Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006986.1

Orthogroup ID

OG0023078

Physical Location & Seq

Genomic Coordinates Forward (+)

64411 .. 66196

Gene Structure 1786 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006986.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

atgcctctatcgcagtatcgctcagagcctcagacgctcactgcctcactgtctgccctcactccattctctaacccagacgagcaagatgatcgaaagattcaaaacccagacgagcaagacgttcgcactcaaagatcggacgatcaccccacgagcaagaccattgcgtcttcgatttgcgatttggttgatgcaatctggaccccagtcttcgaccaccatcaattacctgacctttgccccattctaaacttcagtacctcacgttcagataatatcaaaacggtacctcaggttctgaccccgaccgaagaatgtcccaacaatccactccctcctcctgggctttgctcccttggaggacccttaacggacgccgctcgccgaccaaacggcaccatcaaccgccgtctcatgagcttcctcgacttatgctcctccgccactccctcaaccccctacaaaggcgtcaccacctctgacgtcaccgtcgaccaaacccgcaacctctggttcctcttcttcgtcccttctacgacgtcgtcttcccccgcttctttacccgtcgtcgttttcttccacggcggcggcttcagctttctcagccccgactcctacgcctacgacgccgtctgccgcaaattggcccttgaactccccgccgtcgtagtctccgtcaactaccacctctccccggagcacggctacccctgccagtacgacgacggcctcgacgtcctcaaattcctcgaccaaaaccccgactccctcctcgacctcgctgactgctcccgctgcttcctcgccggagacagcgccggcgcgaacattgcccaccacgtggcggtgcgagcctgccacgagccgtttcgggttgtgaaactaatcgggttgatatcgatccaacctttcttcggcggcgaggaacggaccgagtctgagatccgactctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009056 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0016043 GO:0016049 GO:0016787 GO:0016788 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0044706 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0052689 GO:0060560 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko04075 ko05134 map04075 map05134

Pfam Domains

Protein Families

Abhydrolase_3

Protein Analysis

318

Amino Acids

34.86

Weight (kDa)

4.88

Isoelectric Point (pI)

57.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0023078)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002028.1_g000006 Rmu_sc0003078.1_g000007 Rmu_sc0006986.1_g000021 Rmu_sc0017397.1_g000005

