Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001509.1

Orthogroup ID

OG0019349

Physical Location & Seq

Genomic Coordinates Forward (+)

12899 .. 17056

Gene Structure 4158 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001509.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1386 bp

atgttgactttttattcgttgggattctctggaaacttccttcacgaaagttgtagagcgcatcgatacgagttcgtggatatgtggaatgcggaaatcggaagtcaaagaattttgactgacccgacccgaacccggcattccgacccgacttttccggagagctccggccacctccggcgacgaaactttccagacaggattgcctccgccgtctggtcgtccctctggtgttctcttacggcgattctccgtctcggtggcagttcaaggcggtgcagattgaagaaatcggacccgaccggaaaacacagttccgacatcggcacggcttcgatttttcttgatcagacaccgatcaagacaccaaatggttctatatggaagtcgtcatcaccggcgctatcaacaagtgatgggttcgtcaacaccgtcttctggatccagaccattctcggccgaagcttaggtcgggtacagggccgacgagatcggaagaacaactatagtaaggtgaagatattctctattggctcaccggccgacttctatgctctctcgccctctctttcttctcttcgagatcgccaaggactggaagagtcaagctcaccgtctagatcgatggccaaggaagagatcgtcatcagtctccttgtaaattcaaaaccgagattttgccctctgaaaaccctaaagttcaaaacaatagcactatctggggttggtgaatccttgcaaaatgtggctgaggtaaccaagaataccgcactgactgctgctctaaatacacaattcctccttcaaattggtatctttactgctgtcccgatgattttaggcttcatcttggaacatggtttcctgcgggccatagtaagtttcctcacaatgcagttgcaactttgttctgtcttcttcacattctccttgggaaccaaaacacattattttggccggacaattctccatggtggtgcaaagtatcaagcaaccggcaggggatttgtagtccggcatattaagtttatagagaattacaggctttactcccgtagtcattttatcaaagggttggaagtagttcttttgttggtagtgtaccttgcttatggatatgatgatggcggtgctatctcatacattcttctttcaatgaccagttggttcatggctctttcttggctttttgctccctatttgttcaacccatctgggtttgagtggcagaaggttgtggaggatttccgagattggacaaattggcttctttatagaggtggaattggagttaagggtgaagaaagctgggaaacttggtcggaggaagaactggtaatacttctgattttacatcaaattgcatggctttttttagttacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000278 GO:0000280 GO:0001558 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0006996 GO:0007049 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009556 GO:0009846 GO:0009856 GO:0009987 GO:0010769 GO:0012505 GO:0016020 GO:0016043 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0022603 GO:0022604 GO:0032501 GO:0032502 GO:0032504 GO:0033036 GO:0033037 GO:0034293 GO:0040007 GO:0040008 GO:0042545 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043934 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0044706 GO:0045229 GO:0045595 GO:0048229 GO:0048232 GO:0048236 GO:0048285 GO:0048589 GO:0048609 GO:0048638 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051179 GO:0051239 GO:0051321 GO:0051510 GO:0051641 GO:0051704 GO:0052386 GO:0052543 GO:0052545 GO:0055047 GO:0060284 GO:0065007 GO:0070727 GO:0071554 GO:0071555 GO:0071840 GO:0071944 GO:0080092 GO:0140014 GO:1903046 GO:1903047 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKS1_dom1 Glucan_synthase

Protein Analysis

461

Amino Acids

52.09

Weight (kDa)

9.56

Isoelectric Point (pI)

