Rmu_sc0002965.1_g000006

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002965.1
OG0020732
Physical Location & Seq
Reverse (-)
20676 .. 25336
4661 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002965.1_g000006.1.cds

Sequence Viewer

Length: 1143 bp
atgcagtccaaccctgaagacgacgaagaagctccagtcggagctccagccactccaacttcagaaatcaaactccagaccaccagcttctcatctccatcgtctgcctttttcaacaagcaccaggaccaccatagccactaccaccacaccgactaccaccaccaccgttccgcttcaccgacgcatatcaatctctacacctccagtgctctgtctccagctttctgcttgtccatcgagcacctttccatctccccaaatcgatccatcaccatttccaagaagaacgacccgatcgcggcggccaggaagacgtgtatgtgctcgccgacgaatcatccaagcttctttcgctgcagatctaccatgacgaagtcagagaagggagatctgcaaccgtcgaagtcaaagatgggaggaggagaagaagcacgagcacggcccggcacggtatgggctcgggccatgggccaggccaggcttaatgtttatgtaaatggcccggcacaagcccggcacgataataaatggacgttggaatccggacaccagtccggtagctggattcctgattccggtgaccggtcaccgattcaggtcacctgtcgccggattccgtttaagagggaacttcttcaccaacgccattctgagttagaggaggatcatattaatattgatgagaaggcaaaaactatcatgtcccttgacatagaagatcatatggccaaggtttatacacgtaaactattttatgaagttcaagaacattgtagaaagtttgacagtgaagggctcccatgtcaacatattttggcatatttgattaagatccaagatgttgataaattgcctattcagtacatcttgaagacatggactaaagctgcaagacagagagttgtgttagattctaatggaatggagataaaagataacaaagctttacttgcaaggaggactaaactatttcagcatgctacatatgcaattgataaggttatggtgagtgatgaggctacccagctctttatggaagcattggatgcttttttggagaatattaaaccattaattagtaatgaaagtggacaaagtgcagtaggtttcgagaccgagaccgagactgctactatttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

380

Amino Acids

42.89

Weight (kDa)

7.07

Isoelectric Point (pI)

60.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 302
AccIII TCCGGA 1 cut(s) 545
AciI CCGC 3 cut(s) 174, 302, 305
AclWI GGATC 3 cut(s) 261, 675, 829
AcoI YGGCCR 2 cut(s) 306, 729
AcuI CTGAAG 2 cut(s) 36, 45
AfaI GTAC 1 cut(s) 866
AfiI CCNNNNNNNGG 5 cut(s) 301, 564, 578, 585, 612
AflIII ACRYGT 2 cut(s) 317, 743
AgeI ACCGGT 1 cut(s) 585
AgsI TTSAA 3 cut(s) 115, 767, 874
AjiI CACGTC 1 cut(s) 318
AjnI CCWGG 4 cut(s) 123, 308, 474, 479
AluBI AGCT 9 cut(s) 32, 44, 87, 224, 348, 564, 890, 947, 1030
AluI AGCT 9 cut(s) 32, 44, 87, 224, 348, 564, 890, 947, 1030
Alw21I GWGCWC 5 cut(s) 46, 214, 246, 329, 442
