Rmu_sc0004208.1_g000017

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004208.1
OG0023075
Physical Location & Seq
Forward (+)
66008 .. 66751
744 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004208.1_g000017.1.cds

Sequence Viewer

Length: 666 bp
atgtcgaatggacctagactcgactttcccatgcttgactcaacaggctcggattaccacagttgggtaaccgatgttgagaatcatctcacttccaagggaatattacccataatccaggcacctaacccggatcttgtgttcaaccgaacatctaaaaagcatgctcaagcagtagagctagaagagcgctttggcaatgtccaagattccctcctccctgacttgaaggttcaatggaacaacctgcgctttgctgatttcaagtctgttgctgaatataatttagaagctcttcgcatacagtccatgttgaggttttgtggacaacctgtcacagagcaagagctaattgagaaaactctctccaccttccctgtttcagccattgtggtatcaaagcaataccgtactgaagtcaatgcaggacggatcatgaggtttcatcagcttatcaatattatatttgtagctgagaaacatgataacatactcgtgaggaattataattcaaggcccattggaactaagagcgttcatgaggcgaattataatgcacccaaaggagggcgcaaggagcggtaccctaagaataggggacatgagggacatatgggcccatataaccgtcaaggcccattggaactaagagcgttcataaggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

221

Amino Acids

25.34

Weight (kDa)

9.32

Isoelectric Point (pI)

