Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002028.1

Orthogroup ID

OG0023078

Physical Location & Seq

Genomic Coordinates Reverse (-)

28643 .. 29112

Gene Structure 470 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002028.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

atgagcttcctcgacttacgctcctccgccactccctcaaccccctacaaaggcgtcactacctccgacgtcaccgtcgaccaaacccgcaacctctgccccgactcctacgcctacgacgccgtctgccacaaattggcctgcgaaatccccgctgtcgtagtctccgtcaactaccacctctccccggagcacggctacccctgccagtacgacgacggcctcgacgtcctccaattcctcgaccaaaaccccgactccctcctcgacctcgctgactgctcccgctgcttcctcgccggagacagcgccggggcgaacattgcccaccatgtggcggtgcgagcctgccgcgagccgtttcgggttgatatcgatccagaaaacccagaaacccagtggctttcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009056 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0016043 GO:0016049 GO:0016787 GO:0016788 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0044706 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0052689 GO:0060560 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko04075 ko05134 map04075 map05134

Pfam Domains

Protein Families

Abhydrolase_3

Protein Analysis

136

Amino Acids

14.95

Weight (kDa)

4.43

Isoelectric Point (pI)

52.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0023078)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002028.1_g000006 Rmu_sc0003078.1_g000007 Rmu_sc0006986.1_g000021 Rmu_sc0017397.1_g000005

