Rmu_sc0005996.1_g000009

Serine-rich protein-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005996.1
OG0020732
Physical Location & Seq
Forward (+)
57731 .. 58744
1014 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005996.1_g000009.1.cds

Sequence Viewer

Length: 612 bp
atgatctccacctccggtctgtctctctctctctccgatcgccgcgccagagatgcagccaaccctgaagacgacgaagaagctccagtcggagccccagccactccaacgtcggaaatcagactccagaccaccagcttctcgtctccgtcgtctgcctttttcaacaaccaccaggaccaccatagccaataccaccaccaccgttccgcttcaccgacgcatatcaatctctacacctccagtgctctgtctccagctttccgcttctccatcgagcaccgttccatctccccaaaccgatccatcaccatttccaagaagaacggccagatcgcggcggccaggaagacgtgtatgtgctcgccgaagaatcatccaagctcgtttcgctgcagatctgccatgacgaagtcggagaagggagatatgcaactgtcgaagtcaaagatgggaggagaagaagaaacgtcggaatctggacaccagtccggtagccggattcctgattccgatgaccagtcacctgttgcaggattccagtcaccggagtcgggccccggccactggtcaccagaggctggcaaggtggaggatgacttctccctctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

203

Amino Acids

21.99

Weight (kDa)

6.4

Isoelectric Point (pI)

