Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017397.1

Orthogroup ID

OG0023078

Physical Location & Seq

Genomic Coordinates Reverse (-)

15898 .. 16781

Gene Structure 884 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017397.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

atgaaagacaaagggaaaatcgtccgtacagtacctgacctttgccccattctaaacttcagtacctcacgttcagataatatcaaaacggtacctcaggttctgagcccgaccgaagaatgtcccaacaatccactccctcctcctgggttttgctcccttggaggacccttaactgacgccgctcgccgaccaaacggcaccatcaaccgccgtctcatgagcttcctcgacttacgcttctccgccgctccctcaaccccctacaaaggcgtcaccacctccgacgtcaccgtcgaccaaacccgcaacctctgccccgactcctacgcctacgacgccgtctgcctcaaattggcccgcgaaatccccgccgtcgtagtctccgtcaactaccacctctccccggagcaaggctacccctgccagtacgacgacggcctcgacaaattcctcgaccaaaaccccgactccctcctcgacctcgctgactgctcccgctgcttcctcgccggagacagcgccggcgcgaacattgcccaccacgtggcggtgcgagccgtttcgggttgtgaaaccaatcgggttgatatcgatccagaaaacccagaaacccagtggctttcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009056 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0016043 GO:0016049 GO:0016787 GO:0016788 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0044706 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0052689 GO:0060560 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko04075 ko05134 map04075 map05134

Pfam Domains

Protein Families

Abhydrolase_3

Protein Analysis

209

Amino Acids

22.74

Weight (kDa)

4.9

Isoelectric Point (pI)

48.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0023078)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002028.1_g000006 Rmu_sc0003078.1_g000007 Rmu_sc0006986.1_g000021 Rmu_sc0017397.1_g000005

