Rmu_sc0001605.1_g000016

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001605.1
OG0023075
Physical Location & Seq
Forward (+)
51111 .. 52566
1456 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001605.1_g000016.1.cds

Sequence Viewer

Length: 777 bp
atgggcaggcctgggcccggaaagaaagtcaccggattccggtcactggtcgccagagttcctttaccggtcgtcggagtcagcggccggccattgaataccctgcaagaacacaagaatggacaacctgtcaccgagcaagagctaattgagaaaactctctccaccttctccatttcagccattgtggcattaaagcaataccgtactgaagtcaatgctggacggatcaccaggtttcatcagcttatcaatgttatatctgtagctgagaaacatgataacatactggtgaggaattataattcaaggcccattggaactaagagcattcaagaggcgaattataatgcacccaaaggagggcgcaaggagcggtaccctaagaatgggggacatgagggacgtatgggcccatataacgccctaaccaggaaggaaacaacaagttttgtgtggatacacgtggtggtaatgccacacgtgagagaggaggtcgtggtatccctaccggtattggtggcgtcatgggtcgtggtggtggcaccaacccggcctcctaaggaacgcccacaacgtgcacctagtgagcattggttcaagcaatgcaaggcaagcgagcaactagcttcaagatacagggcatacagggacctgagggagcaagaagtgtaccttgcagaagaagaagaagaaaatggtggagacgtcaatctcaccatagaatatttcaaagctgaagatgaagtgcacaacaatgctgcagactttgattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

258

Amino Acids

29.15

Weight (kDa)

9.21

Isoelectric Point (pI)