79.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 581
AccII CGCG 2 cut(s) 45, 338
AciI CCGC 5 cut(s) 43, 210, 265, 338, 341
AclWI GGATC 1 cut(s) 297
AcoI YGGCCR 3 cut(s) 328, 342, 562
AcuI CTGAAG 1 cut(s) 87
AfiI CCNNNNNNNGG 7 cut(s) 337, 498, 533, 547, 554, 567, 581
AflIII ACRYGT 1 cut(s) 353
AgsI TTSAA 1 cut(s) 166
AjiI CACGTC 1 cut(s) 354
AjnI CCWGG 2 cut(s) 174, 344
AluBI AGCT 4 cut(s) 83, 138, 260, 384
AluI AGCT 4 cut(s) 83, 138, 260, 384
Alw21I GWGCWC 3 cut(s) 250, 282, 365
Alw26I GTCTC 3 cut(s) 27, 150, 258
AlwI GGATC 1 cut(s) 297
AlwNI CAGNNNCTG 1 cut(s) 581
AoxI GGCC 4 cut(s) 328, 342, 556, 562
ApaI GGGCCC 1 cut(s) 560
ApeKI GCWGC 2 cut(s) 56, 393
AspLEI GCGC 1 cut(s) 47
AspS9I GGNCC 3 cut(s) 178, 556, 557
AsuC2I CCSGG 1 cut(s) 561
AsuHPI GGTGA 5 cut(s) 207, 301, 516, 537, 564
AvaII GGWCC 1 cut(s) 178
BaeGI GKGCMC 1 cut(s) 560
BanII GRGCYC 2 cut(s) 97, 560
BbsI GAAGAC 2 cut(s) 75, 356
Bbv12I GWGCWC 3 cut(s) 250, 282, 365
BbvI GCAGC 2 cut(s) 68, 380
BccI CCATC 4 cut(s) 281, 296, 314, 445
BceAI ACGGC 1 cut(s) 343
BciT130I CCWGG 2 cut(s) 176, 346
BcnI CCSGG 1 cut(s) 561
BcoDI GTCTC 3 cut(s) 27, 150, 258
BfmI CTRYAG 1 cut(s) 394
BglII AGATCT 1 cut(s) 398
BisI GCNGC 5 cut(s) 43, 57, 339, 342, 394
BlsI GCNGC 5 cut(s) 44, 58, 340, 343, 395
Bme1390I CCNGG 3 cut(s) 176, 346, 561
Bme18I GGWCC 1 cut(s) 178
BmgBI CACGTC 1 cut(s) 354
BmgT120I GGNCC 3 cut(s) 178, 556, 557
BmiI GGNNCC 3 cut(s) 94, 558, 559
BmrFI CCNGG 3 cut(s) 176, 346, 561
BmsI GCATC 1 cut(s) 43
BoxI GACNNNNGTC 1 cut(s) 487
BpiI GAAGAC 2 cut(s) 75, 356
BpmI CTGGAG 4 cut(s) 69, 110, 226, 240
BpuMI CCSGG 1 cut(s) 561
BsaJI CCNNGG 1 cut(s) 559
BsaWI WCCGGW 3 cut(s) 14, 491, 547
Bsc4I CCNNNNNNNGG 7 cut(s) 337, 498, 533, 547, 554, 567, 581
Bse1I ACTGG 6 cut(s) 86, 243, 487, 520, 541, 572
BseBI CCWGG 2 cut(s) 176, 346
BseDI CCNNGG 1 cut(s) 559
BseGI GGATG 2 cut(s) 376, 601
BseLI CCNNNNNNNGG 7 cut(s) 337, 498, 533, 547, 554, 567, 581
BseNI ACTGG 6 cut(s) 86, 243, 487, 520, 541, 572
BseRI GAGGAG 1 cut(s) 471
BseSI GKGCMC 1 cut(s) 560
BseXI GCAGC 2 cut(s) 68, 380
BseYI CCCAGC 1 cut(s) 97
Bsh1236I CGCG 2 cut(s) 45, 338
Bsh1285I CGRYCG 1 cut(s) 40
BshFI GGCC 4 cut(s) 330, 344, 558, 564
BsiEI CGRYCG 1 cut(s) 40
BsiHKAI GWGCWC 3 cut(s) 250, 282, 365
BsiSI CCGG 5 cut(s) 15, 492, 499, 548, 561
BslI CCNNNNNNNGG 7 cut(s) 337, 498, 533, 547, 554, 567, 581
BsmAI GTCTC 3 cut(s) 27, 150, 258
BsmBI CGTCTC 1 cut(s) 150
BsnI GGCC 4 cut(s) 330, 344, 558, 564
Bsp120I GGGCCC 1 cut(s) 556
Bsp1286I GDGCHC 5 cut(s) 97, 250, 282, 365, 560
Bsp143I GATC 5 cut(s) 3, 37, 302, 333, 398
BspACI CCGC 5 cut(s) 43, 210, 265, 338, 341
