Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001972.1

Orthogroup ID

OG0006238

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 496

Gene Structure 495 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

atgtatgaaaatttctctgagttatacgccattataaaggccactgagaagcttgaaagggcatacattcgcgacgtgatctcttcatcagcgtatgagactgaatgccagaaactcattgctcactttaagactttgtcttccacgcttaaagacaccatcccaagtattgagcgctttgcagatacatataagatggactgcccagcagctataaaccgccttgtgacctctggggttcctgctacagtggagcacagggctgctgcagcttcttccatgacttcatcggctgctgctgtggcagagtgcacacagaatttcattacggcaatggactcgttgaagttgaatatgattgcagttgatcaggtgcaccccctactctcggacctcgcaacatctctcaataagctgacctttctgccaccggatttcttggggaaggtgaagttgaaggaatggattgcaaggctggcaaagatgggcgcagca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

VPS28

Protein Analysis

165

Amino Acids

18.09

Weight (kDa)

6.82

Isoelectric Point (pI)

28.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VPS28	PF03997	5 - 164	2.7e-59	VPS28 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006238)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G05000 AT4G05000 AT4G05000 AT4G21560 AT4G21560 AT4G21560
fragaria_vesca	FvH4_3g04140 FvH4_3g04140 FvH4_3g04140
malus_domestica	MD05G1324500.v1.1 MD10G1302300.v1.1
prunus_persica	Prupe.4G035900_v2.0.a1 Prupe.4G035900_v2.0.a1
pyrus_communis	pycom05g29870 pycom10g25480
rosa_chinensis	RchiOBHm_Chr5g0006591
rosa_laevigata	RLG00000031402
rosa_multiflora	Rmu_sc0001972.1_g000001 Rmu_sc0011154.1_g000006
rosa_roxburghii	Rroxscaffold_1G00069450
rosa_rugosa	Rorug04G0422800 Rorug04G0422800
rosa_samantha	Rh5AG050000 Rh5BG049300 Rh5CG057500 Rh5DG048700
rosa_wichuraiana	Rw5G005010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	35
AccII	CGCG	1 cut(s)	72
AciI	CCGC	1 cut(s)	220
AcsI	RAATTY	2 cut(s)	10, 319
AfeI	AGCGCT	1 cut(s)	176
AfiI	CCNNNNNNNGG	1 cut(s)	388
AgsI	TTSAA	4 cut(s)	56, 346, 352, 457
AjiI	CACGTC	1 cut(s)	76
AluBI	AGCT	4 cut(s)	52, 212, 272, 415
AluI	AGCT	4 cut(s)	52, 212, 272, 415
Alw21I	GWGCWC	3 cut(s)	258, 314, 378
Alw26I	GTCTC	1 cut(s)	92
Alw44I	GTGCAC	2 cut(s)	310, 374
Aor51HI	AGCGCT	1 cut(s)	176
AoxI	GGCC	1 cut(s)	39
ApaLI	GTGCAC	2 cut(s)	310, 374
ApeKI	GCWGC	7 cut(s)	209, 263, 266, 269, 293, 296, 491
ApoI	RAATTY	2 cut(s)	10, 319
AspLEI	GCGC	2 cut(s)	177, 491
AspS9I	GGNCC	1 cut(s)	391
AsuHPI	GGTGA	1 cut(s)	460
AvaII	GGWCC	1 cut(s)	391
BaeGI	GKGCMC	2 cut(s)	314, 378
BbsI	GAAGAC	1 cut(s)	132
Bbv12I	GWGCWC	3 cut(s)	258, 314, 378
BbvI	GCAGC	6 cut(s)	221, 250, 253, 280, 281, 283
BccI	CCATC	3 cut(s)	167, 190, 478
BceAI	ACGGC	1 cut(s)	345
BcgI	CGANNNNNNTGC	2 cut(s)	321, 355