47.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0023075)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0001605.1_g000016 Rmu_sc0004208.1_g000017 Rmu_sc0007681.1_g000012 Rmu_sc0029766.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 303, 348
AatII GACGTC 1 cut(s) 711
Acc65I GGTACC 1 cut(s) 378
AccB1I GGYRCC 2 cut(s) 378, 544
AccBSI CCGCTC 1 cut(s) 376
AciI CCGC 2 cut(s) 84, 376
AclWI GGATC 1 cut(s) 236
AcoI YGGCCR 2 cut(s) 85, 89
AcuI CTGAAG 2 cut(s) 231, 759
AcvI CACGTG 2 cut(s) 466, 484
AcyI GRCGYC 2 cut(s) 524, 708
AdeI CACNNNGTG 3 cut(s) 469, 578, 587
AfaI GTAC 3 cut(s) 208, 380, 674
AfiI CCNNNNNNNGG 8 cut(s) 17, 39, 46, 74, 362, 363, 389, 432
AflIII ACRYGT 2 cut(s) 463, 481
AgeI ACCGGT 2 cut(s) 67, 511
AgsI TTSAA 6 cut(s) 97, 309, 335, 601, 633, 733
AhdI GACNNNNNGTC 1 cut(s) 128
AjnI CCWGG 3 cut(s) 10, 233, 431
AluBI AGCT 5 cut(s) 145, 247, 269, 629, 737
AluI AGCT 5 cut(s) 145, 247, 269, 629, 737
Alw21I GWGCWC 2 cut(s) 583, 753
Alw26I GTCTC 1 cut(s) 699
Alw44I GTGCAC 2 cut(s) 579, 749
AlwI GGATC 1 cut(s) 236
AoxI GGCC 7 cut(s) 8, 14, 85, 89, 311, 412, 554
ApaI GGGCCC 2 cut(s) 18, 416
ApaLI GTGCAC 2 cut(s) 579, 749
ApeKI GCWGC 1 cut(s) 761
AsiGI ACCGGT 2 cut(s) 67, 511
Asp718I GGTACC 1 cut(s) 378
AspLEI GCGC 1 cut(s) 369
AspS9I GGNCC 6 cut(s) 14, 15, 312, 412, 413, 652
AsuC2I CCSGG 2 cut(s) 18, 553
AsuHPI GGTGA 5 cut(s) 22, 124, 223, 304, 709
AvaII GGWCC 1 cut(s) 652
AxyI CCTNAGG 2 cut(s) 561, 656
BaeGI GKGCMC 4 cut(s) 18, 416, 583, 753
BanI GGYRCC 2 cut(s) 378, 544
BanII GRGCYC 2 cut(s) 18, 416
BbrPI CACGTG 2 cut(s) 466, 484
Bbv12I GWGCWC 2 cut(s) 583, 753
BbvI GCAGC 1 cut(s) 748
BciT130I CCWGG 3 cut(s) 12, 235, 433
BciVI GTATCC 2 cut(s) 453, 514
BcnI CCSGG 2 cut(s) 18, 553
BcoDI GTCTC 1 cut(s) 699
BfaI CTAG 2 cut(s) 585, 626
BfmI CTRYAG 2 cut(s) 264, 762
BfuI GTATCC 2 cut(s) 453, 514
BglI GCCNNNNNGGC 1 cut(s) 188
BisI GCNGC 2 cut(s) 85, 762
BlsI GCNGC 2 cut(s) 86, 763
Bme1390I CCNGG 5 cut(s) 12, 18, 235, 433, 553
Bme18I GGWCC 1 cut(s) 652
BmeRI GACNNNNNGTC 1 cut(s) 128
BmgT120I GGNCC 6 cut(s) 14, 15, 312, 412, 413, 652
BmiI GGNNCC 5 cut(s) 16, 380, 414, 546, 653
BmrFI CCNGG 5 cut(s) 12, 18, 235, 433, 553
BpuMI CCSGG 2 cut(s) 18, 553
BsaAI YACGTR 2 cut(s) 466, 484
BsaHI GRCGYC 2 cut(s) 524, 708
BsaJI CCNNGG 1 cut(s) 11
BsaWI WCCGGW 4 cut(s) 32, 39, 67, 511
BsaXI ACNNNNNCTCC 2 cut(s) 541, 571
Bsc4I CCNNNNNNNGG 8 cut(s) 17, 39, 46, 74, 362, 363, 389, 432
Bse118I RCCGGY 3 cut(s) 67, 87, 511
Bse1I ACTGG 2 cut(s) 51, 294
