Rmu_sc0014893.1_g000006

Serine-rich protein-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0014893.1
OG0020732
Physical Location & Seq
Forward (+)
9052 .. 10602
1551 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0014893.1_g000006.1.cds

Sequence Viewer

Length: 549 bp
atgcagccaaccctgaagaagacgaagaagctccagtcggaaatcagactccagacccccagcttctcgtctccgtcgtctgcctttttcaacaaccaacaggaccaccatagccactaccaccacaccgactaccaccaccaccgttccgcttcaccaacgcatatcaatctctacacctctagtgctctgtctcttgctttccgcttctccatcgagcaccgttccatctccccaaaccgatccatcaccatttccaagaagaatggccagatcgcggcggccaggaagacttgtatgtgctcgccgacgaatcatccaagctcgtttcgctgcagatctgccatgacgaagtcggagaagggagatctgcaaccgtcgaagtcaaagatgggaggagaagaagaaacgtcggaatccggacaccagtctggtagccggattcctgattctgatgaccggtcgccggattccggtcaccggagtcggcccccgaccactggtcaccagaggctggcaaggtggatgatgacttctccctctaagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

182

Amino Acids

20.41

Weight (kDa)

10.07

Isoelectric Point (pI)

87.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 514
AccII CGCG 1 cut(s) 278
AccIII TCCGGA 1 cut(s) 419
AciI CCGC 4 cut(s) 150, 205, 278, 281
AclWI GGATC 1 cut(s) 237
AcoI YGGCCR 2 cut(s) 268, 282
AcuI CTGAAG 1 cut(s) 35
AfiI CCNNNNNNNGG 6 cut(s) 277, 466, 473, 480, 500, 514
AgeI ACCGGT 1 cut(s) 459
AgsI TTSAA 1 cut(s) 91
AhdI GACNNNNNGTC 1 cut(s) 501
AjnI CCWGG 1 cut(s) 284
AluBI AGCT 3 cut(s) 31, 63, 324
AluI AGCT 3 cut(s) 31, 63, 324
Alw21I GWGCWC 3 cut(s) 190, 222, 305
Alw26I GTCTC 2 cut(s) 75, 198
AlwI GGATC 1 cut(s) 237
AlwNI CAGNNNCTG 1 cut(s) 514
Aor13HI TCCGGA 1 cut(s) 419
AoxI GGCC 3 cut(s) 268, 282, 488
ApeKI GCWGC 2 cut(s) 4, 333
AsiGI ACCGGT 1 cut(s) 459
AspS9I GGNCC 2 cut(s) 103, 489
AsuHPI GGTGA 4 cut(s) 147, 241, 470, 497
AvaII GGWCC 1 cut(s) 103
BalI TGGCCA 1 cut(s) 270
BbsI GAAGAC 2 cut(s) 26, 296
Bbv12I GWGCWC 3 cut(s) 190, 222, 305
BbvI GCAGC 2 cut(s) 16, 320
BccI CCATC 4 cut(s) 221, 236, 254, 385
BciT130I CCWGG 1 cut(s) 286
BcoDI GTCTC 2 cut(s) 75, 198
BfaI CTAG 1 cut(s) 183
BfmI CTRYAG 1 cut(s) 334
BglII AGATCT 2 cut(s) 338, 367
BisI GCNGC 4 cut(s) 5, 279, 282, 334
BlsI GCNGC 4 cut(s) 6, 280, 283, 335
Bme1390I CCNGG 1 cut(s) 286
Bme18I GGWCC 1 cut(s) 103
BmeRI GACNNNNNGTC 1 cut(s) 501
BmgT120I GGNCC 2 cut(s) 103, 489
BmiI GGNNCC 1 cut(s) 491
BmrFI CCNGG 1 cut(s) 286
BoxI GACNNNNGTC 1 cut(s) 427
BpiI GAAGAC 2 cut(s) 26, 296
BpmI CTGGAG 2 cut(s) 17, 35
BsaWI WCCGGW 4 cut(s) 419, 459, 473, 480
Bsc4I CCNNNNNNNGG 6 cut(s) 277, 466, 473, 480, 500, 514
Bse118I RCCGGY 1 cut(s) 459
Bse1I ACTGG 3 cut(s) 34, 427, 505
BseAI TCCGGA 1 cut(s) 419
BseBI CCWGG 1 cut(s) 286
BseGI GGATG 2 cut(s) 316, 531
BseLI CCNNNNNNNGG 6 cut(s) 277, 466, 473, 480, 500, 514
BseNI ACTGG 3 cut(s) 34, 427, 505
BseRI GAGGAG 1 cut(s) 411
