Rmu_sc0001708.1_g000032

Serine-rich protein-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001708.1
OG0020732
Physical Location & Seq
Reverse (-)
124010 .. 124956
947 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 510 bp
atgcagtccaaccctgaagacgacgaagaagctctattcggagctccagccactccaacgtcggaaatcagactccagaccaccagcttctcgtctccgtcgtctacctttttcaacaaccgccaggaccaccatagccactacaaccacaccgactaccaccaccaccgttccgcttcaccgacgcatatcaatctctacacctccaatgctctgtctctagctttctgcttctccatcgagcaccgttccatctccccaaatcaatccatcacaatttccaagaagaacggcccgatcgcggcggccaggaagacgagtatgtgctcgccgacgaatcatccaagctcgtttcactgcagatctgccatgacgaaatcggagaagggagatctgcaaccgtcgaagtcaaagatgggaggagaagaagaagtgacctgtcgccggattccggtcaccggagtcggcacccagccactggtcaccagaggctggcaaggtggaggatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

169

Amino Acids

18.53

Weight (kDa)

8.41

Isoelectric Point (pI)

70.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 467
AccB7I CCANNNNNTGG 2 cut(s) 478, 492
AccI GTMKAC 1 cut(s) 104
AccII CGCG 1 cut(s) 302
AciI CCGC 4 cut(s) 121, 174, 302, 305
AcoI YGGCCR 1 cut(s) 306
AcuI CTGAAG 1 cut(s) 36
AfiI CCNNNNNNNGG 6 cut(s) 301, 444, 451, 458, 478, 492
AgsI TTSAA 1 cut(s) 115
AjnI CCWGG 2 cut(s) 123, 308
AluBI AGCT 5 cut(s) 32, 44, 87, 224, 348
AluI AGCT 5 cut(s) 32, 44, 87, 224, 348
Alw21I GWGCWC 3 cut(s) 46, 246, 329
Alw26I GTCTC 2 cut(s) 99, 222
AlwNI CAGNNNCTG 2 cut(s) 478, 492
AoxI GGCC 2 cut(s) 292, 306
AspS9I GGNCC 2 cut(s) 127, 293
AsuHPI GGTGA 3 cut(s) 171, 448, 475
AvaII GGWCC 1 cut(s) 127
BanI GGYRCC 1 cut(s) 467
BanII GRGCYC 1 cut(s) 46
BbsI GAAGAC 2 cut(s) 24, 320
Bbv12I GWGCWC 3 cut(s) 46, 246, 329
BccI CCATC 4 cut(s) 245, 260, 278, 409
BceAI ACGGC 1 cut(s) 307
BciT130I CCWGG 2 cut(s) 125, 310
BcoDI GTCTC 2 cut(s) 99, 222
BfaI CTAG 1 cut(s) 221
BfmI CTRYAG 1 cut(s) 358
BglII AGATCT 2 cut(s) 362, 391
BisI GCNGC 2 cut(s) 303, 306
BlsI GCNGC 2 cut(s) 304, 307
Bme1390I CCNGG 2 cut(s) 125, 310
Bme18I GGWCC 1 cut(s) 127
BmgT120I GGNCC 2 cut(s) 127, 293
BmiI GGNNCC 1 cut(s) 469
BmrFI CCNGG 2 cut(s) 125, 310
BpiI GAAGAC 2 cut(s) 24, 320
BpmI CTGGAG 2 cut(s) 30, 59
BsaWI WCCGGW 2 cut(s) 451, 458
Bsc4I CCNNNNNNNGG 6 cut(s) 301, 444, 451, 458, 478, 492
Bse1I ACTGG 1 cut(s) 483
BseBI CCWGG 2 cut(s) 125, 310
BseGI GGATG 1 cut(s) 340
BseLI CCNNNNNNNGG 6 cut(s) 301, 444, 451, 458, 478, 492
BseNI ACTGG 1 cut(s) 483
BseRI GAGGAG 1 cut(s) 435
BseYI CCCAGC 1 cut(s) 471
Bsh1236I CGCG 1 cut(s) 302
