Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0020731

Physical Location & Seq

Genomic Coordinates Reverse (-)

64054911 .. 64059945

Gene Structure 5035 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00330390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGTGTGGTCAAGTTAGACCAGAGCAATGTGTGGTTTTGAGAGTTGTTGGACCCAAAGGGGGTCGAGTGTTTGTTGGGCCCAAAGGGGGTCGAGTGTTTGTTGTACCCAATAGGGGTTGGTTTCCATCTCTGCACCAGACCTTCTCCTCCTCCGCCGCCGCCGCCGCCAAGGAAGGCTTGCTTGATCTCCAGGAGGTCGAGATGGTTCTCAGTGAAGTCAAGGCCGACGACGTCAAGGTCAGACCGGCGAACAAGCACTGCGAGTGGGCCGATTTCATGGTCCTCGCCACCGGAAGGTCCACCTGGCACGTCAAGAACATCGCCCAAGCCCTAATTTACAAGGCAGGGAAAGTGATAGTTCATGCTCTTGATGAGAATGCTAAAGCTTACTACAATCTGGAGACTCTTTGGACAACAAAGCCGTCTGAGAAAGAACCAATTCAGGACGAAAACAGCAAAGCTGAAGAAGCGAAACAGAATAAGACAGATAAGATCTACAACCGATACAAAGATTCATCTGTGATGAATGATAGCAATGGCTTCTCTGGTGCAAAGTTGGAAGATCTTCAAGAATTTTTAGACAATATGAAAACAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006417 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0043021 GO:0043023 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044087 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0060255 GO:0065007 GO:0080090 GO:0090069 GO:0090071 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RsfS

Protein Analysis

199

Amino Acids

22.21

Weight (kDa)

7.69

Isoelectric Point (pI)

36.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RsfS	PF02410	67 - 114	1.3e-06	Ribosomal silencing factor during starvation

