Rmu_sc0007681.1_g000012

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007681.1
OG0023075
Physical Location & Seq
Reverse (-)
46624 .. 47241
618 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007681.1_g000012.1.cds

Sequence Viewer

Length: 504 bp
atgtcgaaactgaaactcgactttcctatgcttgattcaactggctcggaacaccacaattgggtcacggatgttgagaaccatctcacttcaaaatggatcctacccataattcaggcaccaaaccctgaactcatatttgagcaagagcattttggtattgtccaggattccatcctccctgacttgaaggttcaatggagcaatctacgattcgctgacttcaagtctgtctctaaatataattcagaagctctactcctcaaaaccatgttggggttttatggacaacccgtcacagagcaagagctaattgagaaaactctctctaccttccccgtctcagcaattttggtatccaagcaatacagtggtgagtacaatgctggacggatcacgaggtttcatcagctaattaatgtcatgtctgtagctgaaaaacatgattacatcctcgtgaagaattataattcaaggcctgtcagaactaagagcgttcaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

167

Amino Acids

19.22

Weight (kDa)

6.59

Isoelectric Point (pI)

41.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0023075)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0001605.1_g000016 Rmu_sc0004208.1_g000017 Rmu_sc0007681.1_g000012 Rmu_sc0029766.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 468
AccB1I GGYRCC 1 cut(s) 118
AclWI GGATC 3 cut(s) 94, 107, 401
AfaI GTAC 1 cut(s) 380
AfiI CCNNNNNNNGG 2 cut(s) 61, 276
AgsI TTSAA 7 cut(s) 39, 93, 190, 197, 226, 474, 500
AhdI GACNNNNNGTC 2 cut(s) 226, 293
AjnI CCWGG 1 cut(s) 165
AluBI AGCT 4 cut(s) 254, 310, 412, 434
AluI AGCT 4 cut(s) 254, 310, 412, 434
Alw26I GTCTC 2 cut(s) 238, 346
AlwI GGATC 3 cut(s) 94, 107, 401
AoxI GGCC 1 cut(s) 476
AseI ATTAAT 1 cut(s) 417
AsuHPI GGTGA 1 cut(s) 386
BamHI GGATCC 1 cut(s) 99
BanI GGYRCC 1 cut(s) 118
BauI CACGAG 2 cut(s) 397, 455
BccI CCATC 2 cut(s) 90, 182
BciT130I CCWGG 1 cut(s) 167
BciVI GTATCC 1 cut(s) 367
BcoDI GTCTC 2 cut(s) 238, 346
BfmI CTRYAG 1 cut(s) 429
BfuI GTATCC 1 cut(s) 367
Bme1390I CCNGG 1 cut(s) 167
BmeRI GACNNNNNGTC 2 cut(s) 226, 293
BmiI GGNNCC 2 cut(s) 101, 120
BmrFI CCNGG 1 cut(s) 167
Bsc4I CCNNNNNNNGG 2 cut(s) 61, 276
Bse1I ACTGG 1 cut(s) 46
BseBI CCWGG 1 cut(s) 167
BseGI GGATG 3 cut(s) 76, 174, 450
BseLI CCNNNNNNNGG 2 cut(s) 61, 276
BseMII CTCAG 1 cut(s) 357
BseNI ACTGG 1 cut(s) 46
BseRI GAGGAG 1 cut(s) 251
BshFI GGCC 1 cut(s) 478
BshNI GGYRCC 1 cut(s) 118
BslI CCNNNNNNNGG 2 cut(s) 61, 276
BsmAI GTCTC 2 cut(s) 238, 346
BsmBI CGTCTC 1 cut(s) 346
BsnI GGCC 1 cut(s) 478
Bsp143I GATC 2 cut(s) 99, 393
BspANI GGCC 1 cut(s) 478
BspCNI CTCAG 1 cut(s) 356
BspLI GGNNCC 2 cut(s) 101, 120
BspPI GGATC 3 cut(s) 94, 107, 401
BspT107I GGYRCC 1 cut(s) 118
BsrI ACTGG 1 cut(s) 46
BssMI GATC 2 cut(s) 99, 393
BssSI CACGAG 2 cut(s) 397, 455
Bst2BI CACGAG 2 cut(s) 397, 455
Bst2UI CCWGG 1 cut(s) 167
Bst4CI ACNGT 1 cut(s) 371
BstDEI CTNAG 2 cut(s) 343, 489
BstF5I GGATG 3 cut(s) 76, 174, 450
BstKTI GATC 2 cut(s) 102, 396
BstMAI GTCTC 2 cut(s) 238, 346
BstMBI GATC 2 cut(s) 99, 393