BseXI GCAGC 2 cut(s) 16, 320
BseYI CCCAGC 1 cut(s) 59
Bsh1236I CGCG 1 cut(s) 278
Bsh1285I CGRYCG 1 cut(s) 464
BshFI GGCC 3 cut(s) 270, 284, 490
BshTI ACCGGT 1 cut(s) 459
BsiEI CGRYCG 1 cut(s) 464
BsiHKAI GWGCWC 3 cut(s) 190, 222, 305
BsiSI CCGG 6 cut(s) 420, 439, 460, 467, 474, 481
BslI CCNNNNNNNGG 6 cut(s) 277, 466, 473, 480, 500, 514
BsmAI GTCTC 2 cut(s) 75, 198
BsmBI CGTCTC 1 cut(s) 75
BsnI GGCC 3 cut(s) 270, 284, 490
Bsp1286I GDGCHC 3 cut(s) 190, 222, 305
Bsp13I TCCGGA 1 cut(s) 419
Bsp143I GATC 4 cut(s) 242, 273, 338, 367
BspACI CCGC 4 cut(s) 150, 205, 278, 281
BspANI GGCC 3 cut(s) 270, 284, 490
BspEI TCCGGA 1 cut(s) 419
BspFNI CGCG 1 cut(s) 278
BspLI GGNNCC 1 cut(s) 491
BspMAI CTGCAG 1 cut(s) 338
BspPI GGATC 1 cut(s) 237
BsrFI RCCGGY 1 cut(s) 459
BsrI ACTGG 3 cut(s) 34, 427, 505
BssAI RCCGGY 1 cut(s) 459
BssMI GATC 4 cut(s) 242, 273, 338, 367
Bst2UI CCWGG 1 cut(s) 286
Bst4CI ACNGT 3 cut(s) 146, 224, 378
BstC8I GCNNGC 2 cut(s) 305, 516
BstDEI CTNAG 1 cut(s) 543
BstEII GGTNACC 2 cut(s) 476, 503
BstF5I GGATG 2 cut(s) 316, 531
BstFNI CGCG 1 cut(s) 278
BstKTI GATC 4 cut(s) 245, 276, 341, 370
BstMAI GTCTC 2 cut(s) 75, 198
BstMBI GATC 4 cut(s) 242, 273, 338, 367
BstMCI CGRYCG 1 cut(s) 464
BstMWI GCNNNNNNNGC 1 cut(s) 330
BstNI CCWGG 1 cut(s) 286
BstPAI GACNNNNGTC 1 cut(s) 427
BstPI GGTNACC 2 cut(s) 476, 503
BstSCI CCNGG 1 cut(s) 284
BstSFI CTRYAG 1 cut(s) 334
BstUI CGCG 1 cut(s) 278
BstV1I GCAGC 2 cut(s) 16, 320
BstV2I GAAGAC 2 cut(s) 26, 296
BstX2I RGATCY 2 cut(s) 338, 367
BstYI RGATCY 2 cut(s) 338, 367
BsuRI GGCC 3 cut(s) 270, 284, 490
BtsCI GGATG 2 cut(s) 316, 531
BtsIMutI CAGTG 1 cut(s) 498
Cac8I GCNNGC 2 cut(s) 305, 516
CaiI CAGNNNCTG 1 cut(s) 514
Cfr10I RCCGGY 1 cut(s) 459
Cfr13I GGNCC 2 cut(s) 103, 489
CspAI ACCGGT 1 cut(s) 459
CviAII CATG 1 cut(s) 346
DdeI CTNAG 1 cut(s) 543
DpnI GATC 4 cut(s) 244, 275, 340, 369
DpnII GATC 4 cut(s) 242, 273, 338, 367
DriI GACNNNNNGTC 1 cut(s) 501
EaeI YGGCCR 2 cut(s) 268, 282
Eam1105I GACNNNNNGTC 1 cut(s) 501
Eco47I GGWCC 1 cut(s) 103
Eco57I CTGAAG 1 cut(s) 35
Eco91I GGTNACC 2 cut(s) 476, 503
EcoO65I GGTNACC 2 cut(s) 476, 503
EcoRII CCWGG 1 cut(s) 284
Esp3I CGTCTC 1 cut(s) 75
FaeI CATG 1 cut(s) 349
FaiI YATR 4 cut(s) 111, 165, 299, 347
FatI CATG 1 cut(s) 345
Fnu4HI GCNGC 4 cut(s) 5, 279, 282, 334
FokI GGATG 2 cut(s) 303, 538
Fsp4HI GCNGC 4 cut(s) 5, 279, 282, 334
FspBI CTAG 1 cut(s) 183
GluI GCNGC 4 cut(s) 5, 279, 282, 334
GsaI CCCAGC 1 cut(s) 63
GsuI CTGGAG 2 cut(s) 17, 35
HaeIII GGCC 3 cut(s) 270, 284, 490
HapII CCGG 6 cut(s) 420, 439, 460, 467, 474, 481
Hin1II CATG 1 cut(s) 349
HinfI GANTC 7 cut(s) 48, 313, 416, 442, 449, 470, 484
HpaII CCGG 6 cut(s) 420, 439, 460, 467, 474, 481
HphI GGTGA 4 cut(s) 147, 241, 470, 497
