Rmu_sc0004612.1_g000002

Serine-rich protein-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004612.1
OG0020732
Physical Location & Seq
Reverse (-)
7893 .. 8906
1014 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004612.1_g000002.1.cds

Sequence Viewer

Length: 624 bp
atgcggtccaaccctgaagacgacgaagaagctccagtcggagctccagccactctaacgtcggaaatcagactccagaccaccagcttctcgtctccgtcgtctgcctttttcaacaaccgccaggaccaccatagccactacaaccacaccgactaccaccaccaccgttccgcttcaccgacgcatatcaatctctacacctccaatgctctgtctctagctttctgcttctccatcgagcaccgttccatctccccaaatcaatccatcacaatttccaagaagaacggcccgatcgcggcggccaggaagacgagtatgtgctcgccgacgaatcatccaagctcgtttcactgcagatctgccatgacgaaatcggagaagggagatctgcaaccgtcgaagtcaaagatgggaggagaagaagaagtattattagggggcaataaattcagacgtaggaatccggacaccagtccggtagccggattcttgattccggtgacctgtcgccggattcaggtcacctgtcgtaggattccggtcacctgtcgcaggattccggtcacaggagtcggcgcccagccactggtcaccagaggctggcaaggtggaggatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

207

Amino Acids

22.74

Weight (kDa)

9.73

Isoelectric Point (pI)