Bsh1285I CGRYCG 1 cut(s) 300
BshFI GGCC 2 cut(s) 294, 308
BshNI GGYRCC 1 cut(s) 467
BsiEI CGRYCG 1 cut(s) 300
BsiHKAI GWGCWC 3 cut(s) 46, 246, 329
BsiSI CCGG 3 cut(s) 445, 452, 459
BslI CCNNNNNNNGG 6 cut(s) 301, 444, 451, 458, 478, 492
BsmAI GTCTC 2 cut(s) 99, 222
BsmBI CGTCTC 1 cut(s) 99
BsnI GGCC 2 cut(s) 294, 308
Bsp1286I GDGCHC 3 cut(s) 46, 246, 329
Bsp143I GATC 3 cut(s) 297, 362, 391
BspACI CCGC 4 cut(s) 121, 174, 302, 305
BspANI GGCC 2 cut(s) 294, 308
BspFNI CGCG 1 cut(s) 302
BspLI GGNNCC 1 cut(s) 469
BspMAI CTGCAG 1 cut(s) 362
BspT107I GGYRCC 1 cut(s) 467
BsrI ACTGG 1 cut(s) 483
BssMI GATC 3 cut(s) 297, 362, 391
Bst2UI CCWGG 2 cut(s) 125, 310
Bst4CI ACNGT 3 cut(s) 170, 248, 402
BstC8I GCNNGC 2 cut(s) 329, 494
BstEII GGTNACC 2 cut(s) 454, 481
BstF5I GGATG 1 cut(s) 340
BstFNI CGCG 1 cut(s) 302
BstKTI GATC 3 cut(s) 300, 365, 394
BstMAI GTCTC 2 cut(s) 99, 222
BstMBI GATC 3 cut(s) 297, 362, 391
BstMCI CGRYCG 1 cut(s) 300
BstNI CCWGG 2 cut(s) 125, 310
BstPI GGTNACC 2 cut(s) 454, 481
BstSCI CCNGG 2 cut(s) 123, 308
BstSFI CTRYAG 1 cut(s) 358
BstUI CGCG 1 cut(s) 302
BstV2I GAAGAC 2 cut(s) 24, 320
BstX2I RGATCY 2 cut(s) 362, 391
BstYI RGATCY 2 cut(s) 362, 391
BsuRI GGCC 2 cut(s) 294, 308
BtsCI GGATG 1 cut(s) 340
BtsI GCAGTG 1 cut(s) 355
BtsIMutI CAGTG 2 cut(s) 355, 476
Cac8I GCNNGC 2 cut(s) 329, 494
CaiI CAGNNNCTG 2 cut(s) 478, 492
Cfr13I GGNCC 2 cut(s) 127, 293
CseI GACGC 1 cut(s) 193
CviAII CATG 1 cut(s) 370
DpnI GATC 3 cut(s) 299, 364, 393
DpnII GATC 3 cut(s) 297, 362, 391
EaeI YGGCCR 1 cut(s) 306
Ecl136II GAGCTC 1 cut(s) 44
Eco24I GRGCYC 1 cut(s) 46
Eco47I GGWCC 1 cut(s) 127
Eco53kI GAGCTC 1 cut(s) 44
Eco57I CTGAAG 1 cut(s) 36
Eco91I GGTNACC 2 cut(s) 454, 481
EcoICRI GAGCTC 1 cut(s) 44
EcoO65I GGTNACC 2 cut(s) 454, 481
EcoRII CCWGG 2 cut(s) 123, 308
EcoT38I GRGCYC 1 cut(s) 46
Esp3I CGTCTC 1 cut(s) 99
FaeI CATG 1 cut(s) 373
FaiI YATR 4 cut(s) 135, 189, 323, 371
FatI CATG 1 cut(s) 369
FblI GTMKAC 1 cut(s) 104
Fnu4HI GCNGC 2 cut(s) 303, 306
FokI GGATG 1 cut(s) 327
FriOI GRGCYC 1 cut(s) 46
Fsp4HI GCNGC 2 cut(s) 303, 306
FspBI CTAG 1 cut(s) 221
GluI GCNGC 2 cut(s) 303, 306
GsaI CCCAGC 1 cut(s) 475
GsuI CTGGAG 2 cut(s) 30, 59
HaeIII GGCC 2 cut(s) 294, 308
HapII CCGG 3 cut(s) 445, 452, 459
HgaI GACGC 1 cut(s) 193
Hin1II CATG 1 cut(s) 373
HinfI GANTC 4 cut(s) 72, 337, 448, 462
HpaII CCGG 3 cut(s) 445, 452, 459
HphI GGTGA 3 cut(s) 171, 448, 475
Hpy166II GTNNAC 1 cut(s) 105