36.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0023075)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0001605.1_g000016 Rmu_sc0004208.1_g000017 Rmu_sc0007681.1_g000012 Rmu_sc0029766.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 507, 552
Acc36I ACCTGC 1 cut(s) 255
Acc65I GGTACC 1 cut(s) 582
AccB1I GGYRCC 2 cut(s) 121, 582
AccBSI CCGCTC 1 cut(s) 580
AciI CCGC 1 cut(s) 580
AclWI GGATC 2 cut(s) 141, 440
AcuI CTGAAG 1 cut(s) 435
AfaI GTAC 2 cut(s) 412, 584
AfeI AGCGCT 1 cut(s) 191
AfiI CCNNNNNNNGG 4 cut(s) 64, 315, 566, 567
AgsI TTSAA 5 cut(s) 145, 229, 236, 265, 513
AhdI GACNNNNNGTC 1 cut(s) 332
AjnI CCWGG 1 cut(s) 117
AjuI GAANNNNNNNTTGG 2 cut(s) 177, 209
AloI GAACNNNNNNTCC 2 cut(s) 125, 157
AluBI AGCT 5 cut(s) 181, 293, 349, 451, 473
AluI AGCT 5 cut(s) 181, 293, 349, 451, 473
AlwI GGATC 2 cut(s) 141, 440
Aor51HI AGCGCT 1 cut(s) 191
AoxI GGCC 3 cut(s) 515, 616, 634
ApaI GGGCCC 1 cut(s) 620
Asp700I GAANNNNTTC 1 cut(s) 294
Asp718I GGTACC 1 cut(s) 582
AspLEI GCGC 3 cut(s) 192, 252, 573
AspS9I GGNCC 5 cut(s) 11, 516, 616, 617, 635
AsuC2I CCSGG 1 cut(s) 131
AvaII GGWCC 1 cut(s) 11
BaeGI GKGCMC 1 cut(s) 620
BanI GGYRCC 2 cut(s) 121, 582
BanII GRGCYC 1 cut(s) 620
BauI CACGAG 1 cut(s) 494
BciT130I CCWGG 1 cut(s) 119
BcnI CCSGG 1 cut(s) 131
BfaI CTAG 2 cut(s) 15, 182
BfoI RGCGCY 1 cut(s) 193
BfuAI ACCTGC 1 cut(s) 255
Bme1390I CCNGG 2 cut(s) 119, 131
Bme18I GGWCC 1 cut(s) 11
BmeRI GACNNNNNGTC 1 cut(s) 332
BmgT120I GGNCC 5 cut(s) 11, 516, 616, 617, 635
BmiI GGNNCC 3 cut(s) 123, 584, 618
BmrFI CCNGG 2 cut(s) 119, 131
BpuEI CTTGAG 1 cut(s) 153
BpuMI CCSGG 1 cut(s) 131
BsaJI CCNNGG 1 cut(s) 96
Bsc4I CCNNNNNNNGG 4 cut(s) 64, 315, 566, 567
Bse3DI GCAATG 1 cut(s) 205
BseBI CCWGG 1 cut(s) 119
BseDI CCNNGG 1 cut(s) 96
BseLI CCNNNNNNNGG 4 cut(s) 64, 315, 566, 567
BseMI GCAATG 1 cut(s) 205
BseMII CTCAG 1 cut(s) 465
BseRI GAGGAG 1 cut(s) 206
BseSI GKGCMC 1 cut(s) 620
BshFI GGCC 3 cut(s) 517, 618, 636
BshNI GGYRCC 2 cut(s) 121, 582
BsiSI CCGG 1 cut(s) 131
BslFI GGGAC 2 cut(s) 612, 621
BslI CCNNNNNNNGG 4 cut(s) 64, 315, 566, 567
BsmFI GGGAC 2 cut(s) 612, 621
BsnI GGCC 3 cut(s) 517, 618, 636
Bsp120I GGGCCC 1 cut(s) 616
Bsp1286I GDGCHC 1 cut(s) 620
Bsp143I GATC 2 cut(s) 133, 432
BspACI CCGC 1 cut(s) 580
BspANI GGCC 3 cut(s) 517, 618, 636
BspCNI CTCAG 1 cut(s) 466
BspHI TCATGA 2 cut(s) 435, 538
BspLI GGNNCC 3 cut(s) 123, 584, 618
BspMI ACCTGC 1 cut(s) 255
BspPI GGATC 2 cut(s) 141, 440
BspQI GCTCTTC 2 cut(s) 180, 300
BspT107I GGYRCC 2 cut(s) 121, 582
BsrBI CCGCTC 1 cut(s) 580
BsrDI GCAATG 1 cut(s) 205
BssECI CCNNGG 1 cut(s) 96
BssMI GATC 2 cut(s) 133, 432
BssSI CACGAG 1 cut(s) 494
BssT1I CCWWGG 1 cut(s) 96
Bst2BI CACGAG 1 cut(s) 494
Bst2UI CCWGG 1 cut(s) 119
Bst4CI ACNGT 4 cut(s) 62, 306, 410, 629
Bst6I CTCTTC 2 cut(s) 180, 300
BstC8I GCNNGC 1 cut(s) 165
BstDEI CTNAG 4 cut(s) 474, 528, 588, 647
BstEII GGTNACC 1 cut(s) 67
BstH2I RGCGCY 1 cut(s) 193
BstHHI GCGC 3 cut(s) 192, 252, 573
BstKTI GATC 2 cut(s) 136, 435
BstMBI GATC 2 cut(s) 133, 432
BstMWI GCNNNNNNNGC 2 cut(s) 187, 577
BstNI CCWGG 1 cut(s) 119
BstNSI RCATGY 1 cut(s) 167
BstPI GGTNACC 1 cut(s) 67
BstSCI CCNGG 2 cut(s) 117, 129
BstSLI GKGCMC 1 cut(s) 620
BstX2I RGATCY 1 cut(s) 133
BstYI RGATCY 1 cut(s) 133
BsuRI GGCC 3 cut(s) 517, 618, 636
BveI ACCTGC 1 cut(s) 255
Cac8I GCNNGC 1 cut(s) 165
CciI TCATGA 2 cut(s) 435, 538
CfoI GCGC 3 cut(s) 192, 252, 573
Cfr13I GGNCC 5 cut(s) 11, 516, 616, 617, 635
Csp6I GTAC 2 cut(s) 411, 583
CviAII CATG 7 cut(s) 31, 164, 310, 436, 482, 539, 602
CviQI GTAC 2 cut(s) 411, 583
DdeI CTNAG 4 cut(s) 474, 528, 588, 647
DpnI GATC 2 cut(s) 135, 434
DpnII GATC 2 cut(s) 133, 432
DriI GACNNNNNGTC 1 cut(s) 332
