Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0020731

Physical Location & Seq

Genomic Coordinates Forward (+)

5518364 .. 5520392

Gene Structure 2029 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG071500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGGTGCTTCCCACTATTGAAGGGAAAGAGGGAGGCAAGTGGATTGTCATTGACTCTGGGAAAGTGATAGTTCATGCTCTTGATGAGAATGCTAAAGCTTACTACAATCTGGAGACTCTTTGGACAACAAAGCCGTCTGAGAAAGAACCAATTCAGCCTGCATTTTTGGAGGATAAATCACTAATTCCTTTTCTGGCTGTAAACAAGGAAGCAGATCCTGAGGATTTAAGAGAAGGTCAGAAACAGATGATGGCATTGTTCCATGAATTAGAAACATGGCGAGAAAGTTCCATCTTTTCAAAATGGTGGTGCTCTCTGGTTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006417 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0043021 GO:0043023 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044087 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0060255 GO:0065007 GO:0080090 GO:0090069 GO:0090071 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RsfS

Protein Analysis

108

Amino Acids

12.49

Weight (kDa)

4.89

Isoelectric Point (pI)

37.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RsfS	PF02410	5 - 41	3.6e-10	Ribosomal silencing factor during starvation

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0020731)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0001444.1_g000002
rosa_roxburghii	Rroxscaffold_4G00330390
rosa_samantha	Rh3AG071500 Rh5CG585100 Rh6BG114200 Rh6DG102000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	209
AgsI	TTSAA	2 cut(s)	20, 300
AluBI	AGCT	1 cut(s)	98
AluI	AGCT	1 cut(s)	98
Alw21I	GWGCWC	1 cut(s)	314
Alw26I	GTCTC	1 cut(s)	107
AlwI	GGATC	1 cut(s)	209
AlwNI	CAGNNNCTG	1 cut(s)	218
Asp700I	GAANNNNTTC	1 cut(s)	150
AxyI	CCTNAGG	1 cut(s)	219
Bbv12I	GWGCWC	1 cut(s)	314
BccI	CCATC	2 cut(s)	244, 299
BceAI	ACGGC	1 cut(s)	118
BcoDI	GTCTC	1 cut(s)	107
BpmI	CTGGAG	1 cut(s)	131
Bse21I	CCTNAGG	1 cut(s)	219
BseMII	CTCAG	2 cut(s)	129, 210
BsiHKAI	GWGCWC	1 cut(s)	314
BsmAI	GTCTC	1 cut(s)	107
BsmI	GAATGC	1 cut(s)	94
Bsp1286I	GDGCHC	1 cut(s)	314
Bsp143I	GATC	1 cut(s)	214
BspCNI	CTCAG	2 cut(s)	130, 211
BspPI	GGATC	1 cut(s)	209
BssMI	GATC	1 cut(s)	214
BstC8I	GCNNGC	1 cut(s)	159
BstDEI	CTNAG	2 cut(s)	138, 219
BstKTI	GATC	1 cut(s)	217
BstMAI	GTCTC	1 cut(s)	107
BstMBI	GATC	1 cut(s)	214
BstX2I	RGATCY	1 cut(s)	214
BstYI	RGATCY	1 cut(s)	214
Bsu36I	CCTNAGG	1 cut(s)	219
Cac8I	GCNNGC	1 cut(s)	159
CaiI	CAGNNNCTG	1 cut(s)	218
CviAII	CATG	3 cut(s)	74, 263, 276
CviJI	RGCY	4 cut(s)	98, 133, 157, 197
CviKI_1	RGCY	4 cut(s)	98, 133, 157, 197
DdeI	CTNAG	2 cut(s)	138, 219
DpnI	GATC	1 cut(s)	216
DpnII	GATC	1 cut(s)	214
Eco81I	CCTNAGG	1 cut(s)	219
FaeI	CATG	3 cut(s)	77, 266, 279
FaiI	YATR	3 cut(s)	75, 264, 277
FatI	CATG	3 cut(s)	73, 262, 275
GsuI	CTGGAG	1 cut(s)	131
Hin1II	CATG	3 cut(s)	77, 266, 279
HindIII	AAGCTT	1 cut(s)	96
HinfI	GANTC	2 cut(s)	53, 115
Hpy166II	GTNNAC	2 cut(s)	202, 322
Hpy188I	TCNGA	2 cut(s)	139, 240
Hpy188III	TCNNGA	3 cut(s)	80, 110, 218
Hpy8I	GTNNAC	2 cut(s)	202, 322
HpyAV	CCTTC	2 cut(s)	14, 227
HpyCH4V	TGCA	1 cut(s)	161
HpyF3I	CTNAG	2 cut(s)	138, 219
Hsp92II	CATG	3 cut(s)	77, 266, 279
Kzo9I	GATC	1 cut(s)	214
LpnPI	CCDG	6 cut(s)	42, 95, 171, 179, 231, 302
MalI	GATC	1 cut(s)	216
MboI	GATC	1 cut(s)	214
MflI	RGATCY	1 cut(s)	214
MhlI	GDGCHC	1 cut(s)	314
MluCI	AATT	3 cut(s)	150, 183, 266
MlyI	GAGTC	2 cut(s)	47, 109
MnlI	CCTC	4 cut(s)	22, 26, 163, 214
MroXI	GAANNNNTTC	1 cut(s)	150
MseI	TTAA	1 cut(s)	227
Mva1269I	GAATGC	1 cut(s)	94
NdeII	GATC	1 cut(s)	214
NlaIII	CATG	3 cut(s)	77, 266, 279
PctI	GAATGC	1 cut(s)	94
PdmI	GAANNNNTTC	1 cut(s)	150
PleI	GAGTC	2 cut(s)	47, 109
PpsI	GAGTC	2 cut(s)	47, 109
PstNI	CAGNNNCTG	1 cut(s)	218
PsuI	RGATCY	1 cut(s)	214
SaqAI	TTAA	1 cut(s)	227
Sau3AI	GATC	1 cut(s)	214
SchI	GAGTC	2 cut(s)	47, 109
SduI	GDGCHC	1 cut(s)	314
SetI	ASST	2 cut(s)	100, 238
Sse9I	AATT	3 cut(s)	150, 183, 266
TasI	AATT	3 cut(s)	150, 183, 266
Tru1I	TTAA	1 cut(s)	227
Tru9I	TTAA	1 cut(s)	227
TspDTI	ATGAA	2 cut(s)	62, 279
XmnI	GAANNNNTTC	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.