Alw26I GTCTC 4 cut(s) 222, 1109, 1115, 1121
AlwI GGATC 3 cut(s) 261, 675, 829
Ama87I CYCGRG 1 cut(s) 462
Aor13HI TCCGGA 1 cut(s) 545
AoxI GGCC 7 cut(s) 306, 443, 465, 472, 477, 502, 729
ApeKI GCWGC 2 cut(s) 357, 890
AseI ATTAAT 2 cut(s) 675, 1076
AsiGI ACCGGT 1 cut(s) 585
Asp700I GAANNNNTTC 1 cut(s) 636
AspS9I GGNCC 5 cut(s) 127, 444, 465, 472, 503
AsuC2I CCSGG 3 cut(s) 447, 506, 517
AsuHPI GGTGA 7 cut(s) 171, 265, 582, 593, 595, 632, 1021
AvaI CYCGRG 1 cut(s) 462
AvaII GGWCC 1 cut(s) 127
BalI TGGCCA 1 cut(s) 731
BanII GRGCYC 3 cut(s) 46, 463, 801
BauI CACGAG 1 cut(s) 435
BbsI GAAGAC 3 cut(s) 24, 320, 881
Bbv12I GWGCWC 5 cut(s) 46, 214, 246, 329, 442
BbvI GCAGC 2 cut(s) 344, 877
BccI CCATC 5 cut(s) 106, 245, 260, 278, 409
BceAI ACGGC 1 cut(s) 458
BciT130I CCWGG 4 cut(s) 125, 310, 476, 481
BcnI CCSGG 3 cut(s) 447, 506, 517
BcoDI GTCTC 4 cut(s) 222, 1109, 1115, 1121
BfmI CTRYAG 1 cut(s) 358
BglII AGATCT 2 cut(s) 362, 391
BisI GCNGC 4 cut(s) 303, 306, 358, 891
BlsI GCNGC 4 cut(s) 304, 307, 359, 892
Bme1390I CCNGG 7 cut(s) 125, 310, 447, 476, 481, 506, 517
Bme18I GGWCC 1 cut(s) 127
BmeT110I CYCGRG 1 cut(s) 462
BmgBI CACGTC 1 cut(s) 318
BmgT120I GGNCC 5 cut(s) 127, 444, 465, 472, 503
BmiI GGNNCC 1 cut(s) 800
BmrFI CCNGG 7 cut(s) 125, 310, 447, 476, 481, 506, 517
BmsI GCATC 1 cut(s) 1039
BoxI GACNNNNGTC 1 cut(s) 553
BpiI GAAGAC 3 cut(s) 24, 320, 881
BpmI CTGGAG 5 cut(s) 18, 30, 59, 190, 204
BpuMI CCSGG 3 cut(s) 447, 506, 517
Bsa29I ATCGAT 1 cut(s) 265
BsaAI YACGTR 1 cut(s) 746
BsaBI GATNNNNATC 1 cut(s) 833
BsaI GGTCTC 2 cut(s) 1109, 1115
BsaJI CCNNGG 2 cut(s) 468, 732
BsaWI WCCGGW 4 cut(s) 545, 557, 578, 585
Bsc4I CCNNNNNNNGG 5 cut(s) 301, 564, 578, 585, 612
Bse118I RCCGGY 1 cut(s) 585
Bse1I ACTGG 3 cut(s) 35, 207, 553
Bse8I GATNNNNATC 1 cut(s) 833
BseAI TCCGGA 1 cut(s) 545
BseBI CCWGG 4 cut(s) 125, 310, 476, 481
BseCI ATCGAT 1 cut(s) 265
BseDI CCNNGG 2 cut(s) 468, 732
BseGI GGATG 2 cut(s) 340, 1054
BseJI GATNNNNATC 1 cut(s) 833
BseLI CCNNNNNNNGG 5 cut(s) 301, 564, 578, 585, 612
BseMII CTCAG 1 cut(s) 645
BseNI ACTGG 3 cut(s) 35, 207, 553
BseRI GAGGAG 3 cut(s) 435, 438, 677