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	74
AatII	GACGTC	2 cut(s)	72, 231
AccB7I	CCANNNNNTGG	2 cut(s)	136, 334
AccI	GTMKAC	1 cut(s)	78
AccII	CGCG	1 cut(s)	354
AciI	CCGC	6 cut(s)	27, 88, 153, 286, 338, 352
AclWI	GGATC	1 cut(s)	371
AcyI	GRCGYC	4 cut(s)	54, 69, 120, 228
AdeI	CACNNNGTG	1 cut(s)	334
AfaI	GTAC	1 cut(s)	212
AfiI	CCNNNNNNNGG	6 cut(s)	50, 136, 187, 194, 334, 337
AluBI	AGCT	1 cut(s)	6
AluI	AGCT	1 cut(s)	6
Alw21I	GWGCWC	1 cut(s)	195
Alw26I	GTCTC	2 cut(s)	169, 297
AlwI	GGATC	1 cut(s)	371
AoxI	GGCC	2 cut(s)	138, 220
ApeKI	GCWGC	1 cut(s)	288
AspLEI	GCGC	1 cut(s)	311
AsuC2I	CCSGG	2 cut(s)	188, 313
AsuHPI	GGTGA	1 cut(s)	64
Bbv12I	GWGCWC	1 cut(s)	195
BbvI	GCAGC	1 cut(s)	275
BceAI	ACGGC	4 cut(s)	107, 211, 235, 343
BcnI	CCSGG	2 cut(s)	188, 313
BcoDI	GTCTC	2 cut(s)	169, 297
BfoI	RGCGCY	1 cut(s)	312
BisI	GCNGC	2 cut(s)	289, 352
BlsI	GCNGC	2 cut(s)	290, 353
Bme1390I	CCNGG	2 cut(s)	188, 313
BmrFI	CCNGG	2 cut(s)	188, 313
BmrI	ACTGGG	1 cut(s)	391
BmuI	ACTGGG	1 cut(s)	391
BpuMI	CCSGG	2 cut(s)	188, 313
Bsa29I	ATCGAT	1 cut(s)	375
BsaBI	GATNNNNATC	1 cut(s)	375
BsaHI	GRCGYC	4 cut(s)	54, 69, 120, 228
BsaJI	CCNNGG	2 cut(s)	186, 312
BsaXI	ACNNNNNCTCC	6 cut(s)	5, 35, 167, 197, 242, 272
Bsc4I	CCNNNNNNNGG	6 cut(s)	50, 136, 187, 194, 334, 337
Bse1I	ACTGG	2 cut(s)	208, 397
Bse3DI	GCAATG	1 cut(s)	321
Bse8I	GATNNNNATC	1 cut(s)	375
BseCI	ATCGAT	1 cut(s)	375
BseDI	CCNNGG	2 cut(s)	186, 312
BseJI	GATNNNNATC	1 cut(s)	375
BseLI	CCNNNNNNNGG	6 cut(s)	50, 136, 187, 194, 334, 337
BseMI	GCAATG	1 cut(s)	321
BseNI	ACTGG	2 cut(s)	208, 397
BseRI	GAGGAG	2 cut(s)	13, 254
BseXI	GCAGC	1 cut(s)	275
Bsh1236I	CGCG	1 cut(s)	354
BshFI	GGCC	2 cut(s)	140, 222
BshVI	ATCGAT	1 cut(s)	375
BsiHKAI	GWGCWC	1 cut(s)	195
BsiSI	CCGG	3 cut(s)	188, 300, 312
BslI	CCNNNNNNNGG	6 cut(s)	50, 136, 187, 194, 334, 337
BsmAI	GTCTC	2 cut(s)	169, 297
BsnI	GGCC	2 cut(s)	140, 222
Bsp1286I	GDGCHC	1 cut(s)	195
Bsp143I	GATC	1 cut(s)	376
BspACI	CCGC	6 cut(s)	27, 88, 153, 286, 338, 352
BspANI	GGCC	2 cut(s)	140, 222
BspDI	ATCGAT	1 cut(s)	375
BspFNI	CGCG	1 cut(s)	354
BspPI	GGATC	1 cut(s)	371
BsrDI	GCAATG	1 cut(s)	321
BsrI	ACTGG	2 cut(s)	208, 397
BssECI	CCNNGG	2 cut(s)	186, 312
BssMI	GATC	1 cut(s)	376
BssNI	GRCGYC	4 cut(s)	54, 69, 120, 228
Bst4CI	ACNGT	1 cut(s)	76
BstACI	GRCGYC	4 cut(s)	54, 69, 120, 228
BstAPI	GCANNNNNTGC	1 cut(s)	96
BstC8I	GCNNGC	4 cut(s)	142, 345, 349, 356
BstFNI	CGCG	1 cut(s)	354
BstH2I	RGCGCY	1 cut(s)	312
BstHHI	GCGC	1 cut(s)	311
BstKTI	GATC	1 cut(s)	379
BstMAI	GTCTC	2 cut(s)	169, 297
BstMBI	GATC	1 cut(s)	376
BstMWI	GCNNNNNNNGC	6 cut(s)	96, 119, 204, 288, 323, 344
BstSCI	CCNGG	2 cut(s)	186, 311
BstUI	CGCG	1 cut(s)	354
BstV1I	GCAGC	1 cut(s)	275
Bsu15I	ATCGAT	1 cut(s)	375
BsuRI	GGCC	2 cut(s)	140, 222
BsuTUI	ATCGAT	1 cut(s)	375
BtsIMutI	CAGTG	1 cut(s)	404
Cac8I	GCNNGC	4 cut(s)	142, 345, 349, 356
CfoI	GCGC	1 cut(s)	311
ClaI	ATCGAT	1 cut(s)	375
CseI	GACGC	2 cut(s)	43, 128
Csp6I	GTAC	1 cut(s)	211
CviAII	CATG	1 cut(s)	332
CviJI	RGCY	7 cut(s)	6, 140, 198, 222, 347, 358, 403
CviKI_1	RGCY	7 cut(s)	6, 140, 198, 222, 347, 358, 403
