Rmu_sc0001493.1_g000078

Serine-rich protein-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001493.1
OG0020732
Physical Location & Seq
Reverse (-)
290961 .. 291416
456 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 456 bp
atgcagtccaaccctgaagacgacgaagaagctccagtcggagctccagccactccaacgtcggaaatcagactccagaccaccagcttctcgtctccgtcgtcagcctttttcaacaaccaccaagaccaccatagccactaccaccaccaccgttccgcatcaccgacgcatatcaatctctacacctccagtgctctgtctccagctttccgcttctccatcgagcaccgttccatctccccaaaccgatccatcaccatttccaagaagaacagcctgatcgcggcggccaggaagaagtgtatgtgctcgccgacgaatcatccaagctcgtttcgctgcagatctgccatgacgaagtcggagaagggagatctgcaaccgttgaagtcaaagatgggaggagaagaagtgggtgcccaaagattttttttttttttttggtatctgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

151

Amino Acids

16.96

Weight (kDa)

9.33

Isoelectric Point (pI)

78.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 419
AccII CGCG 1 cut(s) 287
AciI CCGC 4 cut(s) 159, 214, 287, 290
AclWI GGATC 1 cut(s) 246
AcoI YGGCCR 1 cut(s) 291
AcuI CTGAAG 1 cut(s) 36
AfiI CCNNNNNNNGG 1 cut(s) 286
AgsI TTSAA 2 cut(s) 115, 391
AjnI CCWGG 1 cut(s) 293
AluBI AGCT 5 cut(s) 32, 44, 87, 209, 333
AluI AGCT 5 cut(s) 32, 44, 87, 209, 333
Alw21I GWGCWC 4 cut(s) 46, 199, 231, 314
Alw26I GTCTC 2 cut(s) 99, 207
AlwI GGATC 1 cut(s) 246
AoxI GGCC 1 cut(s) 291
ApeKI GCWGC 1 cut(s) 342
AsuHPI GGTGA 2 cut(s) 156, 250
BaeGI GKGCMC 1 cut(s) 424
BanI GGYRCC 1 cut(s) 419
BanII GRGCYC 1 cut(s) 46
BbsI GAAGAC 1 cut(s) 24
Bbv12I GWGCWC 4 cut(s) 46, 199, 231, 314
BbvI GCAGC 1 cut(s) 329
BccI CCATC 4 cut(s) 230, 245, 263, 394
BciT130I CCWGG 1 cut(s) 295
BcoDI GTCTC 2 cut(s) 99, 207
BfmI CTRYAG 1 cut(s) 343
BglII AGATCT 2 cut(s) 347, 376
BisI GCNGC 3 cut(s) 288, 291, 343
BlsI GCNGC 3 cut(s) 289, 292, 344
Bme1390I CCNGG 1 cut(s) 295
BmiI GGNNCC 1 cut(s) 421
BmrFI CCNGG 1 cut(s) 295
BmsI GCATC 1 cut(s) 170
BpiI GAAGAC 1 cut(s) 24
BpmI CTGGAG 5 cut(s) 18, 30, 59, 175, 189
BsaXI ACNNNNNCTCC 2 cut(s) 399, 429
Bsc4I CCNNNNNNNGG 1 cut(s) 286
Bse1I ACTGG 2 cut(s) 35, 192
BseBI CCWGG 1 cut(s) 295
BseGI GGATG 1 cut(s) 325
BseLI CCNNNNNNNGG 1 cut(s) 286
BseNI ACTGG 2 cut(s) 35, 192
BseRI GAGGAG 1 cut(s) 420
BseSI GKGCMC 1 cut(s) 424
BseXI GCAGC 1 cut(s) 329
Bsh1236I CGCG 1 cut(s) 287
BshFI GGCC 1 cut(s) 293
BshNI GGYRCC 1 cut(s) 419
BsiHKAI GWGCWC 4 cut(s) 46, 199, 231, 314
BslI CCNNNNNNNGG 1 cut(s) 286
BsmAI GTCTC 2 cut(s) 99, 207
BsmBI CGTCTC 1 cut(s) 99
BsnI GGCC 1 cut(s) 293
Bsp1286I GDGCHC 5 cut(s) 46, 199, 231, 314, 424
Bsp143I GATC 4 cut(s) 251, 282, 347, 376
BspACI CCGC 4 cut(s) 159, 214, 287, 290
BspANI GGCC 1 cut(s) 293
BspFNI CGCG 1 cut(s) 287
BspLI GGNNCC 1 cut(s) 421
BspMAI CTGCAG 1 cut(s) 347
BspPI GGATC 1 cut(s) 246
BspT107I GGYRCC 1 cut(s) 419
BsrI ACTGG 2 cut(s) 35, 192
BssMI GATC 4 cut(s) 251, 282, 347, 376
Bst2UI CCWGG 1 cut(s) 295
Bst4CI ACNGT 3 cut(s) 155, 233, 387
BstC8I GCNNGC 1 cut(s) 314
BstF5I GGATG 1 cut(s) 325
BstFNI CGCG 1 cut(s) 287
BstKTI GATC 4 cut(s) 254, 285, 350, 379
BstMAI GTCTC 2 cut(s) 99, 207
BstMBI GATC 4 cut(s) 251, 282, 347, 376
BstMWI GCNNNNNNNGC 1 cut(s) 339
BstNI CCWGG 1 cut(s) 295