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	293
AatII	GACGTC	1 cut(s)	291
Acc65I	GGTACC	1 cut(s)	91
AccB1I	GGYRCC	2 cut(s)	91, 200
AccB7I	CCANNNNNTGG	1 cut(s)	547
AccBSI	CCGCTC	2 cut(s)	185, 251
AccI	GTMKAC	1 cut(s)	297
AccII	CGCG	2 cut(s)	363, 530
AciI	CCGC	9 cut(s)	183, 211, 246, 249, 307, 361, 372, 499, 551
AclWI	GGATC	1 cut(s)	590
AcsI	RAATTY	1 cut(s)	449
AcuI	CTGAAG	1 cut(s)	43
AcvI	CACGTG	1 cut(s)	547
AcyI	GRCGYC	4 cut(s)	180, 273, 288, 339
AdeI	CACNNNGTG	1 cut(s)	547
AfaI	GTAC	5 cut(s)	28, 33, 64, 93, 431
AfiI	CCNNNNNNNGG	7 cut(s)	146, 269, 355, 406, 413, 547, 550
AjnI	CCWGG	1 cut(s)	145
AluBI	AGCT	1 cut(s)	225
AluI	AGCT	1 cut(s)	225
Alw26I	GTCTC	3 cut(s)	221, 388, 510
AlwI	GGATC	1 cut(s)	590
AlwNI	CAGNNNCTG	2 cut(s)	35, 103
AoxI	GGCC	2 cut(s)	357, 439
ApeKI	GCWGC	1 cut(s)	501
ApoI	RAATTY	1 cut(s)	449
Asp718I	GGTACC	1 cut(s)	91
AspLEI	GCGC	2 cut(s)	524, 530
AspS9I	GGNCC	2 cut(s)	167, 358
AsuC2I	CCSGG	1 cut(s)	407
AsuHPI	GGTGA	2 cut(s)	268, 283
AvaII	GGWCC	1 cut(s)	167
AxyI	CCTNAGG	1 cut(s)	96
BaeI	ACNNNNGTAYC	2 cut(s)	46, 79
BanI	GGYRCC	2 cut(s)	91, 200
BanII	GRGCYC	1 cut(s)	110
BbrPI	CACGTG	1 cut(s)	547
BbvI	GCAGC	1 cut(s)	488
BccI	CCATC	1 cut(s)	212
BceAI	ACGGC	6 cut(s)	198, 214, 326, 359, 454, 545
BciT130I	CCWGG	1 cut(s)	147
BcnI	CCSGG	1 cut(s)	407
BcoDI	GTCTC	3 cut(s)	221, 388, 510
BfoI	RGCGCY	1 cut(s)	525
BisI	GCNGC	3 cut(s)	183, 249, 502
BlsI	GCNGC	3 cut(s)	184, 250, 503
Bme1390I	CCNGG	2 cut(s)	147, 407
Bme18I	GGWCC	1 cut(s)	167
BmgT120I	GGNCC	2 cut(s)	167, 358
BmiI	GGNNCC	3 cut(s)	93, 169, 202
BmrFI	CCNGG	2 cut(s)	147, 407
BmrI	ACTGGG	1 cut(s)	610
BmuI	ACTGGG	1 cut(s)	610
BpuMI	CCSGG	1 cut(s)	407
Bsa29I	ATCGAT	1 cut(s)	594
BsaAI	YACGTR	1 cut(s)	547
BsaBI	GATNNNNATC	1 cut(s)	594
BsaHI	GRCGYC	4 cut(s)	180, 273, 288, 339
BsaJI	CCNNGG	3 cut(s)	146, 160, 405
BsaXI	ACNNNNNCTCC	4 cut(s)	386, 416, 455, 485
Bsc4I	CCNNNNNNNGG	7 cut(s)	146, 269, 355, 406, 413, 547, 550
Bse118I	RCCGGY	1 cut(s)	524
Bse1I	ACTGG	2 cut(s)	427, 616
Bse21I	CCTNAGG	1 cut(s)	96
Bse3DI	GCAATG	1 cut(s)	534
Bse8I	GATNNNNATC	1 cut(s)	594
BseBI	CCWGG	1 cut(s)	147
BseCI	ATCGAT	1 cut(s)	594
BseDI	CCNNGG	3 cut(s)	146, 160, 405
BseJI	GATNNNNATC	1 cut(s)	594
BseLI	CCNNNNNNNGG	7 cut(s)	146, 269, 355, 406, 413, 547, 550
BseMI	GCAATG	1 cut(s)	534
BseMII	CTCAG	2 cut(s)	95, 110