BspANI GGCC 4 cut(s) 330, 344, 558, 564
BspFNI CGCG 2 cut(s) 45, 338
BspLI GGNNCC 3 cut(s) 94, 558, 559
BspMAI CTGCAG 1 cut(s) 398
BspPI GGATC 1 cut(s) 297
BsrI ACTGG 6 cut(s) 86, 243, 487, 520, 541, 572
BssECI CCNNGG 1 cut(s) 559
BssMI GATC 5 cut(s) 3, 37, 302, 333, 398
Bst2UI CCWGG 2 cut(s) 176, 346
Bst4CI ACNGT 3 cut(s) 206, 284, 438
BstC8I GCNNGC 2 cut(s) 365, 583
BstEII GGTNACC 1 cut(s) 570
BstENI CCTNNNNNAGG 1 cut(s) 531
BstF5I GGATG 2 cut(s) 376, 601
BstFNI CGCG 2 cut(s) 45, 338
BstHHI GCGC 1 cut(s) 47
BstKTI GATC 5 cut(s) 6, 40, 305, 336, 401
BstMAI GTCTC 3 cut(s) 27, 150, 258
BstMBI GATC 5 cut(s) 3, 37, 302, 333, 398
BstMCI CGRYCG 1 cut(s) 40
BstMWI GCNNNNNNNGC 2 cut(s) 53, 390
BstNI CCWGG 2 cut(s) 176, 346
BstPAI GACNNNNGTC 1 cut(s) 487
BstPI GGTNACC 1 cut(s) 570
BstSCI CCNGG 3 cut(s) 174, 344, 559
BstSFI CTRYAG 1 cut(s) 394
BstSLI GKGCMC 1 cut(s) 560
BstUI CGCG 2 cut(s) 45, 338
BstV1I GCAGC 2 cut(s) 68, 380
BstV2I GAAGAC 2 cut(s) 75, 356
BstX2I RGATCY 1 cut(s) 398
BstYI RGATCY 1 cut(s) 398
BsuRI GGCC 4 cut(s) 330, 344, 558, 564
BtrI CACGTC 1 cut(s) 354
BtsCI GGATG 2 cut(s) 376, 601
BtsIMutI CAGTG 2 cut(s) 250, 565
Cac8I GCNNGC 2 cut(s) 365, 583
CaiI CAGNNNCTG 1 cut(s) 581
CfoI GCGC 1 cut(s) 47
Cfr13I GGNCC 3 cut(s) 178, 556, 557
CseI GACGC 1 cut(s) 229
CviAII CATG 1 cut(s) 406
DpnI GATC 5 cut(s) 5, 39, 304, 335, 400
DpnII GATC 5 cut(s) 3, 37, 302, 333, 398
EaeI YGGCCR 3 cut(s) 328, 342, 562
Eco24I GRGCYC 2 cut(s) 97, 560
Eco47I GGWCC 1 cut(s) 178
Eco57I CTGAAG 1 cut(s) 87
Eco91I GGTNACC 1 cut(s) 570
EcoNI CCTNNNNNAGG 1 cut(s) 531
EcoO109I RGGNCCY 1 cut(s) 557
EcoO65I GGTNACC 1 cut(s) 570
EcoRII CCWGG 2 cut(s) 174, 344
EcoT38I GRGCYC 2 cut(s) 97, 560
Esp3I CGTCTC 1 cut(s) 150
FaeI CATG 1 cut(s) 409
FaiI YATR 5 cut(s) 186, 225, 359, 407, 431
FatI CATG 1 cut(s) 405
Fnu4HI GCNGC 5 cut(s) 43, 57, 339, 342, 394
FokI GGATG 2 cut(s) 363, 608
FriOI GRGCYC 2 cut(s) 97, 560
Fsp4HI GCNGC 5 cut(s) 43, 57, 339, 342, 394
GlaI GCGC 1 cut(s) 46
GluI GCNGC 5 cut(s) 43, 57, 339, 342, 394
GsaI CCCAGC 1 cut(s) 101
GsuI CTGGAG 4 cut(s) 69, 110, 226, 240
HaeIII GGCC 4 cut(s) 330, 344, 558, 564
HapII CCGG 5 cut(s) 15, 492, 499, 548, 561
HgaI GACGC 1 cut(s) 229
HhaI GCGC 1 cut(s) 47
Hin1II CATG 1 cut(s) 409
Hin6I GCGC 1 cut(s) 45
HinP1I GCGC 1 cut(s) 45
HinfI GANTC 7 cut(s) 123, 373, 476, 502, 509, 537, 551
HpaII CCGG 5 cut(s) 15, 492, 499, 548, 561
HphI GGTGA 5 cut(s) 207, 301, 516, 537, 564
Hpy188I TCNGA 7 cut(s) 37, 92, 115, 122, 418, 475, 514
Hpy188III TCNNGA 3 cut(s) 127, 480, 506
Hpy99I CGWCG 5 cut(s) 77, 115, 154, 223, 475
HpyAV CCTTC 1 cut(s) 415
