Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001924.1

Orthogroup ID

OG0021492

Physical Location & Seq

Genomic Coordinates Reverse (-)

43047 .. 43454

Gene Structure 408 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

atgtacaatattctagcacaagggaactattccaggcaagtgatgggtaatgacagtgacacaaccctagagattacggtgaagaaaggagaaccaactttggtacctcctgtggtggaaacgaggaaaggtttctacttcctcttaaatctagacgagaacactccggccatagtttgtaccgtctactactttaaatcagattcaaaaggcaatgaagaagctgtcaaagtcattaaaaaagcattgtcaaaagttcttgttcattattatcctgtggcaggaaggttcactaaaagttcagaggggaaggtgaaggtgatggtggattgcacaggagatggagctatttttgttgaagcagaagcaaactacgaaatgaaggattggagacataacaaagcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005975 GO:0005976 GO:0006082 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009664 GO:0009698 GO:0009699 GO:0009712 GO:0009713 GO:0009801 GO:0009802 GO:0009803 GO:0009832 GO:0009987 GO:0010345 GO:0010383 GO:0010393 GO:0016043 GO:0016051 GO:0016740 GO:0016746 GO:0016747 GO:0017144 GO:0018958 GO:0019438 GO:0019748 GO:0019752 GO:0032787 GO:0033692 GO:0034637 GO:0034645 GO:0042537 GO:0042546 GO:0043170 GO:0043436 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044281 GO:0044550 GO:0045229 GO:0045488 GO:0045489 GO:0046189 GO:0050734 GO:0052325 GO:0052546 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0090430 GO:0090431 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00073 map00073

Pfam Domains

Protein Families

Transferase

Protein Analysis

135

Amino Acids

15.15

Weight (kDa)

7.71

Isoelectric Point (pI)