BseXI GCAGC 2 cut(s) 344, 877
BseYI CCCAGC 1 cut(s) 1026
BsgI GTGCAG 1 cut(s) 1122
Bsh1236I CGCG 1 cut(s) 302
Bsh1285I CGRYCG 1 cut(s) 300
BshFI GGCC 7 cut(s) 308, 445, 467, 474, 479, 504, 731
BshTI ACCGGT 1 cut(s) 585
BshVI ATCGAT 1 cut(s) 265
BsiEI CGRYCG 1 cut(s) 300
BsiHKAI GWGCWC 5 cut(s) 46, 214, 246, 329, 442
BsiHKCI CYCGRG 1 cut(s) 462
BsiSI CCGG 8 cut(s) 447, 506, 517, 546, 558, 579, 586, 613
BslFI GGGAC 1 cut(s) 691
BslI CCNNNNNNNGG 5 cut(s) 301, 564, 578, 585, 612
BsmAI GTCTC 4 cut(s) 222, 1109, 1115, 1121
BsmFI GGGAC 1 cut(s) 691
BsnI GGCC 7 cut(s) 308, 445, 467, 474, 479, 504, 731
Bso31I GGTCTC 2 cut(s) 1109, 1115
BsoBI CYCGRG 1 cut(s) 462
Bsp1286I GDGCHC 7 cut(s) 46, 214, 246, 329, 442, 463, 801
Bsp13I TCCGGA 1 cut(s) 545
Bsp143I GATC 7 cut(s) 266, 297, 362, 391, 667, 721, 834
Bsp19I CCATGG 1 cut(s) 468
BspACI CCGC 3 cut(s) 174, 302, 305
BspANI GGCC 7 cut(s) 308, 445, 467, 474, 479, 504, 731
BspCNI CTCAG 1 cut(s) 646
BspDI ATCGAT 1 cut(s) 265
BspEI TCCGGA 1 cut(s) 545
BspFNI CGCG 1 cut(s) 302
BspLI GGNNCC 1 cut(s) 800
BspMAI CTGCAG 1 cut(s) 362
BspPI GGATC 3 cut(s) 261, 675, 829
BspTNI GGTCTC 2 cut(s) 1109, 1115
BsrFI RCCGGY 1 cut(s) 585
BsrI ACTGG 3 cut(s) 35, 207, 553
BssAI RCCGGY 1 cut(s) 585
BssECI CCNNGG 2 cut(s) 468, 732
BssMI GATC 7 cut(s) 266, 297, 362, 391, 667, 721, 834
BssSI CACGAG 1 cut(s) 435
BssT1I CCWWGG 2 cut(s) 468, 732
Bst2BI CACGAG 1 cut(s) 435
Bst2UI CCWGG 4 cut(s) 125, 310, 476, 481
Bst4CI ACNGT 4 cut(s) 170, 402, 454, 791
BstAPI GCANNNNNTGC 1 cut(s) 1049
BstBAI YACGTR 1 cut(s) 746
BstC8I GCNNGC 2 cut(s) 329, 981
BstDEI CTNAG 1 cut(s) 654
BstDSI CCRYGG 1 cut(s) 468
BstEII GGTNACC 3 cut(s) 581, 588, 601
BstF5I GGATG 2 cut(s) 340, 1054
BstFNI CGCG 1 cut(s) 302
BstKTI GATC 7 cut(s) 269, 300, 365, 394, 670, 724, 837
BstMAI GTCTC 4 cut(s) 222, 1109, 1115, 1121
BstMBI GATC 7 cut(s) 266, 297, 362, 391, 667, 721, 834
BstMCI CGRYCG 1 cut(s) 300
BstMWI GCNNNNNNNGC 4 cut(s) 354, 953, 989, 1049
BstNI CCWGG 4 cut(s) 125, 310, 476, 481
BstNSI RCATGY 1 cut(s) 983
BstPAI GACNNNNGTC 1 cut(s) 553
BstPI GGTNACC 3 cut(s) 581, 588, 601
BstSCI CCNGG 7 cut(s) 123, 308, 445, 474, 479, 504, 515
