Rmu_sc0029766.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0029766.1
OG0023075
Physical Location & Seq
Forward (+)
1 .. 603
603 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0029766.1_g000001.1.cds

Sequence Viewer

Length: 603 bp
acaatctgcgctttgctgatttcaagtctgttgctgaatataatttagaagctctttgcatacagtccatattgaggttttgtggacaacctgtcaccgagcaagagctaattgagaaaactctctccaccttccccatttcagccattgtggcattaaagcaataccgtactgaagtcaatgctggacggatcaccaggtttcatcagcttatcaatgttatatctgtagctgagaaacatgataacatactggtgaggaattataattcaaggcccattggaactaagagcattcaagaggcgaattataatgcacccaaaggagggcgcaaggagcggtaccctaagaatgggggacatgagggacgtatgggcccatataacgccctaaccaggaaggaaacaacaagttttgtgtggatacacgtggtggtaatgccacacgtgggagaggaggtcgtggtatccttaccggtattggtggcgtcatgggtcgtggtggtggcaccaacccggccttctaaggaacgcccacaacgtgcacctagtgagcattggttcaagcaatgcaaggcaagcgagcaactagcttcaagataca
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

200

Amino Acids

22.67

Weight (kDa)

9.61

Isoelectric Point (pI)

44.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0023075)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0001605.1_g000016 Rmu_sc0004208.1_g000017 Rmu_sc0007681.1_g000012 Rmu_sc0029766.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 266, 311
Acc65I GGTACC 1 cut(s) 341
AccB1I GGYRCC 2 cut(s) 341, 507
AccBSI CCGCTC 1 cut(s) 339
AciI CCGC 1 cut(s) 339
AclWI GGATC 1 cut(s) 199
AcuI CTGAAG 1 cut(s) 194
AcvI CACGTG 2 cut(s) 429, 447
AcyI GRCGYC 1 cut(s) 487
AdeI CACNNNGTG 3 cut(s) 432, 541, 550
AfaI GTAC 2 cut(s) 171, 343
AfiI CCNNNNNNNGG 6 cut(s) 74, 325, 326, 352, 395, 448
AflIII ACRYGT 2 cut(s) 426, 444
AgeI ACCGGT 1 cut(s) 474
AgsI TTSAA 5 cut(s) 24, 272, 298, 564, 596
AhdI GACNNNNNGTC 1 cut(s) 91
AjnI CCWGG 2 cut(s) 196, 394
AjuI GAANNNNNNNTTGG 2 cut(s) 504, 536
AluBI AGCT 5 cut(s) 52, 108, 210, 232, 592
AluI AGCT 5 cut(s) 52, 108, 210, 232, 592
Alw21I GWGCWC 1 cut(s) 546
Alw44I GTGCAC 1 cut(s) 542
AlwI GGATC 1 cut(s) 199
AoxI GGCC 3 cut(s) 274, 375, 517
ApaI GGGCCC 1 cut(s) 379
ApaLI GTGCAC 1 cut(s) 542
AsiGI ACCGGT 1 cut(s) 474
Asp718I GGTACC 1 cut(s) 341
AspLEI GCGC 2 cut(s) 11, 332
AspS9I GGNCC 3 cut(s) 275, 375, 376
AsuC2I CCSGG 1 cut(s) 516
AsuHPI GGTGA 3 cut(s) 87, 186, 267
BaeGI GKGCMC 2 cut(s) 379, 546
BanI GGYRCC 2 cut(s) 341, 507
BanII GRGCYC 1 cut(s) 379
BbrPI CACGTG 2 cut(s) 429, 447
Bbv12I GWGCWC 1 cut(s) 546
BciT130I CCWGG 2 cut(s) 198, 396
BciVI GTATCC 2 cut(s) 416, 477
BcnI CCSGG 1 cut(s) 516
BfaI CTAG 2 cut(s) 548, 589
BfmI CTRYAG 1 cut(s) 227
BfuI GTATCC 2 cut(s) 416, 477
BglI GCCNNNNNGGC 1 cut(s) 151
Bme1390I CCNGG 3 cut(s) 198, 396, 516
BmeRI GACNNNNNGTC 1 cut(s) 91
BmgT120I GGNCC 3 cut(s) 275, 375, 376
BmiI GGNNCC 3 cut(s) 343, 377, 509
BmrFI CCNGG 3 cut(s) 198, 396, 516
BpuMI CCSGG 1 cut(s) 516