BseNI	ACTGG	2 cut(s)	427, 616
BseRI	GAGGAG	2 cut(s)	132, 467
BseXI	GCAGC	1 cut(s)	488
Bsh1236I	CGCG	2 cut(s)	363, 530
Bsh1285I	CGRYCG	1 cut(s)	114
BshFI	GGCC	2 cut(s)	359, 441
BshNI	GGYRCC	2 cut(s)	91, 200
BshVI	ATCGAT	1 cut(s)	594
BsiEI	CGRYCG	1 cut(s)	114
BsiSI	CCGG	3 cut(s)	407, 513, 525
BslFI	GGGAC	1 cut(s)	108
BslI	CCNNNNNNNGG	7 cut(s)	146, 269, 355, 406, 413, 547, 550
BsmAI	GTCTC	3 cut(s)	221, 388, 510
BsmBI	CGTCTC	1 cut(s)	221
BsmFI	GGGAC	1 cut(s)	108
BsnI	GGCC	2 cut(s)	359, 441
Bsp1286I	GDGCHC	1 cut(s)	110
Bsp143I	GATC	1 cut(s)	595
BspACI	CCGC	9 cut(s)	183, 211, 246, 249, 307, 361, 372, 499, 551
BspANI	GGCC	2 cut(s)	359, 441
BspCNI	CTCAG	2 cut(s)	96, 109
BspDI	ATCGAT	1 cut(s)	594
BspFNI	CGCG	2 cut(s)	363, 530
BspHI	TCATGA	1 cut(s)	219
BspLI	GGNNCC	3 cut(s)	93, 169, 202
BspPI	GGATC	1 cut(s)	590
BspT107I	GGYRCC	2 cut(s)	91, 200
BsrBI	CCGCTC	2 cut(s)	185, 251
BsrDI	GCAATG	1 cut(s)	534
BsrFI	RCCGGY	1 cut(s)	524
BsrI	ACTGG	2 cut(s)	427, 616
BssAI	RCCGGY	1 cut(s)	524
BssECI	CCNNGG	3 cut(s)	146, 160, 405
BssMI	GATC	1 cut(s)	595
BssNI	GRCGYC	4 cut(s)	180, 273, 288, 339
BssT1I	CCWWGG	1 cut(s)	160
Bst2UI	CCWGG	1 cut(s)	147
Bst4CI	ACNGT	3 cut(s)	31, 91, 295
BstACI	GRCGYC	4 cut(s)	180, 273, 288, 339
BstAPI	GCANNNNNTGC	1 cut(s)	315
BstBAI	YACGTR	1 cut(s)	547
BstC8I	GCNNGC	4 cut(s)	187, 361, 526, 558
BstDEI	CTNAG	2 cut(s)	96, 104
BstFNI	CGCG	2 cut(s)	363, 530
BstH2I	RGCGCY	1 cut(s)	525
BstHHI	GCGC	2 cut(s)	524, 530
BstKTI	GATC	1 cut(s)	598
BstMAI	GTCTC	3 cut(s)	221, 388, 510
BstMBI	GATC	1 cut(s)	595
BstMCI	CGRYCG	1 cut(s)	114
BstMWI	GCNNNNNNNGC	6 cut(s)	315, 338, 423, 501, 536, 557
BstNI	CCWGG	1 cut(s)	147
BstSCI	CCNGG	2 cut(s)	145, 405
BstUI	CGCG	2 cut(s)	363, 530
BstV1I	GCAGC	1 cut(s)	488
Bsu15I	ATCGAT	1 cut(s)	594
Bsu36I	CCTNAGG	1 cut(s)	96
BsuRI	GGCC	2 cut(s)	359, 441
BsuTUI	ATCGAT	1 cut(s)	594
BtsIMutI	CAGTG	1 cut(s)	623
Cac8I	GCNNGC	4 cut(s)	187, 361, 526, 558
CaiI	CAGNNNCTG	2 cut(s)	35, 103
CciI	TCATGA	1 cut(s)	219
CfoI	GCGC	2 cut(s)	524, 530
Cfr10I	RCCGGY	1 cut(s)	524
Cfr13I	GGNCC	2 cut(s)	167, 358
ClaI	ATCGAT	1 cut(s)	594
CseI	GACGC	3 cut(s)	188, 262, 347
Csp6I	GTAC	5 cut(s)	27, 32, 63, 92, 430
CviAII	CATG	1 cut(s)	220
CviJI	RGCY	7 cut(s)	108, 225, 359, 417, 441, 560, 622
CviKI_1	RGCY	7 cut(s)	108, 225, 359, 417, 441, 560, 622
CviQI	GTAC	5 cut(s)	27, 32, 63, 92, 430