BstSFI CTRYAG 1 cut(s) 358
BstUI CGCG 1 cut(s) 302
BstV1I GCAGC 2 cut(s) 344, 877
BstV2I GAAGAC 3 cut(s) 24, 320, 881
BstX2I RGATCY 3 cut(s) 362, 391, 834
BstYI RGATCY 3 cut(s) 362, 391, 834
Bsu15I ATCGAT 1 cut(s) 265
BsuRI GGCC 7 cut(s) 308, 445, 467, 474, 479, 504, 731
BsuTUI ATCGAT 1 cut(s) 265
BtgI CCRYGG 1 cut(s) 468
BtrI CACGTC 1 cut(s) 318
BtsCI GGATG 2 cut(s) 340, 1054
BtsIMutI CAGTG 2 cut(s) 214, 796
Cac8I GCNNGC 2 cut(s) 329, 981
Cfr10I RCCGGY 1 cut(s) 585
Cfr13I GGNCC 5 cut(s) 127, 444, 465, 472, 503
ClaI ATCGAT 1 cut(s) 265
CseI GACGC 1 cut(s) 193
Csp6I GTAC 1 cut(s) 865
CspAI ACCGGT 1 cut(s) 585
CviAII CATG 6 cut(s) 370, 469, 703, 804, 879, 980
CviQI GTAC 1 cut(s) 865
DdeI CTNAG 1 cut(s) 654
DpnI GATC 7 cut(s) 268, 299, 364, 393, 669, 723, 836
DpnII GATC 7 cut(s) 266, 297, 362, 391, 667, 721, 834
EaeI YGGCCR 2 cut(s) 306, 729
Ecl136II GAGCTC 1 cut(s) 44
Eco130I CCWWGG 2 cut(s) 468, 732
Eco24I GRGCYC 3 cut(s) 46, 463, 801
Eco31I GGTCTC 2 cut(s) 1109, 1115
Eco47I GGWCC 1 cut(s) 127
Eco53kI GAGCTC 1 cut(s) 44
Eco57I CTGAAG 2 cut(s) 36, 45
Eco88I CYCGRG 1 cut(s) 462
Eco91I GGTNACC 3 cut(s) 581, 588, 601
EcoICRI GAGCTC 1 cut(s) 44
EcoO65I GGTNACC 3 cut(s) 581, 588, 601
EcoRII CCWGG 4 cut(s) 123, 308, 474, 479
EcoT14I CCWWGG 2 cut(s) 468, 732
EcoT38I GRGCYC 3 cut(s) 46, 463, 801
ErhI CCWWGG 2 cut(s) 468, 732
FaeI CATG 6 cut(s) 373, 472, 706, 807, 882, 983
FalI AAGNNNNNCTT 2 cut(s) 936, 968
FaqI GGGAC 1 cut(s) 691
FatI CATG 6 cut(s) 369, 468, 702, 803, 878, 979
FauNDI CATATG 2 cut(s) 726, 988
Fnu4HI GCNGC 4 cut(s) 303, 306, 358, 891
FokI GGATG 2 cut(s) 327, 1061
FriOI GRGCYC 3 cut(s) 46, 463, 801
Fsp4HI GCNGC 4 cut(s) 303, 306, 358, 891
GluI GCNGC 4 cut(s) 303, 306, 358, 891
GsaI CCCAGC 1 cut(s) 1030
GsuI CTGGAG 5 cut(s) 18, 30, 59, 190, 204
HaeIII GGCC 7 cut(s) 308, 445, 467, 474, 479, 504, 731
HapII CCGG 8 cut(s) 447, 506, 517, 546, 558, 579, 586, 613
HgaI GACGC 1 cut(s) 193
Hin1II CATG 6 cut(s) 373, 472, 706, 807, 882, 983
HincII GTYRAC 1 cut(s) 809
HindII GTYRAC 1 cut(s) 809
HindIII AAGCTT 2 cut(s) 346, 945
HinfI GANTC 7 cut(s) 337, 542, 568, 575, 595, 616, 914
