Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0019349

Physical Location & Seq

Genomic Coordinates Forward (+)

20814301 .. 20816552

Gene Structure 2252 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG223200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGAATATCTTCGTAGAAAGGGCAGAGCAAGCACTATCTGGGGTTGGTGAATCCTTGCAAAATGTGGCTGAGGTAACCAAGAATACCGCACTGACTGCTGCTCTAAATACACAATTCCTCCTTCAAATTGGTATCTTTACTGCTGTCCCGATGATTTTAGGCTTCATCTTGGAACAGGGTTTCCTGCGGGCCATAGTAAGTTTCCTCACAATGCAGTTGCAACTTTGTTCTGTCTTCTTCACATTCTCCTTGGGAACCAAAACACATTATTTTGGCCGGACAATTCTCCATGGTGGTGCAAAGTATCAAGCAACCGGCAGGGGATTTGTAGTCCGGCATATTAAGTTTATAGAGAATTACAGGCTTTACTCCCGTAGTCATTTTATCAAAGGGTGTGATTCCTGTTCTTTCTCTTCACTCTTCTCTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000278 GO:0000280 GO:0001558 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0006996 GO:0007049 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009556 GO:0009846 GO:0009856 GO:0009987 GO:0010769 GO:0012505 GO:0016020 GO:0016043 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0022603 GO:0022604 GO:0032501 GO:0032502 GO:0032504 GO:0033036 GO:0033037 GO:0034293 GO:0040007 GO:0040008 GO:0042545 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043934 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0044706 GO:0045229 GO:0045595 GO:0048229 GO:0048232 GO:0048236 GO:0048285 GO:0048589 GO:0048609 GO:0048638 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051179 GO:0051239 GO:0051321 GO:0051510 GO:0051641 GO:0051704 GO:0052386 GO:0052543 GO:0052545 GO:0055047 GO:0060284 GO:0065007 GO:0070727 GO:0071554 GO:0071555 GO:0071840 GO:0071944 GO:0080092 GO:0140014 GO:1903046 GO:1903047 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKS1_dom1 Glucan_synthase

Protein Analysis

143

Amino Acids

15.98

Weight (kDa)

9.41

Isoelectric Point (pI)

40.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glucan_synthase	PF02364	23 - 133	7.9e-29	1,3-beta-glucan synthase component