DdeI	CTNAG	2 cut(s)	96, 104
DpnI	GATC	1 cut(s)	597
DpnII	GATC	1 cut(s)	595
DraIII	CACNNNGTG	1 cut(s)	547
DrdI	GACNNNNNNGTC	1 cut(s)	293
DseDI	GACNNNNNNGTC	1 cut(s)	293
EciI	GGCGGA	1 cut(s)	235
Eco130I	CCWWGG	1 cut(s)	160
Eco24I	GRGCYC	1 cut(s)	110
Eco32I	GATATC	1 cut(s)	592
Eco47I	GGWCC	1 cut(s)	167
Eco57I	CTGAAG	1 cut(s)	43
Eco72I	CACGTG	1 cut(s)	547
Eco81I	CCTNAGG	1 cut(s)	96
EcoO109I	RGGNCCY	1 cut(s)	167
EcoRII	CCWGG	1 cut(s)	145
EcoRV	GATATC	1 cut(s)	592
EcoT14I	CCWWGG	1 cut(s)	160
EcoT38I	GRGCYC	1 cut(s)	110
ErhI	CCWWGG	1 cut(s)	160
Esp3I	CGTCTC	1 cut(s)	221
FaeI	CATG	1 cut(s)	223
FaiI	YATR	1 cut(s)	221
FaqI	GGGAC	1 cut(s)	108
FatI	CATG	1 cut(s)	219
FauI	CCCGC	4 cut(s)	314, 368, 379, 506
FblI	GTMKAC	1 cut(s)	297
Fnu4HI	GCNGC	3 cut(s)	183, 249, 502
FriOI	GRGCYC	1 cut(s)	110
Fsp4HI	GCNGC	3 cut(s)	183, 249, 502
GlaI	GCGC	2 cut(s)	523, 529
GluI	GCNGC	3 cut(s)	183, 249, 502
HaeII	RGCGCY	1 cut(s)	525
HaeIII	GGCC	2 cut(s)	359, 441
HapII	CCGG	3 cut(s)	407, 513, 525
HgaI	GACGC	3 cut(s)	188, 262, 347
HhaI	GCGC	2 cut(s)	524, 530
Hin1I	GRCGYC	4 cut(s)	180, 273, 288, 339
Hin1II	CATG	1 cut(s)	223
Hin6I	GCGC	2 cut(s)	522, 528
HinP1I	GCGC	2 cut(s)	522, 528
HincII	GTYRAC	2 cut(s)	298, 391
HindII	GTYRAC	2 cut(s)	298, 391
HinfI	GANTC	2 cut(s)	323, 470
HpaII	CCGG	3 cut(s)	407, 513, 525
HphI	GGTGA	2 cut(s)	268, 283
Hpy166II	GTNNAC	2 cut(s)	298, 391
Hpy188I	TCNGA	3 cut(s)	76, 105, 286
Hpy188III	TCNNGA	3 cut(s)	220, 599, 627
Hpy8I	GTNNAC	2 cut(s)	298, 391
Hpy99I	CGWCG	6 cut(s)	290, 299, 341, 380, 437, 440
HpyCH4III	ACNGT	3 cut(s)	31, 91, 295
HpyCH4IV	ACGT	3 cut(s)	70, 288, 546
HpyF10VI	GCNNNNNNNGC	6 cut(s)	315, 338, 423, 501, 536, 557
HpyF3I	CTNAG	2 cut(s)	96, 104
HpySE526I	ACGT	3 cut(s)	70, 288, 546
Hsp92I	GRCGYC	4 cut(s)	180, 273, 288, 339
Hsp92II	CATG	1 cut(s)	223
HspAI	GCGC	2 cut(s)	522, 528
KpnI	GGTACC	1 cut(s)	95
KroI	GCCGGC	1 cut(s)	524
KroNI	GCCGGC	1 cut(s)	526
Kzo9I	GATC	1 cut(s)	595
LmnI	GCTCC	4 cut(s)	161, 256, 409, 500
Lsp1109I	GCAGC	1 cut(s)	488
MaeII	ACGT	3 cut(s)	70, 288, 546
MaeIII	GTNAC	2 cut(s)	274, 289
MalI	GATC	1 cut(s)	597
MbiI	CCGCTC	2 cut(s)	185, 251
MboI	GATC	1 cut(s)	595
MboII	GAAGA	1 cut(s)	128
MhlI	GDGCHC	1 cut(s)	110
MluCI	AATT	2 cut(s)	353, 449
MlyI	GAGTC	2 cut(s)	317, 464
MmeI	TCCRAC	1 cut(s)	309
MreI	CGCCGGCG	1 cut(s)	524