HpaII CCGG 8 cut(s) 447, 506, 517, 546, 558, 579, 586, 613
HphI GGTGA 7 cut(s) 171, 265, 582, 593, 595, 632, 1021
Hpy166II GTNNAC 3 cut(s) 749, 809, 1094
Hpy188I TCNGA 4 cut(s) 41, 64, 382, 655
Hpy188III TCNNGA 6 cut(s) 76, 546, 572, 767, 871, 1114
Hpy8I GTNNAC 3 cut(s) 749, 809, 1094
Hpy99I CGWCG 4 cut(s) 26, 187, 337, 406
HpyAV CCTTC 3 cut(s) 379, 682, 788
HpyCH4III ACNGT 4 cut(s) 170, 402, 454, 791
HpyCH4IV ACGT 3 cut(s) 317, 536, 745
HpyCH4V TGCA 7 cut(s) 4, 360, 397, 893, 956, 992, 1103
HpyF10VI GCNNNNNNNGC 4 cut(s) 354, 953, 989, 1049
HpyF3I CTNAG 1 cut(s) 654
HpySE526I ACGT 3 cut(s) 317, 536, 745
Hsp92II CATG 6 cut(s) 373, 472, 706, 807, 882, 983
Kpn2I TCCGGA 1 cut(s) 545
Kzo9I GATC 7 cut(s) 266, 297, 362, 391, 667, 721, 834
LmnI GCTCC 4 cut(s) 37, 41, 49, 804
Lsp1109I GCAGC 2 cut(s) 344, 877
LweI GCATC 1 cut(s) 1039
MaeII ACGT 3 cut(s) 317, 536, 745
MaeIII GTNAC 3 cut(s) 581, 588, 601
MalI GATC 7 cut(s) 268, 299, 364, 393, 669, 723, 836
MboI GATC 7 cut(s) 266, 297, 362, 391, 667, 721, 834
MboII GAAGA 8 cut(s) 29, 38, 298, 325, 440, 629, 731, 886
MfeI CAATTG 1 cut(s) 993
MflI RGATCY 3 cut(s) 362, 391, 834
MhlI GDGCHC 7 cut(s) 46, 214, 246, 329, 442, 463, 801
MlsI TGGCCA 1 cut(s) 731
MluCI AATT 3 cut(s) 851, 993, 1077
MluNI TGGCCA 1 cut(s) 731
MmeI TCCRAC 4 cut(s) 19, 33, 80, 519
MnlI CCTC 8 cut(s) 214, 413, 416, 621, 655, 658, 954, 1012
Mox20I TGGCCA 1 cut(s) 731
MroI TCCGGA 1 cut(s) 545
MroXI GAANNNNTTC 1 cut(s) 636
MscI TGGCCA 1 cut(s) 731
MseI TTAA 6 cut(s) 486, 624, 675, 831, 1068, 1076
Msp20I TGGCCA 1 cut(s) 731
MspI CCGG 8 cut(s) 447, 506, 517, 546, 558, 579, 586, 613
MspR9I CCNGG 7 cut(s) 125, 310, 447, 476, 481, 506, 517
MunI CAATTG 1 cut(s) 993
MvaI CCWGG 4 cut(s) 125, 310, 476, 481
MvnI CGCG 1 cut(s) 302
MwoI GCNNNNNNNGC 4 cut(s) 354, 953, 989, 1049
NciI CCSGG 3 cut(s) 447, 506, 517
NcoI CCATGG 1 cut(s) 468
NdeI CATATG 2 cut(s) 726, 988
NdeII GATC 7 cut(s) 266, 297, 362, 391, 667, 721, 834
NlaIII CATG 6 cut(s) 373, 472, 706, 807, 882, 983
NlaIV GGNNCC 1 cut(s) 800
NmuCI GTSAC 3 cut(s) 581, 588, 601
NspI RCATGY 1 cut(s) 983
PaeI GCATGC 1 cut(s) 983
