Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0019349

Physical Location & Seq

Genomic Coordinates Forward (+)

25488446 .. 25491717

Gene Structure 3272 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00020920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 219 bp

ATGTTTACAGAGAAATACAGGCTTTACTTCCGCAGTCATTTTATCCAAGGGTTGGAAGTAGTTCTTTTGTTCATAGTGTACCTTGCTTATGGATATGATGATGGCAGTGCTCTATCATACATTCTTCTTACAATGACCAGTTGGTTCATGGCACTTTCTTGGCTTTTTGCTCCCTATTTGTTCAACCCATGCCCATCTGGGTTTGAGTGGCAGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000278 GO:0000280 GO:0001558 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0006996 GO:0007049 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009556 GO:0009846 GO:0009856 GO:0009987 GO:0010769 GO:0012505 GO:0016020 GO:0016043 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0022603 GO:0022604 GO:0032501 GO:0032502 GO:0032504 GO:0033036 GO:0033037 GO:0034293 GO:0040007 GO:0040008 GO:0042545 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043934 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0044706 GO:0045229 GO:0045595 GO:0048229 GO:0048232 GO:0048236 GO:0048285 GO:0048589 GO:0048609 GO:0048638 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051179 GO:0051239 GO:0051321 GO:0051510 GO:0051641 GO:0051704 GO:0052386 GO:0052543 GO:0052545 GO:0055047 GO:0060284 GO:0065007 GO:0070727 GO:0071554 GO:0071555 GO:0071840 GO:0071944 GO:0080092 GO:0140014 GO:1903046 GO:1903047 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKS1_dom1 Glucan_synthase

Protein Analysis

72

Amino Acids

8.58

Weight (kDa)

4.9

Isoelectric Point (pI)

23.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glucan_synthase	PF02364	2 - 71	2.4e-08	1,3-beta-glucan synthase component

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019349)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0351491 RchiOBHm_Chr5g0026011
rosa_multiflora	Rmu_sc0001509.1_g000002
rosa_roxburghii	Rroxscaffold_1G00020920 Rroxscaffold_2G00117850 Rroxscaffold_5G00350950
rosa_samantha	Rh3CG223200 Rh4DG102400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	52
AciI	CCGC	1 cut(s)	31
AfaI	GTAC	1 cut(s)	80
AfiI	CCNNNNNNNGG	1 cut(s)	52
AgsI	TTSAA	1 cut(s)	184
Alw21I	GWGCWC	1 cut(s)	112
Asp700I	GAANNNNTTC	1 cut(s)	60
Bbv12I	GWGCWC	1 cut(s)	112
BccI	CCATC	2 cut(s)	95, 202
BsaJI	CCNNGG	1 cut(s)	46
Bsc4I	CCNNNNNNNGG	1 cut(s)	52
Bse1I	ACTGG	1 cut(s)	138
BseDI	CCNNGG	1 cut(s)	46
BseLI	CCNNNNNNNGG	1 cut(s)	52
BseNI	ACTGG	1 cut(s)	138
BsiHKAI	GWGCWC	1 cut(s)	112
BslI	CCNNNNNNNGG	1 cut(s)	52
Bsp1286I	GDGCHC	1 cut(s)	112
BspACI	CCGC	1 cut(s)	31
BsrI	ACTGG	1 cut(s)	138
BssECI	CCNNGG	1 cut(s)	46
BssT1I	CCWWGG	1 cut(s)	46
BtsI	GCAGTG	1 cut(s)	112
BtsIMutI	CAGTG	1 cut(s)	112
Csp6I	GTAC	1 cut(s)	79
CviAII	CATG	2 cut(s)	148, 189
CviJI	RGCY	2 cut(s)	22, 163
CviKI_1	RGCY	2 cut(s)	22, 163
CviQI	GTAC	1 cut(s)	79
Eco130I	CCWWGG	1 cut(s)	46
EcoT14I	CCWWGG	1 cut(s)	46
ErhI	CCWWGG	1 cut(s)	46
FaeI	CATG	2 cut(s)	151, 192
FaiI	YATR	6 cut(s)	74, 90, 96, 118, 149, 190
FalI	AAGNNNNNCTT	2 cut(s)	48, 80
FatI	CATG	2 cut(s)	147, 188
Hin1II	CATG	2 cut(s)	151, 192
Hpy166II	GTNNAC	2 cut(s)	6, 79
Hpy8I	GTNNAC	2 cut(s)	6, 79
Hsp92II	CATG	2 cut(s)	151, 192
LmnI	GCTCC	1 cut(s)	175
LpnPI	CCDG	3 cut(s)	4, 151, 183
MboII	GAAGA	1 cut(s)	116
MhlI	GDGCHC	1 cut(s)	112
MmeI	TCCRAC	1 cut(s)	33
MroXI	GAANNNNTTC	1 cut(s)	60
NlaIII	CATG	2 cut(s)	151, 192
PdmI	GAANNNNTTC	1 cut(s)	60
PflMI	CCANNNNNTGG	1 cut(s)	52
RsaI	GTAC	1 cut(s)	80
RsaNI	GTAC	1 cut(s)	79
SduI	GDGCHC	1 cut(s)	112
SetI	ASST	1 cut(s)	84
SgeI	CNNG	8 cut(s)	31, 59, 95, 150, 160, 171, 201, 210
SsiI	CCGC	1 cut(s)	31
StyI	CCWWGG	1 cut(s)	46
TscAI	CASTG	1 cut(s)	112
TspDTI	ATGAA	2 cut(s)	61, 136
TspRI	CASTG	1 cut(s)	112
Van91I	CCANNNNNTGG	1 cut(s)	52
XcmI	CCANNNNNNNNNTGG	1 cut(s)	145
XmnI	GAANNNNTTC	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.