut(s)	263
MspI	CCGG	2 cut(s)	44, 90
MspR9I	CCNGG	2 cut(s)	103, 410
Mva1269I	GAATGC	1 cut(s)	181
MvaI	CCWGG	2 cut(s)	103, 410
NdeI	CATATG	1 cut(s)	419
NdeII	GATC	2 cut(s)	313, 346
NlaIII	CATG	4 cut(s)	79, 164, 302, 311
PctI	GAATGC	1 cut(s)	181
PdmI	GAANNNNTTC	1 cut(s)	237
PflFI	GACNNNGTC	1 cut(s)	29
PleI	GAGTC	1 cut(s)	196
PpsI	GAGTC	1 cut(s)	196
Psp6I	CCWGG	2 cut(s)	101, 408
PspGI	CCWGG	2 cut(s)	101, 408
PspPI	GGNCC	3 cut(s)	66, 79, 96
PsyI	GACNNNGTC	1 cut(s)	29
SaqAI	TTAA	1 cut(s)	263
Sau3AI	GATC	2 cut(s)	313, 346
Sau96I	GGNCC	3 cut(s)	66, 79, 96
SchI	GAGTC	1 cut(s)	196
ScrFI	CCNGG	2 cut(s)	103, 410
SetI	ASST	8 cut(s)	33, 39, 98, 104, 187, 274, 361, 411
SexAI	ACCWGGT	1 cut(s)	408
SinI	GGWCC	2 cut(s)	79, 96
Sse9I	AATT	2 cut(s)	237, 322
StyD4I	CCNGG	2 cut(s)	101, 408
TaaI	ACNGT	1 cut(s)	353
TaiI	ACGT	1 cut(s)	33
TaqI	TCGA	1 cut(s)	355
TasI	AATT	2 cut(s)	237, 322
Tru1I	TTAA	1 cut(s)	263
Tru9I	TTAA	1 cut(s)	263
TscAI	CASTG	1 cut(s)	62
TspDTI	ATGAA	3 cut(s)	64, 149, 315
TspRI	CASTG	1 cut(s)	62
Tth111I	GACNNNGTC	1 cut(s)	29
VpaK11BI	GGWCC	2 cut(s)	79, 96
XmnI	GAANNNNTTC	1 cut(s)	237
ZraI	GACGTC	1 cut(s)	31

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.