Eam1104I CTCTTC 2 cut(s) 180, 300
Eam1105I GACNNNNNGTC 1 cut(s) 332
EarI CTCTTC 2 cut(s) 180, 300
Eco130I CCWWGG 1 cut(s) 96
Eco24I GRGCYC 1 cut(s) 620
Eco47I GGWCC 1 cut(s) 11
Eco47III AGCGCT 1 cut(s) 191
Eco57I CTGAAG 1 cut(s) 435
Eco91I GGTNACC 1 cut(s) 67
EcoO65I GGTNACC 1 cut(s) 67
EcoRII CCWGG 1 cut(s) 117
EcoT14I CCWWGG 1 cut(s) 96
EcoT38I GRGCYC 1 cut(s) 620
ErhI CCWWGG 1 cut(s) 96
FaeI CATG 7 cut(s) 34, 167, 313, 439, 485, 542, 605
FaqI GGGAC 2 cut(s) 612, 621
FatI CATG 7 cut(s) 30, 163, 309, 435, 481, 538, 601
FauNDI CATATG 1 cut(s) 612
FriOI GRGCYC 1 cut(s) 620
FspBI CTAG 2 cut(s) 15, 182
GlaI GCGC 3 cut(s) 191, 251, 572
HaeII RGCGCY 1 cut(s) 193
HaeIII GGCC 3 cut(s) 517, 618, 636
HapII CCGG 1 cut(s) 131
HhaI GCGC 3 cut(s) 192, 252, 573
Hin1II CATG 7 cut(s) 34, 167, 313, 439, 485, 542, 605
Hin6I GCGC 3 cut(s) 190, 250, 571
HinP1I GCGC 3 cut(s) 190, 250, 571
HinfI GANTC 4 cut(s) 18, 38, 82, 209
HpaII CCGG 1 cut(s) 131
Hpy166II GTNNAC 1 cut(s) 326
Hpy188I TCNGA 1 cut(s) 52
Hpy188III TCNNGA 3 cut(s) 436, 496, 539
Hpy8I GTNNAC 1 cut(s) 326
HpyAV CCTTC 2 cut(s) 223, 382
HpyCH4III ACNGT 4 cut(s) 62, 306, 410, 629
HpyCH4V TGCA 2 cut(s) 425, 557
HpyF10VI GCNNNNNNNGC 2 cut(s) 187, 577
HpyF3I CTNAG 4 cut(s) 474, 528, 588, 647
Hsp92II CATG 7 cut(s) 34, 167, 313, 439, 485, 542, 605
HspAI GCGC 3 cut(s) 190, 250, 571
KpnI GGTACC 1 cut(s) 586
Kzo9I GATC 2 cut(s) 133, 432
LguI GCTCTTC 2 cut(s) 180, 300
LmnI GCTCC 1 cut(s) 577
LpnPI CCDG 9 cut(s) 30, 104, 131, 144, 234, 260, 345, 390, 411
MaeI CTAG 2 cut(s) 15, 182
MaeIII GTNAC 2 cut(s) 67, 334
MalI GATC 2 cut(s) 135, 434
MbiI CCGCTC 1 cut(s) 580
MboI GATC 2 cut(s) 133, 432
MboII GAAGA 2 cut(s) 197, 287
MflI RGATCY 1 cut(s) 133
MhlI GDGCHC 1 cut(s) 620
MluCI AATT 5 cut(s) 283, 351, 502, 508, 547
MlyI GAGTC 2 cut(s) 12, 32
MnlI CCTC 8 cut(s) 224, 227, 309, 432, 492, 535, 560, 598
MroXI GAANNNNTTC 1 cut(s) 294
MslI CAYNNNNRTG 1 cut(s) 494
MspI CCGG 1 cut(s) 131
MspR9I CCNGG 2 cut(s) 119, 131
MvaI CCWGG 1 cut(s) 119
MwoI GCNNNNNNNGC 2 cut(s) 187, 577
NciI CCSGG 1 cut(s) 131
NdeI CATATG 1 cut(s) 612
NdeII GATC 2 cut(s) 133, 432
NlaIII CATG 7 cut(s) 34, 167, 313, 439, 485, 542, 605
NlaIV GGNNCC 3 cut(s) 123, 584, 618
NmuCI GTSAC 1 cut(s) 334
NspI RCATGY 1 cut(s) 167
PaeI GCATGC 1 cut(s) 167
PagI TCATGA 2 cut(s) 435, 538
PciSI GCTCTTC 2 cut(s) 180, 300
PdmI GAANNNNTTC 1 cut(s) 294
PfeI GAWTC 2 cut(s) 82, 209
PleI GAGTC 2 cut(s) 12, 32
PpsI GAGTC 2 cut(s) 12, 32
PsiI TTATAA 2 cut(s) 507, 552
Psp6I CCWGG 1 cut(s) 117
PspEI GGTNACC 1 cut(s) 67
PspGI CCWGG 1 cut(s) 117
PspN4I GGNNCC 3 cut(s) 123, 584, 618
PspOMI GGGCCC 1 cut(s) 616
PspPI GGNCC 5 cut(s) 11, 516, 616, 617, 635
PsuI RGATCY 1 cut(s) 133
RsaI GTAC 2 cut(s) 412, 584
RsaNI GTAC 2 cut(s) 411, 583
RseI CAYNNNNRTG 1 cut(s) 494
SapI GCTCTTC 2 cut(s) 180, 300
Sau3AI GATC 2 cut(s) 133, 432
Sau96I GGNCC 5 cut(s) 11, 516, 616, 617, 635
SchI GAGTC 2 cut(s) 12, 32
ScrFI CCNGG 2 cut(s) 119, 131
SduI GDGCHC 1 cut(s) 620
SinI GGWCC 1 cut(s) 11
SmiMI CAYNNNNRTG 1 cut(s) 494
SmlI CTYRAG 1 cut(s) 168
SmoI CTYRAG 1 cut(s) 168
SphI GCATGC 1 cut(s) 167
Sse9I AATT 5 cut(s) 283, 351, 502, 508, 547
SsiI CCGC 1 cut(s) 580
SspI AATATT 2 cut(s) 105, 460
SspMI CTAG 2 cut(s) 15, 182
StyD4I CCNGG 2 cut(s) 117, 129
StyI CCWWGG 1 cut(s) 96
TaaI ACNGT 4 cut(s) 62, 306, 410, 629
TaqI TCGA 2 cut(s) 5, 21
TasI AATT 5 cut(s) 283, 351, 502, 508, 547
TfiI GAWTC 2 cut(s) 82, 209
TseFI GTSAC 1 cut(s) 334
Tsp45I GTSAC 1 cut(s) 334
TspDTI ATGAA 3 cut(s) 434, 527, 646
TspGWI ACGGA 1 cut(s) 445
VpaK11BI GGWCC 1 cut(s) 11
XceI RCATGY 1 cut(s) 167
XmnI GAANNNNTTC 1 cut(s) 294
XspI CTAG 2 cut(s) 15, 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.