43.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019349)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0351491 RchiOBHm_Chr5g0026011
rosa_multiflora	Rmu_sc0001509.1_g000002
rosa_roxburghii	Rroxscaffold_1G00020920 Rroxscaffold_2G00117850 Rroxscaffold_5G00350950
rosa_samantha	Rh3CG223200 Rh4DG102400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	595
AccIII	TCCGGA	1 cut(s)	157
AciI	CCGC	6 cut(s)	92, 210, 274, 768, 868, 1128
AclWI	GGATC	2 cut(s)	436, 449
AcoI	YGGCCR	5 cut(s)	169, 457, 540, 627, 955
AcsI	RAATTY	2 cut(s)	111, 661
AfaI	GTAC	2 cut(s)	477, 1103
AfiI	CCNNNNNNNGG	4 cut(s)	135, 216, 438, 595
AgsI	TTSAA	7 cut(s)	270, 286, 666, 703, 806, 1155, 1207
AloI	GAACNNNNNNTCC	2 cut(s)	846, 878
AluBI	AGCT	4 cut(s)	165, 465, 609, 1308
AluI	AGCT	4 cut(s)	165, 465, 609, 1308
Alw21I	GWGCWC	1 cut(s)	167
Alw26I	GTCTC	2 cut(s)	260, 656
AlwI	GGATC	2 cut(s)	436, 449
Aor13HI	TCCGGA	1 cut(s)	157
AoxI	GGCC	7 cut(s)	169, 457, 481, 540, 627, 870, 955
ApeKI	GCWGC	1 cut(s)	779
ApoI	RAATTY	2 cut(s)	111, 661
ArsI	GACNNNNNNTTYG	3 cut(s)	30, 454, 486
Asp700I	GAANNNNTTC	2 cut(s)	521, 1083
AspLEI	GCGC	2 cut(s)	61, 403
AspS9I	GGNCC	3 cut(s)	295, 481, 870
AsuC2I	CCSGG	1 cut(s)	136
AsuHPI	GGTGA	6 cut(s)	387, 526, 528, 603, 740, 1310
AvaII	GGWCC	1 cut(s)	295
BalI	TGGCCA	1 cut(s)	629
BamHI	GGATCC	1 cut(s)	441
BanII	GRGCYC	1 cut(s)	167
BbsI	GAAGAC	2 cut(s)	427, 907
Bbv12I	GWGCWC	1 cut(s)	167
BbvCI	CCTCAGC	1 cut(s)	750
BbvI	GCAGC	1 cut(s)	766
BccI	CCATC	4 cut(s)	410, 619, 1118, 1219
BceAI	ACGGC	3 cut(s)	197, 258, 345
BcgI	CGANNNNNNTGC	2 cut(s)	533, 567
BclI	TGATCA	1 cut(s)	346
BcnI	CCSGG	1 cut(s)	136
BcoDI	GTCTC	2 cut(s)	260, 656
BfaI	CTAG	1 cut(s)	618
BfmI	CTRYAG	1 cut(s)	505
BfoI	RGCGCY	1 cut(s)	404
BisI	GCNGC	1 cut(s)	780
BlsI	GCNGC	1 cut(s)	781
Bme1390I	CCNGG	1 cut(s)	136
Bme18I	GGWCC	1 cut(s)	295
BmgT120I	GGNCC	3 cut(s)	295, 481, 870
BmiI	GGNNCC	3 cut(s)	297, 443, 937
BmrFI	CCNGG	1 cut(s)	136
BmsI	GCATC	1 cut(s)	70
BpiI	GAAGAC	2 cut(s)	427, 907
BplI	GAGNNNNNCTC	2 cut(s)	593, 625
Bpu10I	CCTNAGC	2 cut(s)	466, 750
BpuMI	CCSGG	1 cut(s)	136
Bsa29I	ATCGAT	2 cut(s)	64, 623
BsaBI	GATNNNNATC	1 cut(s)	644
BsaJI	CCNNGG	4 cut(s)	589, 630, 930, 970
BsaWI	WCCGGW	2 cut(s)	157, 302
BsaXI	ACNNNNNCTCC	2 cut(s)	783, 813
Bsc4I	CCNNNNNNNGG	4 cut(s)	135, 216, 438, 595
Bse118I	RCCGGY	3 cut(s)	397, 538, 995
Bse1I	ACTGG	3 cut(s)	600, 1161, 1338
Bse8I	GATNNNNATC	1 cut(s)	644
BseAI	TCCGGA	1 cut(s)	157