39.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	30 - 131	1.4e-19	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021492)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000004606
rosa_multiflora	Rmu_co8451345.1_g000001 Rmu_sc0001924.1_g000007
rosa_roxburghii	Rroxscaffold_3G00265350
rosa_samantha	Rh7CG108100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	103
AccB1I	GGYRCC	1 cut(s)	103
AccI	GTMKAC	1 cut(s)	186
AcoI	YGGCCR	1 cut(s)	168
AfaI	GTAC	3 cut(s)	5, 105, 181
AfiI	CCNNNNNNNGG	1 cut(s)	281
AgsI	TTSAA	2 cut(s)	207, 359
AjnI	CCWGG	1 cut(s)	32
AluBI	AGCT	3 cut(s)	224, 347, 404
AluI	AGCT	3 cut(s)	224, 347, 404
Alw26I	GTCTC	1 cut(s)	385
AoxI	GGCC	1 cut(s)	168
Asp700I	GAANNNNTTC	1 cut(s)	131
Asp718I	GGTACC	1 cut(s)	103
AsuHPI	GGTGA	3 cut(s)	91, 325, 331
BaeI	ACNNNNGTAYC	2 cut(s)	87, 120
BanI	GGYRCC	1 cut(s)	103
BccI	CCATC	3 cut(s)	37, 316, 335
BciT130I	CCWGG	1 cut(s)	34
BcoDI	GTCTC	1 cut(s)	385
BfaI	CTAG	3 cut(s)	14, 68, 152
Bme1390I	CCNGG	1 cut(s)	34
BmiI	GGNNCC	1 cut(s)	105
BmrFI	CCNGG	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	1 cut(s)	281
Bse3DI	GCAATG	1 cut(s)	220
BseBI	CCWGG	1 cut(s)	34
BseLI	CCNNNNNNNGG	1 cut(s)	281
BseMI	GCAATG	1 cut(s)	220
BshFI	GGCC	1 cut(s)	170
BshNI	GGYRCC	1 cut(s)	103
BsiSI	CCGG	1 cut(s)	167
BslI	CCNNNNNNNGG	1 cut(s)	281
BsmAI	GTCTC	1 cut(s)	385
BsnI	GGCC	1 cut(s)	170
Bsp1407I	TGTACA	1 cut(s)	3
BspANI	GGCC	1 cut(s)	170
BspLI	GGNNCC	1 cut(s)	105
BspT107I	GGYRCC	1 cut(s)	103
BsrDI	GCAATG	1 cut(s)	220
BsrGI	TGTACA	1 cut(s)	3
Bst2UI	CCWGG	1 cut(s)	34
Bst4CI	ACNGT	3 cut(s)	56, 79, 184
BstAUI	TGTACA	1 cut(s)	3
BstENI	CCTNNNNNAGG	1 cut(s)	279
BstMAI	GTCTC	1 cut(s)	385
BstNI	CCWGG	1 cut(s)	34
BstSCI	CCNGG	1 cut(s)	32
BsuRI	GGCC	1 cut(s)	170
BtsIMutI	CAGTG	1 cut(s)	61
Csp6I	GTAC	3 cut(s)	4, 104, 180
CviJI	RGCY	4 cut(s)	170, 224, 347, 404
CviKI_1	RGCY	4 cut(s)	170, 224, 347, 404
CviQI	GTAC	3 cut(s)	4, 104, 180
DraI	TTTAAA	1 cut(s)	196
EaeI	YGGCCR	1 cut(s)	168
EcoNI	CCTNNNNNAGG	1 cut(s)	279
EcoRII	CCWGG	1 cut(s)	32
FaiI	YATR	2 cut(s)	173, 396
FblI	GTMKAC	1 cut(s)	186
FspBI	CTAG	3 cut(s)	14, 68, 152
HaeIII	GGCC	1 cut(s)	170
HapII	CCGG	1 cut(s)	167
HindIII	AAGCTT	1 cut(s)	402
HinfI	GANTC	1 cut(s)	203
HpaII	CCGG	1 cut(s)	167
HphI	GGTGA	3 cut(s)	91, 325, 331
Hpy166II	GTNNAC	2 cut(s)	187, 291
Hpy188I	TCNGA	2 cut(s)	202, 304
Hpy188III	TCNNGA	1 cut(s)	152
Hpy8I	GTNNAC	2 cut(s)	187, 291
HpyAV	CCTTC	4 cut(s)	279, 304, 310, 376
HpyCH4III	ACNGT	3 cut(s)	56, 79, 184
HpyCH4V	TGCA	1 cut(s)	333
KpnI	GGTACC	1 cut(s)	107
LmnI	GCTCC	1 cut(s)	344
LpnPI	CCDG	7 cut(s)	19, 46, 123, 180, 267, 288, 321
MaeI	CTAG	3 cut(s)	14, 68, 152
MaeIII	GTNAC	1 cut(s)	56
MboII	GAAGA	2 cut(s)	94, 230
MnlI	CCTC	4 cut(s)	117, 117, 152, 298
MroXI	GAANNNNTTC	1 cut(s)	131
MseI	TTAA	3 cut(s)	146, 195, 237
MspI	CCGG	1 cut(s)	167
MspR9I	CCNGG	1 cut(s)	34
MvaI	CCWGG	1 cut(s)	34
NlaIV	GGNNCC	1 cut(s)	105
NmuCI	GTSAC	1 cut(s)	56
PdmI	GAANNNNTTC	1 cut(s)	131
PfeI	GAWTC	1 cut(s)	203
Psp6I	CCWGG	1 cut(s)	32
PspGI	CCWGG	1 cut(s)	32
PspN4I	GGNNCC	1 cut(s)	105
RsaI	GTAC	3 cut(s)	5, 105, 181
RsaNI	GTAC	3 cut(s)	4, 104, 180
SaqAI	TTAA	3 cut(s)	146, 195, 237
ScrFI	CCNGG	1 cut(s)	34
SetI	ASST	8 cut(s)	109, 133, 226, 290, 315, 321, 349, 406
SspI	AATATT	1 cut(s)	10
SspMI	CTAG	3 cut(s)	14, 68, 152
StyD4I	CCNGG	1 cut(s)	32
TaaI	ACNGT	3 cut(s)	56, 79, 184
TatI	WGTACW	1 cut(s)	3
TfiI	GAWTC	1 cut(s)	203
Tru1I	TTAA	3 cut(s)	146, 195, 237
Tru9I	TTAA	3 cut(s)	146, 195, 237
TscAI	CASTG	1 cut(s)	61
TseFI	GTSAC	1 cut(s)	56
Tsp45I	GTSAC	1 cut(s)	56
TspDTI	ATGAA	3 cut(s)	231, 254, 395
TspRI	CASTG	1 cut(s)	61
XagI	CCTNNNNNAGG	1 cut(s)	279
XbaI	TCTAGA	1 cut(s)	151
XcmI	CCANNNNNNNNNTGG	1 cut(s)	40
XmiI	GTMKAC	1 cut(s)	186
XmnI	GAANNNNTTC	1 cut(s)	131
XspI	CTAG	3 cut(s)	14, 68, 152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.