BstSCI CCNGG 1 cut(s) 293
BstSFI CTRYAG 1 cut(s) 343
BstSLI GKGCMC 1 cut(s) 424
BstUI CGCG 1 cut(s) 287
BstV1I GCAGC 1 cut(s) 329
BstV2I GAAGAC 1 cut(s) 24
BstX2I RGATCY 2 cut(s) 347, 376
BstYI RGATCY 2 cut(s) 347, 376
BsuRI GGCC 1 cut(s) 293
BtsCI GGATG 1 cut(s) 325
BtsIMutI CAGTG 1 cut(s) 199
Cac8I GCNNGC 1 cut(s) 314
CseI GACGC 1 cut(s) 178
CviAII CATG 1 cut(s) 355
DpnI GATC 4 cut(s) 253, 284, 349, 378
DpnII GATC 4 cut(s) 251, 282, 347, 376
EaeI YGGCCR 1 cut(s) 291
Ecl136II GAGCTC 1 cut(s) 44
Eco24I GRGCYC 1 cut(s) 46
Eco53kI GAGCTC 1 cut(s) 44
Eco57I CTGAAG 1 cut(s) 36
EcoICRI GAGCTC 1 cut(s) 44
EcoRII CCWGG 1 cut(s) 293
EcoT38I GRGCYC 1 cut(s) 46
Esp3I CGTCTC 1 cut(s) 99
FaeI CATG 1 cut(s) 358
FaiI YATR 4 cut(s) 135, 174, 308, 356
FatI CATG 1 cut(s) 354
Fnu4HI GCNGC 3 cut(s) 288, 291, 343
FokI GGATG 1 cut(s) 312
FriOI GRGCYC 1 cut(s) 46
Fsp4HI GCNGC 3 cut(s) 288, 291, 343
GluI GCNGC 3 cut(s) 288, 291, 343
GsuI CTGGAG 5 cut(s) 18, 30, 59, 175, 189
HaeIII GGCC 1 cut(s) 293
HgaI GACGC 1 cut(s) 178
Hin1II CATG 1 cut(s) 358
HinfI GANTC 2 cut(s) 72, 322
HphI GGTGA 2 cut(s) 156, 250
Hpy188I TCNGA 4 cut(s) 41, 64, 71, 367
Hpy188III TCNNGA 1 cut(s) 76
Hpy99I CGWCG 5 cut(s) 26, 64, 103, 172, 322
HpyAV CCTTC 1 cut(s) 364
HpyCH4III ACNGT 3 cut(s) 155, 233, 387
HpyCH4IV ACGT 1 cut(s) 59
HpyCH4V TGCA 3 cut(s) 4, 345, 382
HpyF10VI GCNNNNNNNGC 1 cut(s) 339
HpySE526I ACGT 1 cut(s) 59
Hsp92II CATG 1 cut(s) 358
Kzo9I GATC 4 cut(s) 251, 282, 347, 376
LmnI GCTCC 3 cut(s) 37, 41, 49
Lsp1109I GCAGC 1 cut(s) 329
LweI GCATC 1 cut(s) 170
MaeII ACGT 1 cut(s) 59
MalI GATC 4 cut(s) 253, 284, 349, 378
MboI GATC 4 cut(s) 251, 282, 347, 376
MboII GAAGA 5 cut(s) 29, 38, 283, 310, 422
MflI RGATCY 2 cut(s) 347, 376
MhlI GDGCHC 5 cut(s) 46, 199, 231, 314, 424
MlyI GAGTC 1 cut(s) 66
MmeI TCCRAC 5 cut(s) 19, 33, 42, 80, 345
MnlI CCTC 2 cut(s) 199, 398
MspR9I CCNGG 1 cut(s) 295
MvaI CCWGG 1 cut(s) 295
MvnI CGCG 1 cut(s) 287
MwoI GCNNNNNNNGC 1 cut(s) 339
NdeII GATC 4 cut(s) 251, 282, 347, 376
NlaIII CATG 1 cut(s) 358
NlaIV GGNNCC 1 cut(s) 421
PcsI WCGNNNNNNNCGW 1 cut(s) 98
PfeI GAWTC 1 cut(s) 322
PflFI GACNNNGTC 1 cut(s) 361
PkrI GCNGC 3 cut(s) 289, 292, 344
PleI GAGTC 1 cut(s) 66
PpsI GAGTC 1 cut(s) 66
Psp124BI GAGCTC 1 cut(s) 46
Psp6I CCWGG 1 cut(s) 293
PspGI CCWGG 1 cut(s) 293
PspN4I GGNNCC 1 cut(s) 421
PstI CTGCAG 1 cut(s) 347
PsuI RGATCY 2 cut(s) 347, 376
PsyI GACNNNGTC 1 cut(s) 361
SacI GAGCTC 1 cut(s) 46
SatI GCNGC 3 cut(s) 288, 291, 343
Sau3AI GATC 4 cut(s) 251, 282, 347, 376
SchI GAGTC 1 cut(s) 66
ScrFI CCNGG 1 cut(s) 295
SduI GDGCHC 5 cut(s) 46, 199, 231, 314, 424
SetI ASST 7 cut(s) 34, 46, 62, 89, 191, 211, 335
SfaNI GCATC 1 cut(s) 170
SfcI CTRYAG 1 cut(s) 343
SsiI CCGC 4 cut(s) 159, 214, 287, 290
SstI GAGCTC 1 cut(s) 46
StyD4I CCNGG 1 cut(s) 293
TaaI ACNGT 3 cut(s) 155, 233, 387
TaiI ACGT 1 cut(s) 62
TaqI TCGA 1 cut(s) 225
TauI GCSGC 2 cut(s) 290, 293
TfiI GAWTC 1 cut(s) 322
TscAI CASTG 1 cut(s) 199
TseI GCWGC 1 cut(s) 342
TspGWI ACGGA 1 cut(s) 87
TspRI CASTG 1 cut(s) 199
Tth111I GACNNNGTC 1 cut(s) 361
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.