Bse21I CCTNAGG 2 cut(s) 561, 656
Bse3DI GCAATG 1 cut(s) 611
BseBI CCWGG 3 cut(s) 12, 235, 433
BseDI CCNNGG 1 cut(s) 11
BseLI CCNNNNNNNGG 8 cut(s) 17, 39, 46, 74, 362, 363, 389, 432
BseMI GCAATG 1 cut(s) 611
BseMII CTCAG 2 cut(s) 261, 647
BseNI ACTGG 2 cut(s) 51, 294
BseRI GAGGAG 1 cut(s) 506
BseSI GKGCMC 4 cut(s) 18, 416, 583, 753
BseX3I CGGCCG 1 cut(s) 85
BseXI GCAGC 1 cut(s) 748
Bsh1285I CGRYCG 2 cut(s) 72, 88
BshFI GGCC 7 cut(s) 10, 16, 87, 91, 313, 414, 556
BshNI GGYRCC 2 cut(s) 378, 544
BshTI ACCGGT 2 cut(s) 67, 511
BsiEI CGRYCG 2 cut(s) 72, 88
BsiHKAI GWGCWC 2 cut(s) 583, 753
BsiSI CCGG 7 cut(s) 18, 33, 40, 68, 88, 512, 553
BslFI GGGAC 3 cut(s) 408, 417, 665
BslI CCNNNNNNNGG 8 cut(s) 17, 39, 46, 74, 362, 363, 389, 432
BsmAI GTCTC 1 cut(s) 699
BsmBI CGTCTC 1 cut(s) 699
BsmFI GGGAC 3 cut(s) 408, 417, 665
BsmI GAATGC 1 cut(s) 330
BsnI GGCC 7 cut(s) 10, 16, 87, 91, 313, 414, 556
Bsp120I GGGCCC 2 cut(s) 14, 412
Bsp1286I GDGCHC 4 cut(s) 18, 416, 583, 753
Bsp143I GATC 1 cut(s) 228
BspACI CCGC 2 cut(s) 84, 376
BspANI GGCC 7 cut(s) 10, 16, 87, 91, 313, 414, 556
BspCNI CTCAG 2 cut(s) 262, 648
BspLI GGNNCC 5 cut(s) 16, 380, 414, 546, 653
BspMAI CTGCAG 1 cut(s) 766
BspPI GGATC 1 cut(s) 236
BspT107I GGYRCC 2 cut(s) 378, 544
BsrBI CCGCTC 1 cut(s) 376
BsrDI GCAATG 1 cut(s) 611
BsrFI RCCGGY 3 cut(s) 67, 87, 511
BsrI ACTGG 2 cut(s) 51, 294
BssAI RCCGGY 3 cut(s) 67, 87, 511
BssECI CCNNGG 1 cut(s) 11
BssMI GATC 1 cut(s) 228
BssNI GRCGYC 2 cut(s) 524, 708
Bst2UI CCWGG 3 cut(s) 12, 235, 433
Bst4CI ACNGT 1 cut(s) 206
BstACI GRCGYC 2 cut(s) 524, 708
BstBAI YACGTR 2 cut(s) 466, 484
BstC8I GCNNGC 4 cut(s) 8, 89, 616, 620
BstDEI CTNAG 5 cut(s) 270, 324, 384, 561, 656
BstHHI GCGC 1 cut(s) 369
BstKTI GATC 1 cut(s) 231
BstMAI GTCTC 1 cut(s) 699
BstMBI GATC 1 cut(s) 228
BstMCI CGRYCG 2 cut(s) 72, 88
BstMWI GCNNNNNNNGC 3 cut(s) 188, 373, 615
BstNI CCWGG 3 cut(s) 12, 235, 433
BstSCI CCNGG 5 cut(s) 10, 16, 233, 431, 551
BstSFI CTRYAG 2 cut(s) 264, 762
BstSLI GKGCMC 4 cut(s) 18, 416, 583, 753
BstV1I GCAGC 1 cut(s) 748
BstZI CGGCCG 1 cut(s) 85
Bsu36I CCTNAGG 2 cut(s) 561, 656
BsuI GTATCC 2 cut(s) 453, 514
BsuRI GGCC 7 cut(s) 10, 16, 87, 91, 313, 414, 556
BtsIMutI CAGTG 1 cut(s) 44
Cac8I GCNNGC 4 cut(s) 8, 89, 616, 620
CfoI GCGC 1 cut(s) 369
Cfr10I RCCGGY 3 cut(s) 67, 87, 511
Cfr13I GGNCC 6 cut(s) 14, 15, 312, 412, 413, 652
CseI GACGC 1 cut(s) 513
CsiI ACCWGGT 1 cut(s) 233
Csp6I GTAC 3 cut(s) 207, 379, 673
CspAI ACCGGT 2 cut(s) 67, 511
CviAII CATG 3 cut(s) 278, 398, 528