BseCI	ATCGAT	2 cut(s)	64, 623
BseDI	CCNNGG	4 cut(s)	589, 630, 930, 970
BseJI	GATNNNNATC	1 cut(s)	644
BseLI	CCNNNNNNNGG	4 cut(s)	135, 216, 438, 595
BseMII	CTCAG	1 cut(s)	741
BseNI	ACTGG	3 cut(s)	600, 1161, 1338
BseX3I	CGGCCG	2 cut(s)	457, 540
BseXI	GCAGC	1 cut(s)	766
BseYI	CCCAGC	1 cut(s)	1308
BsgI	GTGCAG	1 cut(s)	298
Bsh1285I	CGRYCG	3 cut(s)	303, 460, 543
BshFI	GGCC	7 cut(s)	171, 459, 483, 542, 629, 872, 957
BshVI	ATCGAT	2 cut(s)	64, 623
BsiEI	CGRYCG	3 cut(s)	303, 460, 543
BsiHKAI	GWGCWC	1 cut(s)	167
BslFI	GGGAC	2 cut(s)	208, 812
BslI	CCNNNNNNNGG	4 cut(s)	135, 216, 438, 595
BsmAI	GTCTC	2 cut(s)	260, 656
BsmBI	CGTCTC	1 cut(s)	260
BsmFI	GGGAC	2 cut(s)	208, 812
BsmI	GAATGC	2 cut(s)	94, 139
BsnI	GGCC	7 cut(s)	171, 459, 483, 542, 629, 872, 957
Bsp1286I	GDGCHC	1 cut(s)	167
Bsp13I	TCCGGA	1 cut(s)	157
Bsp143I	GATC	7 cut(s)	346, 357, 441, 490, 583, 620, 639
Bsp19I	CCATGG	1 cut(s)	970
BspACI	CCGC	6 cut(s)	92, 210, 274, 768, 868, 1128
BspANI	GGCC	7 cut(s)	171, 459, 483, 542, 629, 872, 957
BspCNI	CTCAG	1 cut(s)	742
BspDI	ATCGAT	2 cut(s)	64, 623
BspEI	TCCGGA	1 cut(s)	157
BspLI	GGNNCC	3 cut(s)	297, 443, 937
BspPI	GGATC	2 cut(s)	436, 449
BsrFI	RCCGGY	3 cut(s)	397, 538, 995
BsrI	ACTGG	3 cut(s)	600, 1161, 1338
BssAI	RCCGGY	3 cut(s)	397, 538, 995
BssECI	CCNNGG	4 cut(s)	589, 630, 930, 970
BssMI	GATC	7 cut(s)	346, 357, 441, 490, 583, 620, 639
BssT1I	CCWWGG	4 cut(s)	589, 630, 930, 970
Bst4CI	ACNGT	3 cut(s)	314, 433, 615
Bst6I	CTCTTC	3 cut(s)	582, 594, 630
BstAPI	GCANNNNNTGC	1 cut(s)	776
BstC8I	GCNNGC	1 cut(s)	870
BstDEI	CTNAG	2 cut(s)	466, 750
BstDSI	CCRYGG	1 cut(s)	970
BstEII	GGTNACC	1 cut(s)	754
BstH2I	RGCGCY	1 cut(s)	404
BstHHI	GCGC	2 cut(s)	61, 403
BstKTI	GATC	7 cut(s)	349, 360, 444, 493, 586, 623, 642
BstMAI	GTCTC	2 cut(s)	260, 656
BstMBI	GATC	7 cut(s)	346, 357, 441, 490, 583, 620, 639
BstMCI	CGRYCG	3 cut(s)	303, 460, 543
BstMWI	GCNNNNNNNGC	1 cut(s)	776
BstPI	GGTNACC	1 cut(s)	754
BstSCI	CCNGG	1 cut(s)	134
BstSFI	CTRYAG	1 cut(s)	505
BstV1I	GCAGC	1 cut(s)	766
BstV2I	GAAGAC	2 cut(s)	427, 907
BstX2I	RGATCY	1 cut(s)	441
BstYI	RGATCY	1 cut(s)	441
BstZI	CGGCCG	2 cut(s)	457, 540
Bsu15I	ATCGAT	2 cut(s)	64, 623
BsuRI	GGCC	7 cut(s)	171, 459, 483, 542, 629, 872, 957
BsuTUI	ATCGAT	2 cut(s)	64, 623
BtgI	CCRYGG	1 cut(s)	970
BtsIMutI	CAGTG	1 cut(s)	770
Cac8I	GCNNGC	1 cut(s)	870
CfoI	GCGC	2 cut(s)	61, 403
Cfr10I	RCCGGY	3 cut(s)	397, 538, 995
Cfr13I	GGNCC	3 cut(s)	295, 481, 870
ClaI	ATCGAT	2 cut(s)	64, 623