CviQI	GTAC	1 cut(s)	211
DpnI	GATC	1 cut(s)	378
DpnII	GATC	1 cut(s)	376
DraIII	CACNNNGTG	1 cut(s)	334
DrdI	GACNNNNNNGTC	1 cut(s)	74
DseDI	GACNNNNNNGTC	1 cut(s)	74
EciI	GGCGGA	1 cut(s)	16
Eco32I	GATATC	1 cut(s)	373
EcoRV	GATATC	1 cut(s)	373
FaeI	CATG	1 cut(s)	335
FaiI	YATR	1 cut(s)	333
FatI	CATG	1 cut(s)	331
FauI	CCCGC	3 cut(s)	95, 160, 293
FblI	GTMKAC	1 cut(s)	78
Fnu4HI	GCNGC	2 cut(s)	289, 352
Fsp4HI	GCNGC	2 cut(s)	289, 352
GlaI	GCGC	1 cut(s)	310
GluI	GCNGC	2 cut(s)	289, 352
HaeII	RGCGCY	1 cut(s)	312
HaeIII	GGCC	2 cut(s)	140, 222
HapII	CCGG	3 cut(s)	188, 300, 312
HgaI	GACGC	2 cut(s)	43, 128
HhaI	GCGC	1 cut(s)	311
Hin1I	GRCGYC	4 cut(s)	54, 69, 120, 228
Hin1II	CATG	1 cut(s)	335
Hin6I	GCGC	1 cut(s)	309
HinP1I	GCGC	1 cut(s)	309
HincII	GTYRAC	2 cut(s)	79, 172
HindII	GTYRAC	2 cut(s)	79, 172
HinfI	GANTC	2 cut(s)	104, 257
HpaII	CCGG	3 cut(s)	188, 300, 312
HphI	GGTGA	1 cut(s)	64
Hpy166II	GTNNAC	2 cut(s)	79, 172
Hpy188I	TCNGA	1 cut(s)	67
Hpy188III	TCNNGA	2 cut(s)	380, 408
Hpy8I	GTNNAC	2 cut(s)	79, 172
Hpy99I	CGWCG	6 cut(s)	71, 80, 122, 218, 221, 230
HpyCH4III	ACNGT	1 cut(s)	76
HpyCH4IV	ACGT	2 cut(s)	69, 228
HpyF10VI	GCNNNNNNNGC	6 cut(s)	96, 119, 204, 288, 323, 344
HpySE526I	ACGT	2 cut(s)	69, 228
Hsp92I	GRCGYC	4 cut(s)	54, 69, 120, 228
Hsp92II	CATG	1 cut(s)	335
HspAI	GCGC	1 cut(s)	309
Kzo9I	GATC	1 cut(s)	376
LmnI	GCTCC	3 cut(s)	26, 190, 287
LpnPI	CCDG	9 cut(s)	154, 201, 217, 221, 313, 325, 361, 393, 402
Lsp1109I	GCAGC	1 cut(s)	275
MaeII	ACGT	2 cut(s)	69, 228
MaeIII	GTNAC	2 cut(s)	55, 70
MalI	GATC	1 cut(s)	378
MboI	GATC	1 cut(s)	376
MhlI	GDGCHC	1 cut(s)	195
MluCI	AATT	2 cut(s)	134, 236
MlyI	GAGTC	2 cut(s)	98, 251
MmeI	TCCRAC	1 cut(s)	90
MspA1I	CMGCKG	2 cut(s)	155, 288
MspI	CCGG	3 cut(s)	188, 300, 312
MspR9I	CCNGG	2 cut(s)	188, 313
MvnI	CGCG	1 cut(s)	354
MwoI	GCNNNNNNNGC	6 cut(s)	96, 119, 204, 288, 323, 344
NciI	CCSGG	2 cut(s)	188, 313
NdeII	GATC	1 cut(s)	376
NlaIII	CATG	1 cut(s)	335
NmuCI	GTSAC	2 cut(s)	55, 70
PcsI	WCGNNNNNNNCGW	4 cut(s)	75, 165, 222, 225
PflFI	GACNNNGTC	1 cut(s)	122
PflMI	CCANNNNNTGG	2 cut(s)	136, 334
PkrI	GCNGC	2 cut(s)	290, 353
PleI	GAGTC	2 cut(s)	98, 251
PpsI	GAGTC	2 cut(s)	98, 251
PsyI	GACNNNGTC	1 cut(s)	122
RsaI	GTAC	1 cut(s)	212
RsaNI	GTAC	1 cut(s)	211
SalI	GTCGAC	1 cut(s)	77
SatI	GCNGC	2 cut(s)	289, 352
Sau3AI	GATC	1 cut(s)	376
SchI	GAGTC	2 cut(s)	98, 251
ScrFI	CCNGG	2 cut(s)	188, 313
SduI	GDGCHC	1 cut(s)	195
SetI	ASST	7 cut(s)	8, 65, 72, 96, 183, 231, 273
Sse9I	AATT	2 cut(s)	134, 236
SsiI	CCGC	6 cut(s)	27, 88, 153, 286, 338, 352
StyD4I	CCNGG	2 cut(s)	186, 311
TaaI	ACNGT	1 cut(s)	76
TaiI	ACGT	2 cut(s)	72, 231
TaqI	TCGA	6 cut(s)	12, 78, 225, 243, 267, 375
TasI	AATT	2 cut(s)	134, 236
TauI	GCSGC	1 cut(s)	354
TscAI	CASTG	1 cut(s)	404
TseFI	GTSAC	2 cut(s)	55, 70
TseI	GCWGC	1 cut(s)	288
Tsp45I	GTSAC	2 cut(s)	55, 70
TspGWI	ACGGA	1 cut(s)	157
TspRI	CASTG	1 cut(s)	404
Tth111I	GACNNNGTC	1 cut(s)	122
Van91I	CCANNNNNTGG	2 cut(s)	136, 334
XcmI	CCANNNNNNNNNTGG	1 cut(s)	396
XmiI	GTMKAC	1 cut(s)	78
ZraI	GACGTC	2 cut(s)	70, 229

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.