CviQI GTAC 3 cut(s) 207, 379, 673
DdeI CTNAG 5 cut(s) 270, 324, 384, 561, 656
DpnI GATC 1 cut(s) 230
DpnII GATC 1 cut(s) 228
DraIII CACNNNGTG 3 cut(s) 469, 578, 587
DriI GACNNNNNGTC 1 cut(s) 128
EaeI YGGCCR 2 cut(s) 85, 89
EagI CGGCCG 1 cut(s) 85
Eam1105I GACNNNNNGTC 1 cut(s) 128
EclXI CGGCCG 1 cut(s) 85
Eco147I AGGCCT 1 cut(s) 10
Eco24I GRGCYC 2 cut(s) 18, 416
Eco47I GGWCC 1 cut(s) 652
Eco52I CGGCCG 1 cut(s) 85
Eco57I CTGAAG 2 cut(s) 231, 759
Eco72I CACGTG 2 cut(s) 466, 484
Eco81I CCTNAGG 2 cut(s) 561, 656
EcoO109I RGGNCCY 1 cut(s) 652
EcoRII CCWGG 3 cut(s) 10, 233, 431
EcoT38I GRGCYC 2 cut(s) 18, 416
Esp3I CGTCTC 1 cut(s) 699
FaeI CATG 3 cut(s) 281, 401, 531
FalI AAGNNNNNCTT 2 cut(s) 660, 692
FaqI GGGAC 3 cut(s) 408, 417, 665
FatI CATG 3 cut(s) 277, 397, 527
Fnu4HI GCNGC 2 cut(s) 85, 762
FriOI GRGCYC 2 cut(s) 18, 416
FseI GGCCGGCC 1 cut(s) 91
Fsp4HI GCNGC 2 cut(s) 85, 762
FspBI CTAG 2 cut(s) 585, 626
GlaI GCGC 1 cut(s) 368
GluI GCNGC 2 cut(s) 85, 762
HaeIII GGCC 7 cut(s) 10, 16, 87, 91, 313, 414, 556
HapII CCGG 7 cut(s) 18, 33, 40, 68, 88, 512, 553
HgaI GACGC 1 cut(s) 513
HhaI GCGC 1 cut(s) 369
Hin1I GRCGYC 2 cut(s) 524, 708
Hin1II CATG 3 cut(s) 281, 401, 531
Hin6I GCGC 1 cut(s) 367
HinP1I GCGC 1 cut(s) 367
HinfI GANTC 2 cut(s) 36, 78
HpaII CCGG 7 cut(s) 18, 33, 40, 68, 88, 512, 553
HphI GGTGA 5 cut(s) 22, 124, 223, 304, 709
Hpy166II GTNNAC 3 cut(s) 581, 673, 751
Hpy188I TCNGA 1 cut(s) 77
Hpy188III TCNNGA 2 cut(s) 335, 633
Hpy8I GTNNAC 3 cut(s) 581, 673, 751
Hpy99I CGWCG 1 cut(s) 77
HpyAV CCTTC 2 cut(s) 178, 430
HpyCH4III ACNGT 1 cut(s) 206
HpyCH4IV ACGT 5 cut(s) 406, 465, 483, 577, 708
HpyCH4V TGCA 7 cut(s) 106, 353, 581, 609, 680, 751, 764
HpyF10VI GCNNNNNNNGC 3 cut(s) 188, 373, 615
HpyF3I CTNAG 5 cut(s) 270, 324, 384, 561, 656
HpySE526I ACGT 5 cut(s) 406, 465, 483, 577, 708
Hsp92I GRCGYC 2 cut(s) 524, 708
Hsp92II CATG 3 cut(s) 281, 401, 531
HspAI GCGC 1 cut(s) 367
KpnI GGTACC 1 cut(s) 382
KroI GCCGGC 1 cut(s) 87
KroNI GCCGGC 1 cut(s) 89
Kzo9I GATC 1 cut(s) 228
LmnI GCTCC 2 cut(s) 373, 661
Lsp1109I GCAGC 1 cut(s) 748
MabI ACCWGGT 1 cut(s) 233
MaeI CTAG 2 cut(s) 585, 626
MaeII ACGT 5 cut(s) 406, 465, 483, 577, 708
MaeIII GTNAC 3 cut(s) 28, 42, 130
MalI GATC 1 cut(s) 230
MbiI CCGCTC 1 cut(s) 376
MboI GATC 1 cut(s) 228
MboII GAAGA 5 cut(s) 695, 698, 701, 704, 752
MhlI GDGCHC 4 cut(s) 18, 416, 583, 753
MluCI AATT 4 cut(s) 147, 298, 304, 343
MlyI GAGTC 1 cut(s) 87
MmeI TCCRAC 1 cut(s) 55
MnlI CCTC 8 cut(s) 288, 331, 356, 394, 484, 487, 567, 651