PdmI GAANNNNTTC 1 cut(s) 636
PfeI GAWTC 7 cut(s) 337, 542, 568, 575, 595, 616, 914
PflFI GACNNNGTC 1 cut(s) 376
PinAI ACCGGT 1 cut(s) 585
PkrI GCNGC 4 cut(s) 304, 307, 359, 892
Ple19I CGATCG 1 cut(s) 300
Ppu21I YACGTR 1 cut(s) 746
PshAI GACNNNNGTC 1 cut(s) 553
PshBI ATTAAT 2 cut(s) 675, 1076
Psp124BI GAGCTC 1 cut(s) 46
Psp6I CCWGG 4 cut(s) 123, 308, 474, 479
PspEI GGTNACC 3 cut(s) 581, 588, 601
PspFI CCCAGC 1 cut(s) 1026
PspGI CCWGG 4 cut(s) 123, 308, 474, 479
PspN4I GGNNCC 1 cut(s) 800
PspPI GGNCC 5 cut(s) 127, 444, 465, 472, 503
PstI CTGCAG 1 cut(s) 362
PsuI RGATCY 3 cut(s) 362, 391, 834
PsyI GACNNNGTC 1 cut(s) 376
PvuI CGATCG 1 cut(s) 300
RsaI GTAC 1 cut(s) 866
RsaNI GTAC 1 cut(s) 865
SacI GAGCTC 1 cut(s) 46
SaqAI TTAA 6 cut(s) 486, 624, 675, 831, 1068, 1076
SatI GCNGC 4 cut(s) 303, 306, 358, 891
Sau3AI GATC 7 cut(s) 266, 297, 362, 391, 667, 721, 834
Sau96I GGNCC 5 cut(s) 127, 444, 465, 472, 503
ScrFI CCNGG 7 cut(s) 125, 310, 447, 476, 481, 506, 517
SduI GDGCHC 7 cut(s) 46, 214, 246, 329, 442, 463, 801
SfaNI GCATC 1 cut(s) 1039
SfcI CTRYAG 1 cut(s) 358
SinI GGWCC 1 cut(s) 127
SphI GCATGC 1 cut(s) 983
Sse9I AATT 3 cut(s) 851, 993, 1077
SsiI CCGC 3 cut(s) 174, 302, 305
SspI AATATT 2 cut(s) 679, 1066
SstI GAGCTC 1 cut(s) 46
StyD4I CCNGG 7 cut(s) 123, 308, 445, 474, 479, 504, 515
StyI CCWWGG 2 cut(s) 468, 732
TaaI ACNGT 4 cut(s) 170, 402, 454, 791
TaiI ACGT 3 cut(s) 320, 539, 748
TaqI TCGA 4 cut(s) 240, 265, 404, 1113
TaqII GACCGA 2 cut(s) 1133, 1139
TasI AATT 3 cut(s) 851, 993, 1077
TatI WGTACW 1 cut(s) 864
TauI GCSGC 2 cut(s) 305, 308
TfiI GAWTC 7 cut(s) 337, 542, 568, 575, 595, 616, 914
Tru1I TTAA 6 cut(s) 486, 624, 675, 831, 1068, 1076
Tru9I TTAA 6 cut(s) 486, 624, 675, 831, 1068, 1076
TscAI CASTG 2 cut(s) 214, 796
TseFI GTSAC 3 cut(s) 581, 588, 601
TseI GCWGC 2 cut(s) 357, 890
Tsp45I GTSAC 3 cut(s) 581, 588, 601
TspDTI ATGAA 2 cut(s) 774, 1101
TspGWI ACGGA 1 cut(s) 609
TspRI CASTG 2 cut(s) 214, 796
Tth111I GACNNNGTC 1 cut(s) 376
VpaK11BI GGWCC 1 cut(s) 127
VspI ATTAAT 2 cut(s) 675, 1076
XceI RCATGY 1 cut(s) 983
XmnI GAANNNNTTC 1 cut(s) 636
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.