Iojap-related
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_multiflora | Rmu_sc0001444.1_g000002 |
| rosa_roxburghii | Rroxscaffold_4G00330390 |
| rosa_samantha | Rh3AG071500 Rh5CG585100 Rh6BG114200 Rh6DG102000 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 321 |
| AclWI | GGATC | 2 cut(s) | 238, 355 |
| AcsI | RAATTY | 1 cut(s) | 28 |
| AdeI | CACNNNGTG | 1 cut(s) | 57 |
| AgsI | TTSAA | 3 cut(s) | 176, 259, 388 |
| AjnI | CCWGG | 1 cut(s) | 246 |
| AluBI | AGCT | 1 cut(s) | 191 |
| AluI | AGCT | 1 cut(s) | 191 |
| Alw21I | GWGCWC | 1 cut(s) | 172 |
| AlwI | GGATC | 2 cut(s) | 238, 355 |
| ApoI | RAATTY | 1 cut(s) | 28 |
| AspS9I | GGNCC | 1 cut(s) | 60 |
| AsuHPI | GGTGA | 1 cut(s) | 342 |
| AvaII | GGWCC | 1 cut(s) | 60 |
| Bbv12I | GWGCWC | 1 cut(s) | 172 |
| BceAI | ACGGC | 1 cut(s) | 211 |
| BciT130I | CCWGG | 1 cut(s) | 248 |
| BclI | TGATCA | 1 cut(s) | 69 |
| BfaI | CTAG | 1 cut(s) | 186 |
| BfmI | CTRYAG | 1 cut(s) | 219 |
| Bme1390I | CCNGG | 1 cut(s) | 248 |
| Bme18I | GGWCC | 1 cut(s) | 60 |
| BmgT120I | GGNCC | 1 cut(s) | 60 |
| BmrFI | CCNGG | 1 cut(s) | 248 |
| BmsI | GCATC | 1 cut(s) | 306 |
| BseBI | CCWGG | 1 cut(s) | 248 |
| BseGI | GGATG | 1 cut(s) | 308 |
| BseMII | CTCAG | 1 cut(s) | 222 |
| BsiHKAI | GWGCWC | 1 cut(s) | 172 |
| BsmI | GAATGC | 1 cut(s) | 323 |
| Bsp1286I | GDGCHC | 1 cut(s) | 172 |
| Bsp143I | GATC | 4 cut(s) | 69, 243, 342, 347 |
| BspACI | CCGC | 1 cut(s) | 321 |
| BspCNI | CTCAG | 1 cut(s) | 223 |
| BspPI | GGATC | 2 cut(s) | 238, 355 |
| BssMI | GATC | 4 cut(s) | 69, 243, 342, 347 |
| Bst2UI | CCWGG | 1 cut(s) | 248 |
| Bst4CI | ACNGT | 2 cut(s) | 55, 67 |
| BstDEI | CTNAG | 1 cut(s) | 231 |
| BstF5I | GGATG | 1 cut(s) | 308 |
| BstKTI | GATC | 4 cut(s) | 72, 246, 345, 350 |
| BstMBI | GATC | 4 cut(s) | 69, 243, 342, 347 |
| BstNI | CCWGG | 1 cut(s) | 248 |
| BstSCI | CCNGG | 1 cut(s) | 246 |
| BstSFI | CTRYAG | 1 cut(s) | 219 |
| BtsCI | GGATG | 1 cut(s) | 308 |
| BtsIMutI | CAGTG | 2 cut(s) | 60, 72 |
| Cfr13I | GGNCC | 1 cut(s) | 60 |
| CviAII | CATG | 2 cut(s) | 331, 395 |
| CviJI | RGCY | 3 cut(s) | 76, 191, 226 |
| CviKI_1 | RGCY | 3 cut(s) | 76, 191, 226 |
| DdeI | CTNAG | 1 cut(s) | 231 |
| DpnI | GATC | 4 cut(s) | 71, 245, 344, 349 |
| DpnII | GATC | 4 cut(s) | 69, 243, 342, 347 |
| DraIII | CACNNNGTG | 1 cut(s) | 57 |
| Eco47I | GGWCC | 1 cut(s) | 60 |
| EcoRI | GAATTC | 1 cut(s) | 28 |
| EcoRII | CCWGG | 1 cut(s) | 246 |
| EcoT22I | ATGCAT | 1 cut(s) | 299 |