76.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 581
AccB7I CCANNNNNTGG 2 cut(s) 592, 606
AccII CGCG 1 cut(s) 302
AccIII TCCGGA 1 cut(s) 469
AciI CCGC 5 cut(s) 4, 121, 174, 302, 305
AcoI YGGCCR 1 cut(s) 306
AcsI RAATTY 1 cut(s) 452
AcuI CTGAAG 1 cut(s) 36
AcyI GRCGYC 1 cut(s) 582
AfiI CCNNNNNNNGG 9 cut(s) 301, 488, 516, 523, 537, 558, 572, 592, 606
AgsI TTSAA 1 cut(s) 115
AjnI CCWGG 2 cut(s) 123, 308
AluBI AGCT 5 cut(s) 32, 44, 87, 224, 348
AluI AGCT 5 cut(s) 32, 44, 87, 224, 348
Alw21I GWGCWC 3 cut(s) 46, 246, 329
Alw26I GTCTC 2 cut(s) 99, 222
AlwNI CAGNNNCTG 2 cut(s) 592, 606
Aor13HI TCCGGA 1 cut(s) 469
AoxI GGCC 2 cut(s) 292, 306
ApoI RAATTY 1 cut(s) 452
AspLEI GCGC 1 cut(s) 584
AspS9I GGNCC 3 cut(s) 6, 127, 293
AsuHPI GGTGA 5 cut(s) 171, 517, 520, 541, 589
AvaII GGWCC 2 cut(s) 6, 127
BanI GGYRCC 1 cut(s) 581
BanII GRGCYC 1 cut(s) 46
BbsI GAAGAC 2 cut(s) 24, 320
Bbv12I GWGCWC 3 cut(s) 46, 246, 329
BccI CCATC 4 cut(s) 245, 260, 278, 409
BceAI ACGGC 1 cut(s) 307
BciT130I CCWGG 2 cut(s) 125, 310
BcoDI GTCTC 2 cut(s) 99, 222
BfaI CTAG 1 cut(s) 221
BfmI CTRYAG 1 cut(s) 358
BfoI RGCGCY 1 cut(s) 585
BglII AGATCT 2 cut(s) 362, 391
BisI GCNGC 2 cut(s) 303, 306
BlsI GCNGC 2 cut(s) 304, 307
Bme1390I CCNGG 2 cut(s) 125, 310
Bme18I GGWCC 2 cut(s) 6, 127
BmgT120I GGNCC 3 cut(s) 6, 127, 293
BmiI GGNNCC 1 cut(s) 583
BmrFI CCNGG 2 cut(s) 125, 310
BoxI GACNNNNGTC 1 cut(s) 477
BpiI GAAGAC 2 cut(s) 24, 320
BpmI CTGGAG 3 cut(s) 18, 30, 59
BsaHI GRCGYC 1 cut(s) 582
BsaWI WCCGGW 5 cut(s) 469, 481, 502, 544, 565
Bsc4I CCNNNNNNNGG 9 cut(s) 301, 488, 516, 523, 537, 558, 572, 592, 606
Bse1I ACTGG 3 cut(s) 35, 477, 597
BseAI TCCGGA 1 cut(s) 469
BseBI CCWGG 2 cut(s) 125, 310
BseGI GGATG 1 cut(s) 340
BseLI CCNNNNNNNGG 9 cut(s) 301, 488, 516, 523, 537, 558, 572, 592, 606
BseNI ACTGG 3 cut(s) 35, 477, 597
BseRI GAGGAG 1 cut(s) 435
BseYI CCCAGC 1 cut(s) 585
Bsh1236I CGCG 1 cut(s) 302
Bsh1285I CGRYCG 1 cut(s) 300
BshFI GGCC 2 cut(s) 294, 308
BshNI GGYRCC 1 cut(s) 581
BsiEI CGRYCG 1 cut(s) 300
BsiHKAI GWGCWC 3 cut(s) 46, 246, 329
BsiSI CCGG 7 cut(s) 470, 482, 489, 503, 517, 545, 566
BslI CCNNNNNNNGG 9 cut(s) 301, 488, 516, 523, 537, 558, 572, 592, 606
BsmAI GTCTC 2 cut(s) 99, 222
BsmBI CGTCTC 1 cut(s) 99
BsnI GGCC 2 cut(s) 294, 308
Bsp1286I GDGCHC 3 cut(s) 46, 246, 329
Bsp13I TCCGGA 1 cut(s) 469
Bsp143I GATC 3 cut(s) 297, 362, 391
BspACI CCGC 5 cut(s) 4, 121, 174, 302, 305
BspANI GGCC 2 cut(s) 294, 308
BspEI TCCGGA 1 cut(s) 469
BspFNI CGCG 1 cut(s) 302
BspLI GGNNCC 1 cut(s) 583
BspMAI CTGCAG 1 cut(s) 362
BspT107I GGYRCC 1 cut(s) 581
BsrI ACTGG 3 cut(s) 35, 477, 597