BsaAI YACGTR 2 cut(s) 429, 447
BsaHI GRCGYC 1 cut(s) 487
BsaWI WCCGGW 1 cut(s) 474
BsaXI ACNNNNNCTCC 2 cut(s) 443, 473
Bsc4I CCNNNNNNNGG 6 cut(s) 74, 325, 326, 352, 395, 448
Bse118I RCCGGY 1 cut(s) 474
Bse1I ACTGG 1 cut(s) 257
Bse3DI GCAATG 1 cut(s) 574
BseBI CCWGG 2 cut(s) 198, 396
BseLI CCNNNNNNNGG 6 cut(s) 74, 325, 326, 352, 395, 448
BseMI GCAATG 1 cut(s) 574
BseMII CTCAG 1 cut(s) 224
BseNI ACTGG 1 cut(s) 257
BseRI GAGGAG 1 cut(s) 469
BseSI GKGCMC 2 cut(s) 379, 546
BshFI GGCC 3 cut(s) 276, 377, 519
BshNI GGYRCC 2 cut(s) 341, 507
BshTI ACCGGT 1 cut(s) 474
BsiHKAI GWGCWC 1 cut(s) 546
BsiSI CCGG 2 cut(s) 475, 516
BslFI GGGAC 2 cut(s) 371, 380
BslI CCNNNNNNNGG 6 cut(s) 74, 325, 326, 352, 395, 448
BsmFI GGGAC 2 cut(s) 371, 380
BsmI GAATGC 1 cut(s) 293
BsnI GGCC 3 cut(s) 276, 377, 519
Bsp120I GGGCCC 1 cut(s) 375
Bsp1286I GDGCHC 2 cut(s) 379, 546
Bsp143I GATC 1 cut(s) 191
BspACI CCGC 1 cut(s) 339
BspANI GGCC 3 cut(s) 276, 377, 519
BspCNI CTCAG 1 cut(s) 225
BspLI GGNNCC 3 cut(s) 343, 377, 509
BspPI GGATC 1 cut(s) 199
BspT107I GGYRCC 2 cut(s) 341, 507
BsrBI CCGCTC 1 cut(s) 339
BsrDI GCAATG 1 cut(s) 574
BsrFI RCCGGY 1 cut(s) 474
BsrI ACTGG 1 cut(s) 257
BssAI RCCGGY 1 cut(s) 474
BssMI GATC 1 cut(s) 191
BssNI GRCGYC 1 cut(s) 487
Bst2UI CCWGG 2 cut(s) 198, 396
Bst4CI ACNGT 2 cut(s) 65, 169
BstACI GRCGYC 1 cut(s) 487
BstBAI YACGTR 2 cut(s) 429, 447
BstC8I GCNNGC 2 cut(s) 579, 583
BstDEI CTNAG 4 cut(s) 233, 287, 347, 524
BstHHI GCGC 2 cut(s) 11, 332
BstKTI GATC 1 cut(s) 194
BstMBI GATC 1 cut(s) 191
BstMWI GCNNNNNNNGC 3 cut(s) 151, 336, 578
BstNI CCWGG 2 cut(s) 198, 396
BstSCI CCNGG 3 cut(s) 196, 394, 514
BstSFI CTRYAG 1 cut(s) 227
BstSLI GKGCMC 2 cut(s) 379, 546
BsuI GTATCC 2 cut(s) 416, 477
BsuRI GGCC 3 cut(s) 276, 377, 519
Cac8I GCNNGC 2 cut(s) 579, 583
CfoI GCGC 2 cut(s) 11, 332
Cfr10I RCCGGY 1 cut(s) 474
Cfr13I GGNCC 3 cut(s) 275, 375, 376
CseI GACGC 1 cut(s) 476
CsiI ACCWGGT 1 cut(s) 196
Csp6I GTAC 2 cut(s) 170, 342
CspAI ACCGGT 1 cut(s) 474
CviAII CATG 3 cut(s) 241, 361, 491
CviJI RGCY 9 cut(s) 52, 108, 145, 210, 232, 276, 377, 519, 592
CviKI_1 RGCY 9 cut(s) 52, 108, 145, 210, 232, 276, 377, 519, 592
CviQI GTAC 2 cut(s) 170, 342
DdeI CTNAG 4 cut(s) 233, 287, 347, 524
DpnI GATC 1 cut(s) 193
DpnII GATC 1 cut(s) 191
DraIII CACNNNGTG 3 cut(s) 432, 541, 550
DriI GACNNNNNGTC 1 cut(s) 91
Eam1105I GACNNNNNGTC 1 cut(s) 91
Eco24I GRGCYC 1 cut(s) 379
Eco57I CTGAAG 1 cut(s) 194
Eco72I CACGTG 2 cut(s) 429, 447
EcoRII CCWGG 2 cut(s) 196, 394
EcoT38I GRGCYC 1 cut(s) 379
FaeI CATG 3 cut(s) 244, 364, 494
FaqI GGGAC 2 cut(s) 371, 380
FatI CATG 3 cut(s) 240, 360, 490
FriOI GRGCYC 1 cut(s) 379
FspBI CTAG 2 cut(s) 548, 589
GlaI GCGC 2 cut(s) 10, 331
HaeIII GGCC 3 cut(s) 276, 377, 519