HpyCH4III ACNGT 3 cut(s) 206, 284, 438
HpyCH4IV ACGT 3 cut(s) 110, 353, 470
HpyCH4V TGCA 4 cut(s) 56, 396, 433, 533
HpyF10VI GCNNNNNNNGC 2 cut(s) 53, 390
HpySE526I ACGT 3 cut(s) 110, 353, 470
Hsp92II CATG 1 cut(s) 409
HspAI GCGC 1 cut(s) 45
Kzo9I GATC 5 cut(s) 3, 37, 302, 333, 398
LmnI GCTCC 2 cut(s) 88, 92
Lsp1109I GCAGC 2 cut(s) 68, 380
LweI GCATC 1 cut(s) 43
MaeII ACGT 3 cut(s) 110, 353, 470
MaeIII GTNAC 3 cut(s) 522, 543, 570
MalI GATC 5 cut(s) 5, 39, 304, 335, 400
MboI GATC 5 cut(s) 3, 37, 302, 333, 398
MboII GAAGA 7 cut(s) 80, 89, 334, 361, 382, 473, 476
MflI RGATCY 1 cut(s) 398
MhlI GDGCHC 5 cut(s) 97, 250, 282, 365, 560
MlyI GAGTC 2 cut(s) 117, 560
MmeI TCCRAC 5 cut(s) 70, 93, 131, 396, 453
MnlI CCTC 5 cut(s) 22, 250, 449, 571, 586
MspI CCGG 5 cut(s) 15, 492, 499, 548, 561
MspR9I CCNGG 3 cut(s) 176, 346, 561
MvaI CCWGG 2 cut(s) 176, 346
MvnI CGCG 2 cut(s) 45, 338
MwoI GCNNNNNNNGC 2 cut(s) 53, 390
NciI CCSGG 1 cut(s) 561
NdeII GATC 5 cut(s) 3, 37, 302, 333, 398
NlaIII CATG 1 cut(s) 409
NlaIV GGNNCC 3 cut(s) 94, 558, 559
NmuCI GTSAC 3 cut(s) 522, 543, 570
PcsI WCGNNNNNNNCGW 1 cut(s) 149
PfeI GAWTC 5 cut(s) 373, 476, 502, 509, 537
PflFI GACNNNGTC 1 cut(s) 412
PflMI CCANNNNNTGG 1 cut(s) 581
PkrI GCNGC 5 cut(s) 44, 58, 340, 343, 395
Ple19I CGATCG 1 cut(s) 40
PleI GAGTC 2 cut(s) 117, 559
PpsI GAGTC 2 cut(s) 117, 559
PshAI GACNNNNGTC 1 cut(s) 487
Psp6I CCWGG 2 cut(s) 174, 344
PspEI GGTNACC 1 cut(s) 570
PspFI CCCAGC 1 cut(s) 97
PspGI CCWGG 2 cut(s) 174, 344
PspN4I GGNNCC 3 cut(s) 94, 558, 559
PspOMI GGGCCC 1 cut(s) 556
PspPI GGNCC 3 cut(s) 178, 556, 557
PstI CTGCAG 1 cut(s) 398
PstNI CAGNNNCTG 1 cut(s) 581
PsuI RGATCY 1 cut(s) 398
PsyI GACNNNGTC 1 cut(s) 412
PvuI CGATCG 1 cut(s) 40
SatI GCNGC 5 cut(s) 43, 57, 339, 342, 394
Sau3AI GATC 5 cut(s) 3, 37, 302, 333, 398
Sau96I GGNCC 3 cut(s) 178, 556, 557
SchI GAGTC 2 cut(s) 117, 560
ScrFI CCNGG 3 cut(s) 176, 346, 561
SduI GDGCHC 5 cut(s) 97, 250, 282, 365, 560
SfaNI GCATC 1 cut(s) 43
SfcI CTRYAG 1 cut(s) 394
SinI GGWCC 1 cut(s) 178
SsiI CCGC 5 cut(s) 43, 210, 265, 338, 341
StyD4I CCNGG 3 cut(s) 174, 344, 559
TaaI ACNGT 3 cut(s) 206, 284, 438
TaiI ACGT 3 cut(s) 113, 356, 473
TaqI TCGA 2 cut(s) 276, 440
TauI GCSGC 3 cut(s) 45, 341, 344
TfiI GAWTC 5 cut(s) 373, 476, 502, 509, 537
TscAI CASTG 2 cut(s) 250, 572
TseFI GTSAC 3 cut(s) 522, 543, 570
TseI GCWGC 2 cut(s) 56, 393
Tsp45I GTSAC 3 cut(s) 522, 543, 570
TspGWI ACGGA 1 cut(s) 138
TspRI CASTG 2 cut(s) 250, 572
Tth111I GACNNNGTC 1 cut(s) 412
Van91I CCANNNNNTGG 1 cut(s) 581
VpaK11BI GGWCC 1 cut(s) 178
XagI CCTNNNNNAGG 1 cut(s) 531
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.