Csp6I	GTAC	2 cut(s)	476, 1102
CviAII	CATG	4 cut(s)	857, 971, 1171, 1365
CviQI	GTAC	2 cut(s)	476, 1102
DdeI	CTNAG	2 cut(s)	466, 750
DpnI	GATC	7 cut(s)	348, 359, 443, 492, 585, 622, 641
DpnII	GATC	7 cut(s)	346, 357, 441, 490, 583, 620, 639
EaeI	YGGCCR	5 cut(s)	169, 457, 540, 627, 955
EagI	CGGCCG	2 cut(s)	457, 540
Eam1104I	CTCTTC	3 cut(s)	582, 594, 630
EarI	CTCTTC	3 cut(s)	582, 594, 630
EciI	GGCGGA	1 cut(s)	199
Ecl136II	GAGCTC	1 cut(s)	165
EclXI	CGGCCG	2 cut(s)	457, 540
Eco130I	CCWWGG	4 cut(s)	589, 630, 930, 970
Eco24I	GRGCYC	1 cut(s)	167
Eco47I	GGWCC	1 cut(s)	295
Eco52I	CGGCCG	2 cut(s)	457, 540
Eco53kI	GAGCTC	1 cut(s)	165
Eco91I	GGTNACC	1 cut(s)	754
EcoICRI	GAGCTC	1 cut(s)	165
EcoO65I	GGTNACC	1 cut(s)	754
EcoT14I	CCWWGG	4 cut(s)	589, 630, 930, 970
EcoT38I	GRGCYC	1 cut(s)	167
ErhI	CCWWGG	4 cut(s)	589, 630, 930, 970
Esp3I	CGTCTC	1 cut(s)	260
FaeI	CATG	4 cut(s)	860, 974, 1174, 1368
FalI	AAGNNNNNCTT	2 cut(s)	1071, 1103
FaqI	GGGAC	2 cut(s)	208, 812
FatI	CATG	4 cut(s)	856, 970, 1170, 1364
FauI	CCCGC	1 cut(s)	861
FbaI	TGATCA	1 cut(s)	346
Fnu4HI	GCNGC	1 cut(s)	780
FriOI	GRGCYC	1 cut(s)	167
Fsp4HI	GCNGC	1 cut(s)	780
FspBI	CTAG	1 cut(s)	618
GlaI	GCGC	2 cut(s)	60, 402
GluI	GCNGC	1 cut(s)	780
GsaI	CCCAGC	1 cut(s)	1312
HaeII	RGCGCY	1 cut(s)	404
HaeIII	GGCC	7 cut(s)	171, 459, 483, 542, 629, 872, 957
HhaI	GCGC	2 cut(s)	61, 403
Hin1II	CATG	4 cut(s)	860, 974, 1174, 1368
Hin6I	GCGC	2 cut(s)	59, 401
HinP1I	GCGC	2 cut(s)	59, 401
HincII	GTYRAC	2 cut(s)	6, 427
HindII	GTYRAC	2 cut(s)	6, 427
HindIII	AAGCTT	1 cut(s)	463
HinfI	GANTC	4 cut(s)	24, 247, 602, 731
HphI	GGTGA	6 cut(s)	387, 526, 528, 603, 740, 1310
Hpy166II	GTNNAC	3 cut(s)	6, 427, 1102
Hpy8I	GTNNAC	3 cut(s)	6, 427, 1102
Hpy99I	CGWCG	2 cut(s)	186, 489
HpyAV	CCTTC	3 cut(s)	50, 812, 1225
HpyCH4III	ACNGT	3 cut(s)	314, 433, 615
HpyCH4V	TGCA	6 cut(s)	279, 739, 895, 901, 980, 1364
HpyF10VI	GCNNNNNNNGC	1 cut(s)	776
HpyF3I	CTNAG	2 cut(s)	466, 750
Hsp92II	CATG	4 cut(s)	860, 974, 1174, 1368
HspAI	GCGC	2 cut(s)	59, 401
Kpn2I	TCCGGA	1 cut(s)	157
Ksp22I	TGATCA	1 cut(s)	346
Kzo9I	GATC	7 cut(s)	346, 357, 441, 490, 583, 620, 639
LmnI	GCTCC	2 cut(s)	170, 1198
Lsp1109I	GCAGC	1 cut(s)	766
LweI	GCATC	1 cut(s)	70
MaeI	CTAG	1 cut(s)	618
MaeIII	GTNAC	2 cut(s)	754, 1378
MalI	GATC	7 cut(s)	348, 359, 443, 492, 585, 622, 641
MboI	GATC	7 cut(s)	346, 357, 441, 490, 583, 620, 639
MflI	RGATCY	1 cut(s)	441
MhlI	GDGCHC	1 cut(s)	167
MlsI	TGGCCA	1 cut(s)	629
MluCI	AATT	9 cut(s)	111, 661, 794, 807, 963, 1036, 1261, 1284, 1359