BssMI GATC 3 cut(s) 297, 362, 391
BssNI GRCGYC 1 cut(s) 582
Bst2UI CCWGG 2 cut(s) 125, 310
Bst4CI ACNGT 3 cut(s) 170, 248, 402
BstACI GRCGYC 1 cut(s) 582
BstC8I GCNNGC 2 cut(s) 329, 608
BstEII GGTNACC 4 cut(s) 505, 526, 547, 595
BstENI CCTNNNNNAGG 2 cut(s) 535, 556
BstF5I GGATG 1 cut(s) 340
BstFNI CGCG 1 cut(s) 302
BstH2I RGCGCY 1 cut(s) 585
BstHHI GCGC 1 cut(s) 584
BstKTI GATC 3 cut(s) 300, 365, 394
BstMAI GTCTC 2 cut(s) 99, 222
BstMBI GATC 3 cut(s) 297, 362, 391
BstMCI CGRYCG 1 cut(s) 300
BstNI CCWGG 2 cut(s) 125, 310
BstPAI GACNNNNGTC 1 cut(s) 477
BstPI GGTNACC 4 cut(s) 505, 526, 547, 595
BstSCI CCNGG 2 cut(s) 123, 308
BstSFI CTRYAG 1 cut(s) 358
BstUI CGCG 1 cut(s) 302
BstV2I GAAGAC 2 cut(s) 24, 320
BstX2I RGATCY 2 cut(s) 362, 391
BstYI RGATCY 2 cut(s) 362, 391
BsuRI GGCC 2 cut(s) 294, 308
BtsCI GGATG 1 cut(s) 340
BtsI GCAGTG 1 cut(s) 355
BtsIMutI CAGTG 2 cut(s) 355, 590
Cac8I GCNNGC 2 cut(s) 329, 608
CaiI CAGNNNCTG 2 cut(s) 592, 606
CfoI GCGC 1 cut(s) 584
Cfr13I GGNCC 3 cut(s) 6, 127, 293
CseI GACGC 1 cut(s) 193
CviAII CATG 1 cut(s) 370
DinI GGCGCC 1 cut(s) 583
DpnI GATC 3 cut(s) 299, 364, 393
DpnII GATC 3 cut(s) 297, 362, 391
EaeI YGGCCR 1 cut(s) 306
Ecl136II GAGCTC 1 cut(s) 44
Eco24I GRGCYC 1 cut(s) 46
Eco47I GGWCC 2 cut(s) 6, 127
Eco53kI GAGCTC 1 cut(s) 44
Eco57I CTGAAG 1 cut(s) 36
Eco91I GGTNACC 4 cut(s) 505, 526, 547, 595
EcoICRI GAGCTC 1 cut(s) 44
EcoNI CCTNNNNNAGG 2 cut(s) 535, 556
EcoO65I GGTNACC 4 cut(s) 505, 526, 547, 595
EcoRII CCWGG 2 cut(s) 123, 308
EcoT38I GRGCYC 1 cut(s) 46
EgeI GGCGCC 1 cut(s) 583
EheI GGCGCC 1 cut(s) 583
Esp3I CGTCTC 1 cut(s) 99
FaeI CATG 1 cut(s) 373
FaiI YATR 4 cut(s) 135, 189, 323, 371
FatI CATG 1 cut(s) 369
Fnu4HI GCNGC 2 cut(s) 303, 306
FokI GGATG 1 cut(s) 327
FriOI GRGCYC 1 cut(s) 46
Fsp4HI GCNGC 2 cut(s) 303, 306
FspBI CTAG 1 cut(s) 221
GlaI GCGC 1 cut(s) 583
GluI GCNGC 2 cut(s) 303, 306
GsaI CCCAGC 1 cut(s) 589
GsuI CTGGAG 3 cut(s) 18, 30, 59
HaeII RGCGCY 1 cut(s) 585
HaeIII GGCC 2 cut(s) 294, 308
HapII CCGG 7 cut(s) 470, 482, 489, 503, 517, 545, 566
HgaI GACGC 1 cut(s) 193
HhaI GCGC 1 cut(s) 584
Hin1I GRCGYC 1 cut(s) 582
Hin1II CATG 1 cut(s) 373
Hin6I GCGC 1 cut(s) 582
HinP1I GCGC 1 cut(s) 582
HinfI GANTC 9 cut(s) 72, 337, 466, 492, 499, 520, 541, 562, 576
HpaII CCGG 7 cut(s) 470, 482, 489, 503, 517, 545, 566
HphI GGTGA 5 cut(s) 171, 517, 520, 541, 589
Hpy188I TCNGA 5 cut(s) 41, 64, 71, 382, 458
Hpy188III TCNNGA 3 cut(s) 76, 470, 496
Hpy99I CGWCG 6 cut(s) 26, 64, 103, 187, 337, 406
HpyAV CCTTC 1 cut(s) 379
HpyCH4III ACNGT 3 cut(s) 170, 248, 402
HpyCH4IV ACGT 2 cut(s) 59, 460
HpyCH4V TGCA 2 cut(s) 360, 397
HpySE526I ACGT 2 cut(s) 59, 460