BclI	TGATCA	1 cut(s)	367
BcoDI	GTCTC	1 cut(s)	92
BfmI	CTRYAG	2 cut(s)	246, 267
BfoI	RGCGCY	1 cut(s)	178
BisI	GCNGC	7 cut(s)	210, 264, 267, 270, 294, 297, 492
BlsI	GCNGC	7 cut(s)	211, 265, 268, 271, 295, 298, 493
Bme18I	GGWCC	1 cut(s)	391
BmgBI	CACGTC	1 cut(s)	76
BmgT120I	GGNCC	1 cut(s)	391
BmiI	GGNNCC	1 cut(s)	240
BpiI	GAAGAC	1 cut(s)	132
BsaWI	WCCGGW	1 cut(s)	430
Bsc4I	CCNNNNNNNGG	1 cut(s)	388
Bse3DI	GCAATG	2 cut(s)	117, 339
BseGI	GGATG	1 cut(s)	159
BseLI	CCNNNNNNNGG	1 cut(s)	388
BseMI	GCAATG	2 cut(s)	117, 339
BseMII	CTCAG	2 cut(s)	9, 36
BseSI	GKGCMC	2 cut(s)	314, 378
BseXI	GCAGC	6 cut(s)	221, 250, 253, 280, 281, 283
BseYI	CCCAGC	1 cut(s)	205
Bsh1236I	CGCG	1 cut(s)	72
BshFI	GGCC	1 cut(s)	41
BsiHKAI	GWGCWC	3 cut(s)	258, 314, 378
BsiSI	CCGG	1 cut(s)	431
BslI	CCNNNNNNNGG	1 cut(s)	388
BsmAI	GTCTC	1 cut(s)	92
BsmI	GAATGC	1 cut(s)	110
BsnI	GGCC	1 cut(s)	41
Bsp1286I	GDGCHC	3 cut(s)	258, 314, 378
Bsp143I	GATC	2 cut(s)	78, 367
Bsp68I	TCGCGA	1 cut(s)	72
BspACI	CCGC	1 cut(s)	220
BspANI	GGCC	1 cut(s)	41
BspCNI	CTCAG	2 cut(s)	10, 37
BspFNI	CGCG	1 cut(s)	72
BspLI	GGNNCC	1 cut(s)	240
BspMAI	CTGCAG	1 cut(s)	271
BsrDI	GCAATG	2 cut(s)	117, 339
BssMI	GATC	2 cut(s)	78, 367
Bst4CI	ACNGT	1 cut(s)	250
Bst6I	CTCTTC	1 cut(s)	88
BstC8I	GCNNGC	1 cut(s)	477
BstDEI	CTNAG	2 cut(s)	18, 45
BstF5I	GGATG	1 cut(s)	159
BstFNI	CGCG	1 cut(s)	72
BstH2I	RGCGCY	1 cut(s)	178
BstHHI	GCGC	2 cut(s)	177, 491
BstKTI	GATC	2 cut(s)	81, 370
BstMAI	GTCTC	1 cut(s)	92
BstMBI	GATC	2 cut(s)	78, 367
BstMWI	GCNNNNNNNGC	3 cut(s)	269, 302, 476
BstSFI	CTRYAG	2 cut(s)	246, 267
BstSLI	GKGCMC	2 cut(s)	314, 378
BstUI	CGCG	1 cut(s)	72
BstV1I	GCAGC	6 cut(s)	221, 250, 253, 280, 281, 283
BstV2I	GAAGAC	1 cut(s)	132
BsuRI	GGCC	1 cut(s)	41
BtrI	CACGTC	1 cut(s)	76
BtsCI	GGATG	1 cut(s)	159
BtsIMutI	CAGTG	2 cut(s)	42, 255
BtuMI	TCGCGA	1 cut(s)	72
Cac8I	GCNNGC	1 cut(s)	477
CfoI	GCGC	2 cut(s)	177, 491
Cfr13I	GGNCC	1 cut(s)	391
CviAII	CATG	1 cut(s)	280
CviJI	RGCY	8 cut(s)	41, 52, 212, 263, 272, 293, 415, 475
CviKI_1	RGCY	8 cut(s)	41, 52, 212, 263, 272, 293, 415, 475
DdeI	CTNAG	2 cut(s)	18, 45
DpnI	GATC	2 cut(s)	80, 369
DpnII	GATC	2 cut(s)	78, 367
Eam1104I	CTCTTC	1 cut(s)	88
EarI	CTCTTC	1 cut(s)	88
Eco47I	GGWCC	1 cut(s)	391
Eco47III	AGCGCT	1 cut(s)	176
FaeI	CATG	1 cut(s)	283
FalI	AAGNNNNNCTT	2 cut(s)	404, 436
FatI	CATG	1 cut(s)	279
FbaI	TGATCA	1 cut(s)	367
Fnu4HI	GCNGC	7 cut(s)	210, 264, 267, 270, 294, 297, 492
FokI	GGATG	1 cut(s)	146
Fsp4HI	GCNGC	7 cut(s)	210, 264, 267, 270, 294, 297, 492
GlaI	GCGC	2 cut(s)	176, 490
GluI	GCNGC	7 cut(s)	210, 264, 267, 270, 294, 297, 492
GsaI	CCCAGC	1 cut(s)	209