HapII CCGG 2 cut(s) 475, 516
HgaI GACGC 1 cut(s) 476
HhaI GCGC 2 cut(s) 11, 332
Hin1I GRCGYC 1 cut(s) 487
Hin1II CATG 3 cut(s) 244, 364, 494
Hin6I GCGC 2 cut(s) 9, 330
HinP1I GCGC 2 cut(s) 9, 330
HpaII CCGG 2 cut(s) 475, 516
HphI GGTGA 3 cut(s) 87, 186, 267
Hpy166II GTNNAC 2 cut(s) 85, 544
Hpy188III TCNNGA 2 cut(s) 298, 596
Hpy8I GTNNAC 2 cut(s) 85, 544
HpyAV CCTTC 3 cut(s) 141, 393, 530
HpyCH4III ACNGT 2 cut(s) 65, 169
HpyCH4IV ACGT 4 cut(s) 369, 428, 446, 540
HpyCH4V TGCA 4 cut(s) 59, 316, 544, 572
HpyF10VI GCNNNNNNNGC 3 cut(s) 151, 336, 578
HpyF3I CTNAG 4 cut(s) 233, 287, 347, 524
HpySE526I ACGT 4 cut(s) 369, 428, 446, 540
Hsp92I GRCGYC 1 cut(s) 487
Hsp92II CATG 3 cut(s) 244, 364, 494
HspAI GCGC 2 cut(s) 9, 330
KpnI GGTACC 1 cut(s) 345
Kzo9I GATC 1 cut(s) 191
LmnI GCTCC 1 cut(s) 336
LpnPI CCDG 9 cut(s) 104, 170, 183, 210, 238, 381, 408, 488, 529
MabI ACCWGGT 1 cut(s) 196
MaeI CTAG 2 cut(s) 548, 589
MaeII ACGT 4 cut(s) 369, 428, 446, 540
MaeIII GTNAC 1 cut(s) 93
MalI GATC 1 cut(s) 193
MbiI CCGCTC 1 cut(s) 339
MboI GATC 1 cut(s) 191
MhlI GDGCHC 2 cut(s) 379, 546
MluCI AATT 5 cut(s) 42, 110, 261, 267, 306
MnlI CCTC 7 cut(s) 68, 251, 294, 319, 357, 447, 450
MseI TTAA 1 cut(s) 157
MslI CAYNNNNRTG 1 cut(s) 253
MspI CCGG 2 cut(s) 475, 516
MspR9I CCNGG 3 cut(s) 198, 396, 516
Mva1269I GAATGC 1 cut(s) 293
MvaI CCWGG 2 cut(s) 198, 396
MwoI GCNNNNNNNGC 3 cut(s) 151, 336, 578
NciI CCSGG 1 cut(s) 516
NdeII GATC 1 cut(s) 191
NlaIII CATG 3 cut(s) 244, 364, 494
NlaIV GGNNCC 3 cut(s) 343, 377, 509
NmuCI GTSAC 1 cut(s) 93
PcsI WCGNNNNNNNCGW 1 cut(s) 537
PctI GAATGC 1 cut(s) 293
PinAI ACCGGT 1 cut(s) 474
PmaCI CACGTG 2 cut(s) 429, 447
PmlI CACGTG 2 cut(s) 429, 447
Ppu21I YACGTR 2 cut(s) 429, 447
PsiI TTATAA 2 cut(s) 266, 311
Psp6I CCWGG 2 cut(s) 196, 394
PspCI CACGTG 2 cut(s) 429, 447
PspGI CCWGG 2 cut(s) 196, 394
PspN4I GGNNCC 3 cut(s) 343, 377, 509
PspOMI GGGCCC 1 cut(s) 375
PspPI GGNCC 3 cut(s) 275, 375, 376
RsaI GTAC 2 cut(s) 171, 343
RsaNI GTAC 2 cut(s) 170, 342
RseI CAYNNNNRTG 1 cut(s) 253
SaqAI TTAA 1 cut(s) 157
Sau3AI GATC 1 cut(s) 191
Sau96I GGNCC 3 cut(s) 275, 375, 376
ScrFI CCNGG 3 cut(s) 198, 396, 516
SduI GDGCHC 2 cut(s) 379, 546
SexAI ACCWGGT 1 cut(s) 196
SfcI CTRYAG 1 cut(s) 227
SmiMI CAYNNNNRTG 1 cut(s) 253
Sse9I AATT 5 cut(s) 42, 110, 261, 267, 306
SsiI CCGC 1 cut(s) 339
SspMI CTAG 2 cut(s) 548, 589
StyD4I CCNGG 3 cut(s) 196, 394, 514
TaaI ACNGT 2 cut(s) 65, 169
TaiI ACGT 4 cut(s) 372, 431, 449, 543
TasI AATT 5 cut(s) 42, 110, 261, 267, 306
Tru1I TTAA 1 cut(s) 157
Tru9I TTAA 1 cut(s) 157
TseFI GTSAC 1 cut(s) 93
Tsp45I GTSAC 1 cut(s) 93
TspDTI ATGAA 1 cut(s) 193
TspGWI ACGGA 1 cut(s) 204
VneI GTGCAC 1 cut(s) 542
XspI CTAG 2 cut(s) 548, 589
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.