MroNI	GCCGGC	1 cut(s)	524
MseI	TTAA	1 cut(s)	173
MspA1I	CMGCKG	1 cut(s)	501
MspI	CCGG	3 cut(s)	407, 513, 525
MspR9I	CCNGG	2 cut(s)	147, 407
MvaI	CCWGG	1 cut(s)	147
MvnI	CGCG	2 cut(s)	363, 530
MwoI	GCNNNNNNNGC	6 cut(s)	315, 338, 423, 501, 536, 557
NaeI	GCCGGC	1 cut(s)	526
NciI	CCSGG	1 cut(s)	407
NdeII	GATC	1 cut(s)	595
NgoMIV	GCCGGC	1 cut(s)	524
NlaIII	CATG	1 cut(s)	223
NlaIV	GGNNCC	3 cut(s)	93, 169, 202
NmuCI	GTSAC	2 cut(s)	274, 289
PagI	TCATGA	1 cut(s)	219
PcsI	WCGNNNNNNNCGW	3 cut(s)	294, 384, 441
PdiI	GCCGGC	1 cut(s)	526
PflFI	GACNNNGTC	1 cut(s)	341
PflMI	CCANNNNNTGG	1 cut(s)	547
PkrI	GCNGC	3 cut(s)	184, 250, 503
PleI	GAGTC	2 cut(s)	317, 464
PmaCI	CACGTG	1 cut(s)	547
PmlI	CACGTG	1 cut(s)	547
PpsI	GAGTC	2 cut(s)	317, 464
Ppu21I	YACGTR	1 cut(s)	547
PpuMI	RGGWCCY	1 cut(s)	167
Psp5II	RGGWCCY	1 cut(s)	167
Psp6I	CCWGG	1 cut(s)	145
PspCI	CACGTG	1 cut(s)	547
PspGI	CCWGG	1 cut(s)	145
PspN4I	GGNNCC	3 cut(s)	93, 169, 202
PspPI	GGNCC	2 cut(s)	167, 358
PspPPI	RGGWCCY	1 cut(s)	167
PsrI	GAACNNNNNNTAC	4 cut(s)	55, 84, 87, 116
PstNI	CAGNNNCTG	2 cut(s)	35, 103
PsyI	GACNNNGTC	1 cut(s)	341
RsaI	GTAC	5 cut(s)	28, 33, 64, 93, 431
RsaNI	GTAC	5 cut(s)	27, 32, 63, 92, 430
SalI	GTCGAC	1 cut(s)	296
SaqAI	TTAA	1 cut(s)	173
SatI	GCNGC	3 cut(s)	183, 249, 502
Sau3AI	GATC	1 cut(s)	595
Sau96I	GGNCC	2 cut(s)	167, 358
SchI	GAGTC	2 cut(s)	317, 464
ScrFI	CCNGG	2 cut(s)	147, 407
SduI	GDGCHC	1 cut(s)	110
SgrAI	CRCCGGYG	1 cut(s)	524
SinI	GGWCC	1 cut(s)	167
Sse9I	AATT	2 cut(s)	353, 449
SsiI	CCGC	9 cut(s)	183, 211, 246, 249, 307, 361, 372, 499, 551
StyD4I	CCNGG	2 cut(s)	145, 405
StyI	CCWWGG	1 cut(s)	160
TaaI	ACNGT	3 cut(s)	31, 91, 295
TaiI	ACGT	3 cut(s)	73, 291, 549
TaqI	TCGA	6 cut(s)	231, 297, 444, 456, 480, 594
TaqII	GACCGA	1 cut(s)	128
TasI	AATT	2 cut(s)	353, 449
TauI	GCSGC	2 cut(s)	185, 251
Tru1I	TTAA	1 cut(s)	173
Tru9I	TTAA	1 cut(s)	173
TscAI	CASTG	1 cut(s)	623
TseFI	GTSAC	2 cut(s)	274, 289
TseI	GCWGC	1 cut(s)	501
Tsp45I	GTSAC	2 cut(s)	274, 289
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	2 cut(s)	14, 376
TspRI	CASTG	1 cut(s)	623
Tth111I	GACNNNGTC	1 cut(s)	341
Van91I	CCANNNNNTGG	1 cut(s)	547
VpaK11BI	GGWCC	1 cut(s)	167
XapI	RAATTY	1 cut(s)	449
XcmI	CCANNNNNNNNNTGG	1 cut(s)	615
XmiI	GTMKAC	1 cut(s)	297
ZraI	GACGTC	1 cut(s)	289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.