HaeII	RGCGCY	1 cut(s)	178
HaeIII	GGCC	1 cut(s)	41
HapII	CCGG	1 cut(s)	431
HhaI	GCGC	2 cut(s)	177, 491
Hin1II	CATG	1 cut(s)	283
Hin6I	GCGC	2 cut(s)	175, 489
HinP1I	GCGC	2 cut(s)	175, 489
HindIII	AAGCTT	1 cut(s)	50
HinfI	GANTC	1 cut(s)	338
HpaII	CCGG	1 cut(s)	431
HphI	GGTGA	1 cut(s)	460
Hpy166II	GTNNAC	2 cut(s)	312, 376
Hpy188I	TCNGA	2 cut(s)	19, 391
Hpy188III	TCNNGA	1 cut(s)	71
Hpy8I	GTNNAC	2 cut(s)	312, 376
Hpy99I	CGWCG	1 cut(s)	77
HpyAV	CCTTC	2 cut(s)	439, 451
HpyCH4III	ACNGT	1 cut(s)	250
HpyCH4IV	ACGT	1 cut(s)	75
HpyCH4V	TGCA	6 cut(s)	182, 269, 312, 362, 376, 470
HpyF10VI	GCNNNNNNNGC	3 cut(s)	269, 302, 476
HpyF3I	CTNAG	2 cut(s)	18, 45
HpySE526I	ACGT	1 cut(s)	75
Hsp92II	CATG	1 cut(s)	283
HspAI	GCGC	2 cut(s)	175, 489
Ksp22I	TGATCA	1 cut(s)	367
Kzo9I	GATC	2 cut(s)	78, 367
LmnI	GCTCC	1 cut(s)	253
LpnPI	CCDG	8 cut(s)	122, 219, 219, 244, 255, 356, 444, 461
Lsp1109I	GCAGC	6 cut(s)	221, 250, 253, 280, 281, 283
MaeII	ACGT	1 cut(s)	75
MaeIII	GTNAC	1 cut(s)	226
MalI	GATC	2 cut(s)	80, 369
MboI	GATC	2 cut(s)	78, 367
MboII	GAAGA	3 cut(s)	75, 132, 267
MhlI	GDGCHC	3 cut(s)	258, 314, 378
MluCI	AATT	2 cut(s)	10, 319
MlyI	GAGTC	1 cut(s)	332
MnlI	CCTC	2 cut(s)	241, 404
MseI	TTAA	2 cut(s)	129, 150
MspI	CCGG	1 cut(s)	431
Mva1269I	GAATGC	1 cut(s)	110
MvnI	CGCG	1 cut(s)	72
MwoI	GCNNNNNNNGC	3 cut(s)	269, 302, 476
NdeII	GATC	2 cut(s)	78, 367
NlaIII	CATG	1 cut(s)	283
NlaIV	GGNNCC	1 cut(s)	240
NmuCI	GTSAC	1 cut(s)	226
NruI	TCGCGA	1 cut(s)	72
PctI	GAATGC	1 cut(s)	110
PflFI	GACNNNGTC	1 cut(s)	136
PkrI	GCNGC	7 cut(s)	211, 265, 268, 271, 295, 298, 493
PleI	GAGTC	1 cut(s)	332
PpsI	GAGTC	1 cut(s)	332
PsiI	TTATAA	1 cut(s)	35
PspFI	CCCAGC	1 cut(s)	205
PspN4I	GGNNCC	1 cut(s)	240
PspPI	GGNCC	1 cut(s)	391
PstI	CTGCAG	1 cut(s)	271
PsyI	GACNNNGTC	1 cut(s)	136
RruI	TCGCGA	1 cut(s)	72
SaqAI	TTAA	2 cut(s)	129, 150
SatI	GCNGC	7 cut(s)	210, 264, 267, 270, 294, 297, 492
Sau3AI	GATC	2 cut(s)	78, 367
Sau96I	GGNCC	1 cut(s)	391
SchI	GAGTC	1 cut(s)	332
SduI	GDGCHC	3 cut(s)	258, 314, 378
SfcI	CTRYAG	2 cut(s)	246, 267
SinI	GGWCC	1 cut(s)	391
Sse9I	AATT	2 cut(s)	10, 319
SsiI	CCGC	1 cut(s)	220
TaaI	ACNGT	1 cut(s)	250
TaiI	ACGT	1 cut(s)	78
TasI	AATT	2 cut(s)	10, 319
Tru1I	TTAA	2 cut(s)	129, 150
Tru9I	TTAA	2 cut(s)	129, 150
TscAI	CASTG	2 cut(s)	49, 255
TseFI	GTSAC	1 cut(s)	226
TseI	GCWGC	7 cut(s)	209, 263, 266, 269, 293, 296, 491
Tsp45I	GTSAC	1 cut(s)	226
TspDTI	ATGAA	4 cut(s)	21, 75, 276, 313
TspRI	CASTG	2 cut(s)	49, 255
Tth111I	GACNNNGTC	1 cut(s)	136
VneI	GTGCAC	2 cut(s)	310, 374
VpaK11BI	GGWCC	1 cut(s)	391
XapI	RAATTY	2 cut(s)	10, 319

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.