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020731)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0001444.1_g000002
rosa_roxburghii	Rroxscaffold_4G00330390
rosa_samantha	Rh3AG071500 Rh5CG585100 Rh6BG114200 Rh6DG102000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	236
AatII	GACGTC	1 cut(s)	234
AciI	CCGC	5 cut(s)	153, 156, 159, 162, 165
AcsI	RAATTY	1 cut(s)	572
AcuI	CTGAAG	1 cut(s)	483
AcyI	GRCGYC	1 cut(s)	231
AfaI	GTAC	1 cut(s)	105
AfiI	CCNNNNNNNGG	4 cut(s)	59, 86, 113, 294
AgsI	TTSAA	1 cut(s)	569
AjiI	CACGTC	1 cut(s)	310
AjnI	CCWGG	2 cut(s)	189, 302
AluBI	AGCT	2 cut(s)	386, 461
AluI	AGCT	2 cut(s)	386, 461
Alw26I	GTCTC	1 cut(s)	395
AoxI	GGCC	3 cut(s)	77, 222, 267
ApaI	GGGCCC	1 cut(s)	81
ApoI	RAATTY	1 cut(s)	572
Asp700I	GAANNNNTTC	2 cut(s)	438, 564
AspS9I	GGNCC	6 cut(s)	50, 77, 78, 267, 280, 297
AvaII	GGWCC	3 cut(s)	50, 280, 297
BaeGI	GKGCMC	1 cut(s)	81
BanII	GRGCYC	1 cut(s)	81
BccI	CCATC	2 cut(s)	133, 196
BceAI	ACGGC	1 cut(s)	406
BciT130I	CCWGG	2 cut(s)	191, 304
BcoDI	GTCTC	1 cut(s)	395
BglII	AGATCT	2 cut(s)	492, 562
BisI	GCNGC	4 cut(s)	156, 159, 162, 165
BlsI	GCNGC	4 cut(s)	157, 160, 163, 166
Bme1390I	CCNGG	2 cut(s)	191, 304
Bme18I	GGWCC	3 cut(s)	50, 280, 297
BmgBI	CACGTC	1 cut(s)	310
BmgT120I	GGNCC	6 cut(s)	50, 77, 78, 267, 280, 297
BmiI	GGNNCC	2 cut(s)	52, 79
BmrFI	CCNGG	2 cut(s)	191, 304
BpmI	CTGGAG	2 cut(s)	173, 419
BsaHI	GRCGYC	1 cut(s)	231
BsaJI	CCNNGG	1 cut(s)	168
BsaWI	WCCGGW	1 cut(s)	290
Bsc4I	CCNNNNNNNGG	4 cut(s)	59, 86, 113, 294
Bse118I	RCCGGY	1 cut(s)	244
Bse3DI	GCAATG	2 cut(s)	32, 541
BseBI	CCWGG	2 cut(s)	191, 304
BseDI	CCNNGG	1 cut(s)	168
BseLI	CCNNNNNNNGG	4 cut(s)	59, 86, 113, 294
BseMI	GCAATG	2 cut(s)	32, 541
BseMII	CTCAG	2 cut(s)	223, 417
BseRI	GAGGAG	2 cut(s)	136, 139
BseSI	GKGCMC	1 cut(s)	81
BsgI	GTGCAG	1 cut(s)	116
BshFI	GGCC	3 cut(s)	79, 224, 269
BsiSI	CCGG	2 cut(s)	245, 291
BslI	CCNNNNNNNGG	4 cut(s)	59, 86, 113, 294
BsmAI	GTCTC	1 cut(s)	395
BsmI	GAATGC	1 cut(s)	382
BsnI	GGCC	3 cut(s)	79, 224, 269
Bsp120I	GGGCCC	1 cut(s)	77
Bsp1286I	GDGCHC	1 cut(s)	81
Bsp143I	GATC	3 cut(s)	184, 492, 562
BspACI	CCGC	5 cut(s)	153, 156, 159, 162, 165
BspANI	GGCC	3 cut(s)	79, 224, 269
BspCNI	CTCAG	2 cut(s)	222, 418
BspLI	GGNNCC	2 cut(s)	52, 79
BsrDI	GCAATG	2 cut(s)	32, 541
BsrFI	RCCGGY	1 cut(s)	244
BssAI	RCCGGY	1 cut(s)	244
BssECI	CCNNGG	1 cut(s)	168
BssMI	GATC	3 cut(s)	184, 492, 562
BssNI	GRCGYC	1 cut(s)	231
BssT1I	CCWWGG	1 cut(s)	168
Bst2UI	CCWGG	2 cut(s)	191, 304
BstACI	GRCGYC	1 cut(s)	231
BstC8I	GCNNGC	1 cut(s)	179
BstDEI	CTNAG	2 cut(s)	209, 426
BstKTI	GATC	3 cut(s)	187, 495, 565
BstMAI	GTCTC	1 cut(s)	395
BstMBI	GATC	3 cut(s)	184, 492, 562
BstMWI	GCNNNNNNNGC	3 cut(s)	161, 164, 467
BstNI	CCWGG	2 cut(s)	191, 304
BstSCI	CCNGG	2 cut(s)	189, 302
BstSLI	GKGCMC	1 cut(s)	81
BstX2I	RGATCY	2 cut(s)	492, 562
BstYI	RGATCY	2 cut(s)	492, 562
BsuRI	GGCC	3 cut(s)	79, 224, 269
BtgZI	GCGATG	1 cut(s)	304
BtrI	CACGTC	1 cut(s)	310
BtsI	GCAGTG	1 cut(s)	256
BtsIMutI	CAGTG	2 cut(s)	217, 256
Cac8I	GCNNGC	1 cut(s)	179
Cfr10I	RCCGGY	1 cut(s)	244
Cfr13I	GGNCC	6 cut(s)	50, 77, 78, 267, 280, 297
Csp6I	GTAC	1 cut(s)	104
CviAII	CATG	2 cut(s)	277, 362
CviJI	RGCY	9 cut(s)	79, 177, 224, 269, 329, 386, 421, 461, 540
CviKI_1	RGCY	9 cut(s)	79, 177, 224, 269, 329, 386, 421, 461, 540
CviQI	GTAC	1 cut(s)	104
DdeI	CTNAG	2 cut(s)	209, 426
DpnI	GATC	3 cut(s)	186, 494, 564