| FaeI | CATG | 2 cut(s) | 334, 398 |
| FaiI | YATR | 8 cut(s) | 295, 302, 304, 317, 332, 375, 396, 401 |
| FatI | CATG | 2 cut(s) | 330, 394 |
| FauI | CCCGC | 1 cut(s) | 328 |
| FbaI | TGATCA | 1 cut(s) | 69 |
| FokI | GGATG | 1 cut(s) | 295 |
| FspBI | CTAG | 1 cut(s) | 186 |
| Hin1II | CATG | 2 cut(s) | 334, 398 |
| HincII | GTYRAC | 1 cut(s) | 264 |
| HindII | GTYRAC | 1 cut(s) | 264 |
| HphI | GGTGA | 1 cut(s) | 342 |
| Hpy166II | GTNNAC | 3 cut(s) | 51, 63, 264 |
| Hpy188I | TCNGA | 2 cut(s) | 232, 347 |
| Hpy188III | TCNNGA | 1 cut(s) | 173 |
| Hpy8I | GTNNAC | 3 cut(s) | 51, 63, 264 |
| HpyCH4III | ACNGT | 2 cut(s) | 55, 67 |
| HpyCH4V | TGCA | 3 cut(s) | 290, 297, 366 |
| HpyF3I | CTNAG | 1 cut(s) | 231 |
| Hsp92II | CATG | 2 cut(s) | 334, 398 |
| Ksp22I | TGATCA | 1 cut(s) | 69 |
| Kzo9I | GATC | 4 cut(s) | 69, 243, 342, 347 |
| LpnPI | CCDG | 3 cut(s) | 135, 233, 260 |
| LweI | GCATC | 1 cut(s) | 306 |
| MaeI | CTAG | 1 cut(s) | 186 |
| MaeIII | GTNAC | 1 cut(s) | 40 |
| MalI | GATC | 4 cut(s) | 71, 245, 344, 349 |
| MboI | GATC | 4 cut(s) | 69, 243, 342, 347 |
| MboII | GAAGA | 2 cut(s) | 130, 188 |
| MhlI | GDGCHC | 1 cut(s) | 172 |
| MluCI | AATT | 4 cut(s) | 28, 199, 268, 355 |
| MmeI | TCCRAC | 1 cut(s) | 70 |
| MnlI | CCTC | 2 cut(s) | 4, 89 |
| Mph1103I | ATGCAT | 1 cut(s) | 299 |
| MspR9I | CCNGG | 1 cut(s) | 248 |
| Mva1269I | GAATGC | 1 cut(s) | 323 |
| MvaI | CCWGG | 1 cut(s) | 248 |
| NdeII | GATC | 4 cut(s) | 69, 243, 342, 347 |
| NlaIII | CATG | 2 cut(s) | 334, 398 |
| NsiI | ATGCAT | 1 cut(s) | 299 |
| PctI | GAATGC | 1 cut(s) | 323 |
| Psp6I | CCWGG | 1 cut(s) | 246 |
| PspGI | CCWGG | 1 cut(s) | 246 |
| PspPI | GGNCC | 1 cut(s) | 60 |
| Sau3AI | GATC | 4 cut(s) | 69, 243, 342, 347 |
| Sau96I | GGNCC | 1 cut(s) | 60 |
| ScrFI | CCNGG | 1 cut(s) | 248 |
| SduI | GDGCHC | 1 cut(s) | 172 |
| SetI | ASST | 2 cut(s) | 193, 252 |
| SfaNI | GCATC | 1 cut(s) | 306 |
| SfcI | CTRYAG | 1 cut(s) | 219 |
| SinI | GGWCC | 1 cut(s) | 60 |
| Sse9I | AATT | 4 cut(s) | 28, 199, 268, 355 |
| SsiI | CCGC | 1 cut(s) | 321 |
| SspMI | CTAG | 1 cut(s) | 186 |
| StyD4I | CCNGG | 1 cut(s) | 246 |
| TaaI | ACNGT | 2 cut(s) | 55, 67 |
| TasI | AATT | 4 cut(s) | 28, 199, 268, 355 |
| TscAI | CASTG | 2 cut(s) | 60, 72 |
| TspDTI | ATGAA | 2 cut(s) | 41, 316 |
| TspRI | CASTG | 2 cut(s) | 60, 72 |
| VpaK11BI | GGWCC | 1 cut(s) | 60 |
| XapI | RAATTY | 1 cut(s) | 28 |
| XspI | CTAG | 1 cut(s) | 186 |
| Zsp2I | ATGCAT | 1 cut(s) | 299 |