Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0020731

Physical Location & Seq

Genomic Coordinates Forward (+)

82908661 .. 82909786

Gene Structure 1126 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG585100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 219 bp

ATGGGGGACGATATGTTTTCTTTTTTTGGTTTTGTAATAGTCATCTTCACTTTTTCAGGGAAAGTGATAGTTCATGCTCTTGATGAGAATGCTAAAGCTTACTACAATCTGGAGACTCTTTGGACAACAAAGCCGTCTGAGAAAGAACCAATTCAGGAAGCAGATTTTGAGGATTTAAGAGAAGGTCAGAAACAGATGATGGCATTGTTCCATGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006417 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0043021 GO:0043023 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044087 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0060255 GO:0065007 GO:0080090 GO:0090069 GO:0090071 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RsfS

Protein Analysis

72

Amino Acids

8.38

Weight (kDa)

4.59

Isoelectric Point (pI)

27.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020731)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0001444.1_g000002
rosa_roxburghii	Rroxscaffold_4G00330390
rosa_samantha	Rh3AG071500 Rh5CG585100 Rh6BG114200 Rh6DG102000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AluBI	AGCT	1 cut(s)	98
AluI	AGCT	1 cut(s)	98
Alw26I	GTCTC	1 cut(s)	107
Asp700I	GAANNNNTTC	1 cut(s)	150
BccI	CCATC	1 cut(s)	193
BceAI	ACGGC	1 cut(s)	118
BcoDI	GTCTC	1 cut(s)	107
BpmI	CTGGAG	1 cut(s)	131
BseMII	CTCAG	1 cut(s)	129
BslFI	GGGAC	1 cut(s)	20
BsmAI	GTCTC	1 cut(s)	107
BsmFI	GGGAC	1 cut(s)	20
BsmI	GAATGC	1 cut(s)	94
BspCNI	CTCAG	1 cut(s)	130
BstDEI	CTNAG	1 cut(s)	138
BstMAI	GTCTC	1 cut(s)	107
CviAII	CATG	2 cut(s)	74, 212
CviJI	RGCY	2 cut(s)	98, 133
CviKI_1	RGCY	2 cut(s)	98, 133
DdeI	CTNAG	1 cut(s)	138
FaeI	CATG	2 cut(s)	77, 215
FaiI	YATR	3 cut(s)	14, 75, 213
FaqI	GGGAC	1 cut(s)	20
FatI	CATG	2 cut(s)	73, 211
GsuI	CTGGAG	1 cut(s)	131
Hin1II	CATG	2 cut(s)	77, 215
HindIII	AAGCTT	1 cut(s)	96
HinfI	GANTC	1 cut(s)	115
Hpy188I	TCNGA	2 cut(s)	139, 189
Hpy188III	TCNNGA	3 cut(s)	80, 110, 155
HpyAV	CCTTC	1 cut(s)	176
HpyF3I	CTNAG	1 cut(s)	138
Hsp92II	CATG	2 cut(s)	77, 215
LpnPI	CCDG	3 cut(s)	42, 95, 140
MboII	GAAGA	1 cut(s)	37
MluCI	AATT	1 cut(s)	150
MlyI	GAGTC	1 cut(s)	109
MnlI	CCTC	1 cut(s)	163
MroXI	GAANNNNTTC	1 cut(s)	150
MseI	TTAA	1 cut(s)	176
Mva1269I	GAATGC	1 cut(s)	94
NlaIII	CATG	2 cut(s)	77, 215
PctI	GAATGC	1 cut(s)	94
PdmI	GAANNNNTTC	1 cut(s)	150
PleI	GAGTC	1 cut(s)	109
PpsI	GAGTC	1 cut(s)	109
SaqAI	TTAA	1 cut(s)	176
SchI	GAGTC	1 cut(s)	109
SetI	ASST	2 cut(s)	100, 187
SgeI	CNNG	5 cut(s)	69, 86, 92, 122, 167
Sse9I	AATT	1 cut(s)	150
TasI	AATT	1 cut(s)	150
Tru1I	TTAA	1 cut(s)	176
Tru9I	TTAA	1 cut(s)	176
TspDTI	ATGAA	1 cut(s)	62
XmnI	GAANNNNTTC	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.