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0019349)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0351491 RchiOBHm_Chr5g0026011
rosa_multiflora	Rmu_sc0001509.1_g000002
rosa_roxburghii	Rroxscaffold_1G00020920 Rroxscaffold_2G00117850 Rroxscaffold_5G00350950
rosa_samantha	Rh3CG223200 Rh4DG102400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	87, 187
AcoI	YGGCCR	1 cut(s)	274
AgsI	TTSAA	1 cut(s)	125
AloI	GAACNNNNNNTCC	2 cut(s)	165, 197
AoxI	GGCC	2 cut(s)	189, 274
ApeKI	GCWGC	1 cut(s)	98
Asp700I	GAANNNNTTC	1 cut(s)	8
AspS9I	GGNCC	1 cut(s)	189
AsuHPI	GGTGA	1 cut(s)	59
BbsI	GAAGAC	1 cut(s)	226
BbvCI	CCTCAGC	1 cut(s)	69
BbvI	GCAGC	1 cut(s)	85
BisI	GCNGC	1 cut(s)	99
BlsI	GCNGC	1 cut(s)	100
BmgT120I	GGNCC	1 cut(s)	189
BmiI	GGNNCC	1 cut(s)	256
BpiI	GAAGAC	1 cut(s)	226
Bpu10I	CCTNAGC	1 cut(s)	69
BsaJI	CCNNGG	2 cut(s)	249, 289
BsaXI	ACNNNNNCTCC	2 cut(s)	102, 132
Bse118I	RCCGGY	1 cut(s)	314
BseDI	CCNNGG	2 cut(s)	249, 289
BseMII	CTCAG	1 cut(s)	60
BseXI	GCAGC	1 cut(s)	85
BshFI	GGCC	2 cut(s)	191, 276
BsiSI	CCGG	3 cut(s)	277, 315, 334
BslFI	GGGAC	1 cut(s)	131
BsmFI	GGGAC	1 cut(s)	131
BsnI	GGCC	2 cut(s)	191, 276
Bsp19I	CCATGG	1 cut(s)	289
BspACI	CCGC	2 cut(s)	87, 187
BspANI	GGCC	2 cut(s)	191, 276
BspCNI	CTCAG	1 cut(s)	61
BspLI	GGNNCC	1 cut(s)	256
BsrFI	RCCGGY	1 cut(s)	314
BssAI	RCCGGY	1 cut(s)	314
BssECI	CCNNGG	2 cut(s)	249, 289
BssT1I	CCWWGG	2 cut(s)	249, 289
Bst6I	CTCTTC	2 cut(s)	418, 425
BstAPI	GCANNNNNTGC	1 cut(s)	95
BstC8I	GCNNGC	2 cut(s)	30, 189
BstDEI	CTNAG	1 cut(s)	69
BstDSI	CCRYGG	1 cut(s)	289
BstEII	GGTNACC	1 cut(s)	73
BstMWI	GCNNNNNNNGC	2 cut(s)	29, 95
BstPI	GGTNACC	1 cut(s)	73
BstV1I	GCAGC	1 cut(s)	85
BstV2I	GAAGAC	1 cut(s)	226
BsuRI	GGCC	2 cut(s)	191, 276
BtgI	CCRYGG	1 cut(s)	289
BtsIMutI	CAGTG	1 cut(s)	89
Cac8I	GCNNGC	2 cut(s)	30, 189
Cfr10I	RCCGGY	1 cut(s)	314
Cfr13I	GGNCC	1 cut(s)	189
CviAII	CATG	1 cut(s)	290
CviJI	RGCY	5 cut(s)	68, 162, 191, 276, 364
CviKI_1	RGCY	5 cut(s)	68, 162, 191, 276, 364
DdeI	CTNAG	1 cut(s)	69
EaeI	YGGCCR	1 cut(s)	274
Eam1104I	CTCTTC	2 cut(s)	418, 425
EarI	CTCTTC	2 cut(s)	418, 425
Eco130I	CCWWGG	2 cut(s)	249, 289
Eco91I	GGTNACC	1 cut(s)	73
EcoO65I	GGTNACC	1 cut(s)	73
EcoT14I	CCWWGG	2 cut(s)	249, 289
ErhI	CCWWGG	2 cut(s)	249, 289
FaeI	CATG	1 cut(s)	293
FaiI	YATR	4 cut(s)	194, 291, 339, 350
FaqI	GGGAC	1 cut(s)	131
FatI	CATG	1 cut(s)	289
FauI	CCCGC	1 cut(s)	180
Fnu4HI	GCNGC	1 cut(s)	99
Fsp4HI	GCNGC	1 cut(s)	99
GluI	GCNGC	1 cut(s)	99
HaeIII	GGCC	2 cut(s)	191, 276
HapII	CCGG	3 cut(s)	277, 315, 334
Hin1II	CATG	1 cut(s)	293
HinfI	GANTC	2 cut(s)	50, 398
HpaII	CCGG	3 cut(s)	277, 315, 334
HphI	GGTGA	1 cut(s)	59
Hpy188III	TCNNGA	1 cut(s)	148
HpyAV	CCTTC	1 cut(s)	131
HpyCH4V	TGCA	4 cut(s)	58, 214, 220, 299
HpyF10VI	GCNNNNNNNGC	2 cut(s)	29, 95
HpyF3I	CTNAG	1 cut(s)	69
Hsp92II	CATG	1 cut(s)	293
LpnPI	CCDG	9 cut(s)	24, 161, 197, 290, 304, 328, 346, 347, 415
Lsp1109I	GCAGC	1 cut(s)	85
MaeIII	GTNAC	1 cut(s)	73
MboII	GAAGA	4 cut(s)	226, 229, 405, 412
MluCI	AATT	4 cut(s)	113, 126, 282, 355
MnlI	CCTC	3 cut(s)	64, 128, 215
MroXI	GAANNNNTTC	1 cut(s)	8
MseI	TTAA	1 cut(s)	342
MslI	CAYNNNNRTG	1 cut(s)	294
MspI	CCGG	3 cut(s)	277, 315, 334
MwoI	GCNNNNNNNGC	2 cut(s)	29, 95
NcoI	CCATGG	1 cut(s)	289
NlaIII	CATG	1 cut(s)	293
NlaIV	GGNNCC	1 cut(s)	256
PdmI	GAANNNNTTC	1 cut(s)	8
PfeI	GAWTC	2 cut(s)	50, 398
PkrI	GCNGC	1 cut(s)	100
PspEI	GGTNACC	1 cut(s)	73
PspN4I	GGNNCC	1 cut(s)	256
PspPI	GGNCC	1 cut(s)	189
RseI	CAYNNNNRTG	1 cut(s)	294
SaqAI	TTAA	1 cut(s)	342
SatI	GCNGC	1 cut(s)	99
Sau96I	GGNCC	1 cut(s)	189
SetI	ASST	1 cut(s)	75
SmiMI	CAYNNNNRTG	1 cut(s)	294
Sse9I	AATT	4 cut(s)	113, 126, 282, 355
SsiI	CCGC	2 cut(s)	87, 187
StyI	CCWWGG	2 cut(s)	249, 289
TasI	AATT	4 cut(s)	113, 126, 282, 355
TfiI	GAWTC	2 cut(s)	50, 398
Tru1I	TTAA	1 cut(s)	342
Tru9I	TTAA	1 cut(s)	342
TscAI	CASTG	1 cut(s)	96
TseI	GCWGC	1 cut(s)	98
TspDTI	ATGAA	2 cut(s)	17, 154
TspRI	CASTG	1 cut(s)	96
XmnI	GAANNNNTTC	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.