Hpy188I TCNGA 5 cut(s) 40, 47, 358, 415, 454
Hpy188III TCNNGA 3 cut(s) 52, 420, 446
Hpy99I CGWCG 4 cut(s) 79, 313, 382, 415
HpyAV CCTTC 1 cut(s) 355
HpyCH4III ACNGT 3 cut(s) 146, 224, 378
HpyCH4IV ACGT 1 cut(s) 410
HpyCH4V TGCA 3 cut(s) 4, 336, 373
HpyF10VI GCNNNNNNNGC 1 cut(s) 330
HpyF3I CTNAG 1 cut(s) 543
HpySE526I ACGT 1 cut(s) 410
Hsp92II CATG 1 cut(s) 349
Kpn2I TCCGGA 1 cut(s) 419
Kzo9I GATC 4 cut(s) 242, 273, 338, 367
LmnI GCTCC 1 cut(s) 36
Lsp1109I GCAGC 2 cut(s) 16, 320
MaeI CTAG 1 cut(s) 183
MaeII ACGT 1 cut(s) 410
MaeIII GTNAC 2 cut(s) 476, 503
MalI GATC 4 cut(s) 244, 275, 340, 369
MboI GATC 4 cut(s) 242, 273, 338, 367
MboII GAAGA 7 cut(s) 28, 31, 37, 274, 301, 413, 416
MflI RGATCY 2 cut(s) 338, 367
MhlI GDGCHC 3 cut(s) 190, 222, 305
MlsI TGGCCA 1 cut(s) 270
MluNI TGGCCA 1 cut(s) 270
MlyI GAGTC 2 cut(s) 42, 493
MmeI TCCRAC 3 cut(s) 18, 336, 393
MnlI CCTC 3 cut(s) 190, 389, 504
Mox20I TGGCCA 1 cut(s) 270
MroI TCCGGA 1 cut(s) 419
MscI TGGCCA 1 cut(s) 270
Msp20I TGGCCA 1 cut(s) 270
MspI CCGG 6 cut(s) 420, 439, 460, 467, 474, 481
MspR9I CCNGG 1 cut(s) 286
MvaI CCWGG 1 cut(s) 286
MvnI CGCG 1 cut(s) 278
MwoI GCNNNNNNNGC 1 cut(s) 330
NdeII GATC 4 cut(s) 242, 273, 338, 367
NlaIII CATG 1 cut(s) 349
NlaIV GGNNCC 1 cut(s) 491
NmuCI GTSAC 2 cut(s) 476, 503
PcsI WCGNNNNNNNCGW 1 cut(s) 74
PfeI GAWTC 5 cut(s) 313, 416, 442, 449, 470
PflFI GACNNNGTC 1 cut(s) 352
PflMI CCANNNNNTGG 1 cut(s) 514
PinAI ACCGGT 1 cut(s) 459
PkrI GCNGC 4 cut(s) 6, 280, 283, 335
PleI GAGTC 2 cut(s) 42, 492
PpsI GAGTC 2 cut(s) 42, 492
PshAI GACNNNNGTC 1 cut(s) 427
Psp6I CCWGG 1 cut(s) 284
PspEI GGTNACC 2 cut(s) 476, 503
PspFI CCCAGC 1 cut(s) 59
PspGI CCWGG 1 cut(s) 284
PspN4I GGNNCC 1 cut(s) 491
PspPI GGNCC 2 cut(s) 103, 489
PstI CTGCAG 1 cut(s) 338
PstNI CAGNNNCTG 1 cut(s) 514
PsuI RGATCY 2 cut(s) 338, 367
PsyI GACNNNGTC 1 cut(s) 352
SatI GCNGC 4 cut(s) 5, 279, 282, 334
Sau3AI GATC 4 cut(s) 242, 273, 338, 367
Sau96I GGNCC 2 cut(s) 103, 489
SchI GAGTC 2 cut(s) 42, 493
ScrFI CCNGG 1 cut(s) 286
SduI GDGCHC 3 cut(s) 190, 222, 305
SetI ASST 6 cut(s) 33, 65, 182, 326, 413, 524
SfcI CTRYAG 1 cut(s) 334
SinI GGWCC 1 cut(s) 103
SsiI CCGC 4 cut(s) 150, 205, 278, 281
SspMI CTAG 1 cut(s) 183
StyD4I CCNGG 1 cut(s) 284
TaaI ACNGT 3 cut(s) 146, 224, 378
TaiI ACGT 1 cut(s) 413
TaqI TCGA 2 cut(s) 216, 380
TauI GCSGC 2 cut(s) 281, 284
TfiI GAWTC 5 cut(s) 313, 416, 442, 449, 470
TscAI CASTG 1 cut(s) 505
TseFI GTSAC 2 cut(s) 476, 503
TseI GCWGC 2 cut(s) 4, 333
Tsp45I GTSAC 2 cut(s) 476, 503
TspGWI ACGGA 1 cut(s) 63
TspRI CASTG 1 cut(s) 505
Tth111I GACNNNGTC 1 cut(s) 352
Van91I CCANNNNNTGG 1 cut(s) 514
VpaK11BI GGWCC 1 cut(s) 103
XspI CTAG 1 cut(s) 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.