BstNI CCWGG 1 cut(s) 167
BstSCI CCNGG 1 cut(s) 165
BstSFI CTRYAG 1 cut(s) 429
BstX2I RGATCY 1 cut(s) 99
BstYI RGATCY 1 cut(s) 99
BsuI GTATCC 1 cut(s) 367
BsuRI GGCC 1 cut(s) 478
BtsCI GGATG 3 cut(s) 76, 174, 450
BtsIMutI CAGTG 1 cut(s) 376
Csp6I GTAC 1 cut(s) 379
CviAII CATG 3 cut(s) 271, 424, 443
CviJI RGCY 6 cut(s) 45, 254, 310, 412, 434, 478
CviKI_1 RGCY 6 cut(s) 45, 254, 310, 412, 434, 478
CviQI GTAC 1 cut(s) 379
DdeI CTNAG 2 cut(s) 343, 489
DpnI GATC 2 cut(s) 101, 395
DpnII GATC 2 cut(s) 99, 393
DriI GACNNNNNGTC 2 cut(s) 226, 293
Eam1105I GACNNNNNGTC 2 cut(s) 226, 293
Eco147I AGGCCT 1 cut(s) 478
EcoRII CCWGG 1 cut(s) 165
Esp3I CGTCTC 1 cut(s) 346
FaeI CATG 3 cut(s) 274, 427, 446
FaiI YATR 9 cut(s) 29, 110, 137, 243, 272, 285, 425, 444, 468
FatI CATG 3 cut(s) 270, 423, 442
FokI GGATG 3 cut(s) 83, 161, 437
HaeIII GGCC 1 cut(s) 478
Hin1II CATG 3 cut(s) 274, 427, 446
HinfI GANTC 3 cut(s) 35, 170, 213
HphI GGTGA 1 cut(s) 386
Hpy188I TCNGA 3 cut(s) 49, 250, 485
Hpy188III TCNNGA 2 cut(s) 397, 457
HpyAV CCTTC 2 cut(s) 184, 343
HpyCH4III ACNGT 1 cut(s) 371
HpyF3I CTNAG 2 cut(s) 343, 489
Hsp92II CATG 3 cut(s) 274, 427, 446
Kzo9I GATC 2 cut(s) 99, 393
LmnI GCTCC 1 cut(s) 201
LpnPI CCDG 8 cut(s) 27, 101, 141, 152, 179, 195, 372, 492
MaeIII GTNAC 2 cut(s) 64, 295
MalI GATC 2 cut(s) 101, 395
MboI GATC 2 cut(s) 99, 393
MboII GAAGA 1 cut(s) 472
MfeI CAATTG 1 cut(s) 58
MflI RGATCY 1 cut(s) 99
MluCI AATT 8 cut(s) 58, 111, 244, 312, 348, 414, 463, 469
MnlI CCTC 4 cut(s) 188, 272, 393, 464
MseI TTAA 1 cut(s) 417
MslI CAYNNNNRTG 1 cut(s) 455
MspR9I CCNGG 1 cut(s) 167
MunI CAATTG 1 cut(s) 58
MvaI CCWGG 1 cut(s) 167
NdeII GATC 2 cut(s) 99, 393
NlaIII CATG 3 cut(s) 274, 427, 446
NlaIV GGNNCC 2 cut(s) 101, 120
NmuCI GTSAC 2 cut(s) 64, 295
PceI AGGCCT 1 cut(s) 478
PfeI GAWTC 3 cut(s) 35, 170, 213
PfoI TCCNGGA 1 cut(s) 165
PshBI ATTAAT 1 cut(s) 417
PsiI TTATAA 1 cut(s) 468
Psp6I CCWGG 1 cut(s) 165
PspGI CCWGG 1 cut(s) 165
PspN4I GGNNCC 2 cut(s) 101, 120
PsuI RGATCY 1 cut(s) 99
RsaI GTAC 1 cut(s) 380
RsaNI GTAC 1 cut(s) 379
RseI CAYNNNNRTG 1 cut(s) 455
SaqAI TTAA 1 cut(s) 417
Sau3AI GATC 2 cut(s) 99, 393
ScrFI CCNGG 1 cut(s) 167
SetI ASST 7 cut(s) 195, 256, 312, 335, 404, 414, 436
SfcI CTRYAG 1 cut(s) 429
SmiMI CAYNNNNRTG 1 cut(s) 455
Sse9I AATT 8 cut(s) 58, 111, 244, 312, 348, 414, 463, 469
SseBI AGGCCT 1 cut(s) 478
StuI AGGCCT 1 cut(s) 478
StyD4I CCNGG 1 cut(s) 165
TaaI ACNGT 1 cut(s) 371
TaqI TCGA 2 cut(s) 5, 18
TasI AATT 8 cut(s) 58, 111, 244, 312, 348, 414, 463, 469
TatI WGTACW 1 cut(s) 378
TfiI GAWTC 3 cut(s) 35, 170, 213
Tru1I TTAA 1 cut(s) 417
Tru9I TTAA 1 cut(s) 417
TscAI CASTG 1 cut(s) 376
TseFI GTSAC 2 cut(s) 64, 295
Tsp45I GTSAC 2 cut(s) 64, 295
TspDTI ATGAA 1 cut(s) 395
TspGWI ACGGA 2 cut(s) 83, 406
TspRI CASTG 1 cut(s) 376
VspI ATTAAT 1 cut(s) 417
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.