Hpy188I TCNGA 4 cut(s) 41, 64, 71, 382
Hpy188III TCNNGA 1 cut(s) 76
Hpy8I GTNNAC 1 cut(s) 105
Hpy99I CGWCG 6 cut(s) 26, 64, 103, 187, 337, 406
HpyAV CCTTC 1 cut(s) 379
HpyCH4III ACNGT 3 cut(s) 170, 248, 402
HpyCH4IV ACGT 1 cut(s) 59
HpyCH4V TGCA 3 cut(s) 4, 360, 397
HpySE526I ACGT 1 cut(s) 59
Hsp92II CATG 1 cut(s) 373
Kzo9I GATC 3 cut(s) 297, 362, 391
LmnI GCTCC 2 cut(s) 41, 49
MaeI CTAG 1 cut(s) 221
MaeII ACGT 1 cut(s) 59
MaeIII GTNAC 3 cut(s) 433, 454, 481
MalI GATC 3 cut(s) 299, 364, 393
MboI GATC 3 cut(s) 297, 362, 391
MboII GAAGA 6 cut(s) 29, 38, 298, 325, 437, 440
MflI RGATCY 2 cut(s) 362, 391
MhlI GDGCHC 3 cut(s) 46, 246, 329
MluCI AATT 1 cut(s) 276
MlyI GAGTC 2 cut(s) 66, 471
MmeI TCCRAC 3 cut(s) 33, 42, 80
MnlI CCTC 4 cut(s) 214, 413, 482, 497
MspI CCGG 3 cut(s) 445, 452, 459
MspR9I CCNGG 2 cut(s) 125, 310
MvaI CCWGG 2 cut(s) 125, 310
MvnI CGCG 1 cut(s) 302
NdeII GATC 3 cut(s) 297, 362, 391
NlaIII CATG 1 cut(s) 373
NlaIV GGNNCC 1 cut(s) 469
NmuCI GTSAC 3 cut(s) 433, 454, 481
PcsI WCGNNNNNNNCGW 1 cut(s) 98
PfeI GAWTC 2 cut(s) 337, 448
PflMI CCANNNNNTGG 2 cut(s) 478, 492
PkrI GCNGC 2 cut(s) 304, 307
Ple19I CGATCG 1 cut(s) 300
PleI GAGTC 2 cut(s) 66, 470
PpsI GAGTC 2 cut(s) 66, 470
Psp124BI GAGCTC 1 cut(s) 46
Psp6I CCWGG 2 cut(s) 123, 308
PspEI GGTNACC 2 cut(s) 454, 481
PspFI CCCAGC 1 cut(s) 471
PspGI CCWGG 2 cut(s) 123, 308
PspN4I GGNNCC 1 cut(s) 469
PspPI GGNCC 2 cut(s) 127, 293
PstI CTGCAG 1 cut(s) 362
PstNI CAGNNNCTG 2 cut(s) 478, 492
PsuI RGATCY 2 cut(s) 362, 391
PvuI CGATCG 1 cut(s) 300
SacI GAGCTC 1 cut(s) 46
SatI GCNGC 2 cut(s) 303, 306
Sau3AI GATC 3 cut(s) 297, 362, 391
Sau96I GGNCC 2 cut(s) 127, 293
SchI GAGTC 2 cut(s) 66, 471
ScrFI CCNGG 2 cut(s) 125, 310
SduI GDGCHC 3 cut(s) 46, 246, 329
SfcI CTRYAG 1 cut(s) 358
SinI GGWCC 1 cut(s) 127
Sse9I AATT 1 cut(s) 276
SsiI CCGC 4 cut(s) 121, 174, 302, 305
SspMI CTAG 1 cut(s) 221
SstI GAGCTC 1 cut(s) 46
StyD4I CCNGG 2 cut(s) 123, 308
TaaI ACNGT 3 cut(s) 170, 248, 402
TaiI ACGT 1 cut(s) 62
TaqI TCGA 2 cut(s) 240, 404
TasI AATT 1 cut(s) 276
TauI GCSGC 2 cut(s) 305, 308
TfiI GAWTC 2 cut(s) 337, 448
TscAI CASTG 2 cut(s) 362, 483
TseFI GTSAC 3 cut(s) 433, 454, 481
Tsp45I GTSAC 3 cut(s) 433, 454, 481
TspGWI ACGGA 1 cut(s) 87
TspRI CASTG 2 cut(s) 362, 483
Van91I CCANNNNNTGG 2 cut(s) 478, 492
VpaK11BI GGWCC 1 cut(s) 127
XmiI GTMKAC 1 cut(s) 104
XspI CTAG 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.