MluNI	TGGCCA	1 cut(s)	629
MlyI	GAGTC	1 cut(s)	611
MmeI	TCCRAC	4 cut(s)	168, 342, 1056, 1302
Mox20I	TGGCCA	1 cut(s)	629
MroI	TCCGGA	1 cut(s)	157
MroXI	GAANNNNTTC	2 cut(s)	521, 1083
MscI	TGGCCA	1 cut(s)	629
MseI	TTAA	2 cut(s)	1023, 1293
MslI	CAYNNNNRTG	1 cut(s)	975
Msp20I	TGGCCA	1 cut(s)	629
MspR9I	CCNGG	1 cut(s)	136
Mva1269I	GAATGC	2 cut(s)	94, 139
MwoI	GCNNNNNNNGC	1 cut(s)	776
NciI	CCSGG	1 cut(s)	136
NcoI	CCATGG	1 cut(s)	970
NdeII	GATC	7 cut(s)	346, 357, 441, 490, 583, 620, 639
NlaIII	CATG	4 cut(s)	860, 974, 1174, 1368
NlaIV	GGNNCC	3 cut(s)	297, 443, 937
NmeAIII	GCCGAG	1 cut(s)	435
PcsI	WCGNNNNNNNCGW	1 cut(s)	429
PctI	GAATGC	2 cut(s)	94, 139
PdmI	GAANNNNTTC	2 cut(s)	521, 1083
PfeI	GAWTC	3 cut(s)	24, 247, 731
PflMI	CCANNNNNTGG	1 cut(s)	595
PkrI	GCNGC	1 cut(s)	781
PleI	GAGTC	1 cut(s)	610
PpsI	GAGTC	1 cut(s)	610
Psp124BI	GAGCTC	1 cut(s)	167
PspEI	GGTNACC	1 cut(s)	754
PspFI	CCCAGC	1 cut(s)	1308
PspN4I	GGNNCC	3 cut(s)	297, 443, 937
PspPI	GGNCC	3 cut(s)	295, 481, 870
PsrI	GAACNNNNNNTAC	2 cut(s)	1323, 1355
PsuI	RGATCY	1 cut(s)	441
RsaI	GTAC	2 cut(s)	477, 1103
RsaNI	GTAC	2 cut(s)	476, 1102
RseI	CAYNNNNRTG	1 cut(s)	975
SacI	GAGCTC	1 cut(s)	167
SaqAI	TTAA	2 cut(s)	1023, 1293
SatI	GCNGC	1 cut(s)	780
Sau3AI	GATC	7 cut(s)	346, 357, 441, 490, 583, 620, 639
Sau96I	GGNCC	3 cut(s)	295, 481, 870
SchI	GAGTC	1 cut(s)	611
ScrFI	CCNGG	1 cut(s)	136
SduI	GDGCHC	1 cut(s)	167
SfaNI	GCATC	1 cut(s)	70
SfcI	CTRYAG	1 cut(s)	505
SgrAI	CRCCGGYG	1 cut(s)	397
SinI	GGWCC	1 cut(s)	295
SmiMI	CAYNNNNRTG	1 cut(s)	975
Sse9I	AATT	9 cut(s)	111, 661, 794, 807, 963, 1036, 1261, 1284, 1359
SsiI	CCGC	6 cut(s)	92, 210, 274, 768, 868, 1128
SspMI	CTAG	1 cut(s)	618
SstI	GAGCTC	1 cut(s)	167
StyD4I	CCNGG	1 cut(s)	134
StyI	CCWWGG	4 cut(s)	589, 630, 930, 970
TaaI	ACNGT	3 cut(s)	314, 433, 615
TaqI	TCGA	4 cut(s)	64, 335, 580, 623
TasI	AATT	9 cut(s)	111, 661, 794, 807, 963, 1036, 1261, 1284, 1359
TfiI	GAWTC	3 cut(s)	24, 247, 731
Tru1I	TTAA	2 cut(s)	1023, 1293
Tru9I	TTAA	2 cut(s)	1023, 1293
TscAI	CASTG	1 cut(s)	777
TseI	GCWGC	1 cut(s)	779
TspDTI	ATGAA	2 cut(s)	835, 1159
TspGWI	ACGGA	1 cut(s)	242
TspRI	CASTG	1 cut(s)	777
Van91I	CCANNNNNTGG	1 cut(s)	595
VpaK11BI	GGWCC	1 cut(s)	295
XapI	RAATTY	2 cut(s)	111, 661
XbaI	TCTAGA	1 cut(s)	617
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1168
XmnI	GAANNNNTTC	2 cut(s)	521, 1083
XspI	CTAG	1 cut(s)	618

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.