Hsp92I GRCGYC 1 cut(s) 582
Hsp92II CATG 1 cut(s) 373
HspAI GCGC 1 cut(s) 582
KasI GGCGCC 1 cut(s) 581
Kpn2I TCCGGA 1 cut(s) 469
Kzo9I GATC 3 cut(s) 297, 362, 391
LmnI GCTCC 3 cut(s) 37, 41, 49
MaeI CTAG 1 cut(s) 221
MaeII ACGT 2 cut(s) 59, 460
MaeIII GTNAC 5 cut(s) 505, 526, 547, 568, 595
MalI GATC 3 cut(s) 299, 364, 393
MboI GATC 3 cut(s) 297, 362, 391
MboII GAAGA 6 cut(s) 29, 38, 298, 325, 437, 440
MflI RGATCY 2 cut(s) 362, 391
MhlI GDGCHC 3 cut(s) 46, 246, 329
MluCI AATT 2 cut(s) 276, 452
Mly113I GGCGCC 1 cut(s) 582
MlyI GAGTC 2 cut(s) 66, 585
MmeI TCCRAC 3 cut(s) 19, 33, 42
MnlI CCTC 4 cut(s) 214, 413, 596, 611
MroI TCCGGA 1 cut(s) 469
MspI CCGG 7 cut(s) 470, 482, 489, 503, 517, 545, 566
MspR9I CCNGG 2 cut(s) 125, 310
MvaI CCWGG 2 cut(s) 125, 310
MvnI CGCG 1 cut(s) 302
NarI GGCGCC 1 cut(s) 582
NdeII GATC 3 cut(s) 297, 362, 391
NlaIII CATG 1 cut(s) 373
NlaIV GGNNCC 1 cut(s) 583
NmuCI GTSAC 5 cut(s) 505, 526, 547, 568, 595
PcsI WCGNNNNNNNCGW 1 cut(s) 98
PfeI GAWTC 7 cut(s) 337, 466, 492, 499, 520, 541, 562
PflMI CCANNNNNTGG 2 cut(s) 592, 606
PkrI GCNGC 2 cut(s) 304, 307
Ple19I CGATCG 1 cut(s) 300
PleI GAGTC 2 cut(s) 66, 584
PluTI GGCGCC 1 cut(s) 585
PpsI GAGTC 2 cut(s) 66, 584
PshAI GACNNNNGTC 1 cut(s) 477
Psp124BI GAGCTC 1 cut(s) 46
Psp6I CCWGG 2 cut(s) 123, 308
PspEI GGTNACC 4 cut(s) 505, 526, 547, 595
PspFI CCCAGC 1 cut(s) 585
PspGI CCWGG 2 cut(s) 123, 308
PspN4I GGNNCC 1 cut(s) 583
PspPI GGNCC 3 cut(s) 6, 127, 293
PstI CTGCAG 1 cut(s) 362
PstNI CAGNNNCTG 2 cut(s) 592, 606
PsuI RGATCY 2 cut(s) 362, 391
PvuI CGATCG 1 cut(s) 300
SacI GAGCTC 1 cut(s) 46
SatI GCNGC 2 cut(s) 303, 306
Sau3AI GATC 3 cut(s) 297, 362, 391
Sau96I GGNCC 3 cut(s) 6, 127, 293
SchI GAGTC 2 cut(s) 66, 585
ScrFI CCNGG 2 cut(s) 125, 310
SduI GDGCHC 3 cut(s) 46, 246, 329
SfcI CTRYAG 1 cut(s) 358
SfoI GGCGCC 1 cut(s) 583
SinI GGWCC 2 cut(s) 6, 127
Sse9I AATT 2 cut(s) 276, 452
SsiI CCGC 5 cut(s) 4, 121, 174, 302, 305
SspDI GGCGCC 1 cut(s) 581
SspMI CTAG 1 cut(s) 221
SstI GAGCTC 1 cut(s) 46
StyD4I CCNGG 2 cut(s) 123, 308
TaaI ACNGT 3 cut(s) 170, 248, 402
TaiI ACGT 2 cut(s) 62, 463
TaqI TCGA 2 cut(s) 240, 404
TasI AATT 2 cut(s) 276, 452
TauI GCSGC 2 cut(s) 305, 308
TfiI GAWTC 7 cut(s) 337, 466, 492, 499, 520, 541, 562
TscAI CASTG 2 cut(s) 362, 597
TseFI GTSAC 5 cut(s) 505, 526, 547, 568, 595
Tsp45I GTSAC 5 cut(s) 505, 526, 547, 568, 595
TspGWI ACGGA 1 cut(s) 87
TspRI CASTG 2 cut(s) 362, 597
Van91I CCANNNNNTGG 2 cut(s) 592, 606
VpaK11BI GGWCC 2 cut(s) 6, 127
XagI CCTNNNNNAGG 2 cut(s) 535, 556
XapI RAATTY 1 cut(s) 452
XspI CTAG 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.