MroNI GCCGGC 1 cut(s) 87
MseI TTAA 1 cut(s) 194
MslI CAYNNNNRTG 3 cut(s) 117, 290, 756
MspA1I CMGCKG 1 cut(s) 84
MspI CCGG 7 cut(s) 18, 33, 40, 68, 88, 512, 553
MspR9I CCNGG 5 cut(s) 12, 18, 235, 433, 553
Mva1269I GAATGC 1 cut(s) 330
MvaI CCWGG 3 cut(s) 12, 235, 433
MwoI GCNNNNNNNGC 3 cut(s) 188, 373, 615
NaeI GCCGGC 1 cut(s) 89
NciI CCSGG 2 cut(s) 18, 553
NdeII GATC 1 cut(s) 228
NgoMIV GCCGGC 1 cut(s) 87
NlaIII CATG 3 cut(s) 281, 401, 531
NlaIV GGNNCC 5 cut(s) 16, 380, 414, 546, 653
NmuCI GTSAC 3 cut(s) 28, 42, 130
PceI AGGCCT 1 cut(s) 10
PcsI WCGNNNNNNNCGW 1 cut(s) 574
PctI GAATGC 1 cut(s) 330
PdiI GCCGGC 1 cut(s) 89
PfeI GAWTC 1 cut(s) 36
PinAI ACCGGT 2 cut(s) 67, 511
PkrI GCNGC 2 cut(s) 86, 763
PleI GAGTC 1 cut(s) 86
PmaCI CACGTG 2 cut(s) 466, 484
PmlI CACGTG 2 cut(s) 466, 484
PpsI GAGTC 1 cut(s) 86
Ppu21I YACGTR 2 cut(s) 466, 484
PpuMI RGGWCCY 1 cut(s) 652
PsiI TTATAA 2 cut(s) 303, 348
Psp5II RGGWCCY 1 cut(s) 652
Psp6I CCWGG 3 cut(s) 10, 233, 431
PspCI CACGTG 2 cut(s) 466, 484
PspGI CCWGG 3 cut(s) 10, 233, 431
PspN4I GGNNCC 5 cut(s) 16, 380, 414, 546, 653
PspOMI GGGCCC 2 cut(s) 14, 412
PspPI GGNCC 6 cut(s) 14, 15, 312, 412, 413, 652
PspPPI RGGWCCY 1 cut(s) 652
PstI CTGCAG 1 cut(s) 766
RigI GGCCGGCC 1 cut(s) 91
RsaI GTAC 3 cut(s) 208, 380, 674
RsaNI GTAC 3 cut(s) 207, 379, 673
RseI CAYNNNNRTG 3 cut(s) 117, 290, 756
SaqAI TTAA 1 cut(s) 194
SatI GCNGC 2 cut(s) 85, 762
Sau3AI GATC 1 cut(s) 228
Sau96I GGNCC 6 cut(s) 14, 15, 312, 412, 413, 652
SchI GAGTC 1 cut(s) 87
ScrFI CCNGG 5 cut(s) 12, 18, 235, 433, 553
SduI GDGCHC 4 cut(s) 18, 416, 583, 753
SexAI ACCWGGT 1 cut(s) 233
SfcI CTRYAG 2 cut(s) 264, 762
SinI GGWCC 1 cut(s) 652
SmiMI CAYNNNNRTG 3 cut(s) 117, 290, 756
Sse9I AATT 4 cut(s) 147, 298, 304, 343
SseBI AGGCCT 1 cut(s) 10
SsiI CCGC 2 cut(s) 84, 376
SspI AATATT 1 cut(s) 728
SspMI CTAG 2 cut(s) 585, 626
StuI AGGCCT 1 cut(s) 10
StyD4I CCNGG 5 cut(s) 10, 16, 233, 431, 551
TaaI ACNGT 1 cut(s) 206
TaiI ACGT 5 cut(s) 409, 468, 486, 580, 711
TasI AATT 4 cut(s) 147, 298, 304, 343
TauI GCSGC 1 cut(s) 87
TfiI GAWTC 1 cut(s) 36
Tru1I TTAA 1 cut(s) 194
Tru9I TTAA 1 cut(s) 194
TscAI CASTG 1 cut(s) 51
TseFI GTSAC 3 cut(s) 28, 42, 130
TseI GCWGC 1 cut(s) 761
Tsp45I GTSAC 3 cut(s) 28, 42, 130
TspDTI ATGAA 2 cut(s) 230, 759
TspGWI ACGGA 1 cut(s) 241
TspRI CASTG 1 cut(s) 51
VneI GTGCAC 2 cut(s) 579, 749
VpaK11BI GGWCC 1 cut(s) 652
XspI CTAG 2 cut(s) 585, 626
ZraI GACGTC 1 cut(s) 709
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.