DpnII	GATC	3 cut(s)	184, 492, 562
DrdI	GACNNNNNNGTC	1 cut(s)	236
DseDI	GACNNNNNNGTC	1 cut(s)	236
EciI	GGCGGA	1 cut(s)	142
Eco130I	CCWWGG	1 cut(s)	168
Eco24I	GRGCYC	1 cut(s)	81
Eco47I	GGWCC	3 cut(s)	50, 280, 297
Eco57I	CTGAAG	1 cut(s)	483
EcoRII	CCWGG	2 cut(s)	189, 302
EcoT14I	CCWWGG	1 cut(s)	168
EcoT38I	GRGCYC	1 cut(s)	81
ErhI	CCWWGG	1 cut(s)	168
FaeI	CATG	2 cut(s)	280, 365
FaiI	YATR	3 cut(s)	278, 363, 587
FalI	AAGNNNNNCTT	4 cut(s)	161, 193, 165, 197
FatI	CATG	2 cut(s)	276, 361
Fnu4HI	GCNGC	4 cut(s)	156, 159, 162, 165
FriOI	GRGCYC	1 cut(s)	81
Fsp4HI	GCNGC	4 cut(s)	156, 159, 162, 165
GluI	GCNGC	4 cut(s)	156, 159, 162, 165
GsuI	CTGGAG	2 cut(s)	173, 419
HaeIII	GGCC	3 cut(s)	79, 224, 269
HapII	CCGG	2 cut(s)	245, 291
Hin1I	GRCGYC	1 cut(s)	231
Hin1II	CATG	2 cut(s)	280, 365
HindIII	AAGCTT	1 cut(s)	384
HinfI	GANTC	2 cut(s)	403, 512
HpaII	CCGG	2 cut(s)	245, 291
Hpy166II	GTNNAC	1 cut(s)	300
Hpy188I	TCNGA	2 cut(s)	242, 427
Hpy188III	TCNNGA	6 cut(s)	199, 313, 368, 398, 443, 569
Hpy8I	GTNNAC	1 cut(s)	300
Hpy99I	CGWCG	2 cut(s)	230, 233
HpyAV	CCTTC	3 cut(s)	151, 167, 288
HpyCH4IV	ACGT	2 cut(s)	231, 309
HpyCH4V	TGCA	2 cut(s)	133, 551
HpyF10VI	GCNNNNNNNGC	3 cut(s)	161, 164, 467
HpyF3I	CTNAG	2 cut(s)	209, 426
HpySE526I	ACGT	2 cut(s)	231, 309
Hsp92I	GRCGYC	1 cut(s)	231
Hsp92II	CATG	2 cut(s)	280, 365
Kzo9I	GATC	3 cut(s)	184, 492, 562
MaeII	ACGT	2 cut(s)	231, 309
MalI	GATC	3 cut(s)	186, 494, 564
MboI	GATC	3 cut(s)	184, 492, 562
MboII	GAAGA	3 cut(s)	476, 557, 572
MflI	RGATCY	2 cut(s)	492, 562
MhlI	GDGCHC	1 cut(s)	81
MluCI	AATT	3 cut(s)	333, 438, 572
MlyI	GAGTC	1 cut(s)	397
MmeI	TCCRAC	2 cut(s)	28, 537
MnlI	CCTC	4 cut(s)	157, 160, 187, 293
MroXI	GAANNNNTTC	2 cut(s)	438, 564
MspI	CCGG	2 cut(s)	245, 291
MspR9I	CCNGG	2 cut(s)	191, 304
Mva1269I	GAATGC	1 cut(s)	382
MvaI	CCWGG	2 cut(s)	191, 304
MwoI	GCNNNNNNNGC	3 cut(s)	161, 164, 467
NdeII	GATC	3 cut(s)	184, 492, 562
NlaIII	CATG	2 cut(s)	280, 365
NlaIV	GGNNCC	2 cut(s)	52, 79
PctI	GAATGC	1 cut(s)	382
PdmI	GAANNNNTTC	2 cut(s)	438, 564
PfeI	GAWTC	1 cut(s)	512
PflFI	GACNNNGTC	1 cut(s)	230
PfoI	TCCNGGA	1 cut(s)	189
PkrI	GCNGC	4 cut(s)	157, 160, 163, 166
PleI	GAGTC	1 cut(s)	397
PpsI	GAGTC	1 cut(s)	397
Psp6I	CCWGG	2 cut(s)	189, 302
PspGI	CCWGG	2 cut(s)	189, 302
PspN4I	GGNNCC	2 cut(s)	52, 79
PspOMI	GGGCCC	1 cut(s)	77
PspPI	GGNCC	6 cut(s)	50, 77, 78, 267, 280, 297
PsuI	RGATCY	2 cut(s)	492, 562
PsyI	GACNNNGTC	1 cut(s)	230
RsaI	GTAC	1 cut(s)	105
RsaNI	GTAC	1 cut(s)	104
SatI	GCNGC	4 cut(s)	156, 159, 162, 165
Sau3AI	GATC	3 cut(s)	184, 492, 562
Sau96I	GGNCC	6 cut(s)	50, 77, 78, 267, 280, 297
SchI	GAGTC	1 cut(s)	397
ScrFI	CCNGG	2 cut(s)	191, 304
SduI	GDGCHC	1 cut(s)	81
SetI	ASST	9 cut(s)	143, 198, 234, 240, 299, 305, 312, 388, 463
SinI	GGWCC	3 cut(s)	50, 280, 297
Sse9I	AATT	3 cut(s)	333, 438, 572
SsiI	CCGC	5 cut(s)	153, 156, 159, 162, 165
StyD4I	CCNGG	2 cut(s)	189, 302
StyI	CCWWGG	1 cut(s)	168
TaiI	ACGT	2 cut(s)	234, 312
TaqI	TCGA	3 cut(s)	64, 91, 198
TasI	AATT	3 cut(s)	333, 438, 572
TauI	GCSGC	4 cut(s)	158, 161, 164, 167
TfiI	GAWTC	1 cut(s)	512
TscAI	CASTG	2 cut(s)	217, 263
TspDTI	ATGAA	4 cut(s)	265, 350, 504, 539
TspRI	CASTG	2 cut(s)	217, 263
Tth111I	GACNNNGTC	1 cut(s)	230
VpaK11BI	GGWCC	3 cut(s)	50, 280, 297
XapI	RAATTY	1 cut(s)	572
XmnI	GAANNNNTTC	2 cut(s)	438, 564
ZraI	GACGTC	1 cut(s)	232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.