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	169, 491
AatII	GACGTC	3 cut(s)	489, 545, 741
Acc65I	GGTACC	1 cut(s)	289
AccB1I	GGYRCC	2 cut(s)	289, 398
AccB7I	CCANNNNNTGG	1 cut(s)	844
AccBSI	CCGCTC	1 cut(s)	383
AccI	GTMKAC	1 cut(s)	495
AccII	CGCG	1 cut(s)	827
AclWI	GGATC	2 cut(s)	898, 940
AcsI	RAATTY	1 cut(s)	746
AcuI	CTGAAG	2 cut(s)	241, 580
AcvI	CACGTG	1 cut(s)	844
AcyI	GRCGYC	6 cut(s)	378, 471, 486, 542, 630, 738
AdeI	CACNNNGTG	1 cut(s)	844
AfaI	GTAC	3 cut(s)	262, 291, 722
AfiI	CCNNNNNNNGG	8 cut(s)	344, 467, 646, 697, 704, 844, 847, 917
AgsI	TTSAA	2 cut(s)	104, 656
AjnI	CCWGG	1 cut(s)	343
AluBI	AGCT	2 cut(s)	423, 600
AluI	AGCT	2 cut(s)	423, 600
Alw21I	GWGCWC	1 cut(s)	705
Alw26I	GTCTC	3 cut(s)	419, 679, 807
AlwI	GGATC	2 cut(s)	898, 940
AlwNI	CAGNNNCTG	1 cut(s)	301
AoxI	GGCC	2 cut(s)	648, 730
ApeKI	GCWGC	1 cut(s)	798
ApoI	RAATTY	1 cut(s)	746
Asp718I	GGTACC	1 cut(s)	289
AspLEI	GCGC	2 cut(s)	821, 827
AspS9I	GGNCC	4 cut(s)	204, 365, 649, 933
AsuC2I	CCSGG	1 cut(s)	698
AsuHPI	GGTGA	3 cut(s)	140, 466, 481
AvaII	GGWCC	3 cut(s)	204, 365, 933
AxyI	CCTNAGG	1 cut(s)	294
BaeI	ACNNNNGTAYC	2 cut(s)	244, 277
BanI	GGYRCC	2 cut(s)	289, 398
BauI	CACGAG	2 cut(s)	154, 863
BbrPI	CACGTG	1 cut(s)	844
BbsI	GAAGAC	3 cut(s)	165, 205, 540
Bbv12I	GWGCWC	1 cut(s)	705
BbvI	GCAGC	1 cut(s)	785
BccI	CCATC	2 cut(s)	231, 410
BceAI	ACGGC	8 cut(s)	396, 412, 601, 617, 650, 721, 745, 853
BcgI	CGANNNNNNTGC	4 cut(s)	74, 107, 108, 141
BciT130I	CCWGG	1 cut(s)	345
BcnI	CCSGG	1 cut(s)	698
BcoDI	GTCTC	3 cut(s)	419, 679, 807
BfaI	CTAG	1 cut(s)	955
BfoI	RGCGCY	1 cut(s)	822
BisI	GCNGC	6 cut(s)	381, 589, 592, 640, 799, 922
BlsI	GCNGC	6 cut(s)	382, 590, 593, 641, 800, 923
Bme1390I	CCNGG	2 cut(s)	345, 698
Bme18I	GGWCC	3 cut(s)	204, 365, 933
BmgT120I	GGNCC	4 cut(s)	204, 365, 649, 933
BmiI	GGNNCC	5 cut(s)	206, 291, 367, 400, 518
BmrFI	CCNGG	2 cut(s)	345, 698
BmrI	ACTGGG	1 cut(s)	203
BmsI	GCATC	1 cut(s)	184
BmuI	ACTGGG	1 cut(s)	203
BoxI	GACNNNNGTC	1 cut(s)	209
BpiI	GAAGAC	3 cut(s)	165, 205, 540
BpuMI	CCSGG	1 cut(s)	698
Bsa29I	ATCGAT	1 cut(s)	902
BsaAI	YACGTR	1 cut(s)	844
BsaBI	GATNNNNATC	1 cut(s)	902
BsaHI	GRCGYC	6 cut(s)	378, 471, 486, 542, 630, 738
BsaJI	CCNNGG	4 cut(s)	344, 358, 583, 696
BsaXI	ACNNNNNCTCC	6 cut(s)	422, 452, 677, 707, 752, 782
Bsc4I	CCNNNNNNNGG	8 cut(s)	344, 467, 646, 697, 704, 844, 847, 917
Bse118I	RCCGGY	1 cut(s)	821
Bse1I	ACTGG	2 cut(s)	209, 718
Bse21I	CCTNAGG	1 cut(s)	294
Bse3DI	GCAATG	2 cut(s)	165, 831
Bse8I	GATNNNNATC	1 cut(s)	902
BseBI	CCWGG	1 cut(s)	345
BseCI	ATCGAT	1 cut(s)	902
BseDI	CCNNGG	4 cut(s)	344, 358, 583, 696
BseJI	GATNNNNATC	1 cut(s)	902
BseLI	CCNNNNNNNGG	8 cut(s)	344, 467, 646, 697, 704, 844, 847, 917
BseMI	GCAATG	2 cut(s)	165, 831
BseMII	CTCAG	5 cut(s)	36, 44, 308, 619, 933
BseNI	ACTGG	2 cut(s)	209, 718
BseRI	GAGGAG	3 cut(s)	330, 430, 764
BseXI	GCAGC	1 cut(s)	785
Bsh1236I	CGCG	1 cut(s)	827
Bsh1285I	CGRYCG	1 cut(s)	312
BshFI	GGCC	2 cut(s)	650, 732
BshNI	GGYRCC	2 cut(s)	289, 398
BshVI	ATCGAT	1 cut(s)	902
BsiEI	CGRYCG	1 cut(s)	312
BsiHKAI	GWGCWC	1 cut(s)	705
BsiSI	CCGG	3 cut(s)	698, 810, 822
BslFI	GGGAC	2 cut(s)	306, 515
BslI	CCNNNNNNNGG	8 cut(s)	344, 467, 646, 697, 704, 844, 847, 917
BsmAI	GTCTC	3 cut(s)	419, 679, 807
BsmBI	CGTCTC	1 cut(s)	419
BsmFI	GGGAC	2 cut(s)	306, 515
BsnI	GGCC	2 cut(s)	650, 732
Bsp1286I	GDGCHC	1 cut(s)	705
Bsp143I	GATC	5 cut(s)	91, 137, 145, 903, 945
BspANI	GGCC	2 cut(s)	650, 732
BspCNI	CTCAG	5 cut(s)	35, 43, 307, 618, 934
BspDI	ATCGAT	1 cut(s)	902
BspFNI	CGCG	1 cut(s)	827
BspHI	TCATGA	1 cut(s)	417
BspLI	GGNNCC	5 cut(s)	206, 291, 367, 400, 518
BspPI	GGATC	2 cut(s)	898, 940
BspT107I	GGYRCC	2 cut(s)	289, 398
BsrBI	CCGCTC	1 cut(s)	383
BsrDI	GCAATG	2 cut(s)	165, 831
BsrFI	RCCGGY	1 cut(s)	821
BsrI	ACTGG	2 cut(s)	209, 718
BssAI	RCCGGY	1 cut(s)	821
BssECI	CCNNGG	4 cut(s)	344, 358, 583, 696
BssMI	GATC	5 cut(s)	91, 137, 145, 903, 945
BssNI	GRCGYC	6 cut(s)	378, 471, 486, 542, 630, 738
BssSI	CACGAG	2 cut(s)	154, 863
BssT1I	CCWWGG	1 cut(s)	358
Bst2BI	CACGAG	2 cut(s)	154, 863
Bst2UI	CCWGG	1 cut(s)	345
Bst4CI	ACNGT	3 cut(s)	51, 289, 493
Bst6I	CTCTTC	1 cut(s)	527
BstACI	GRCGYC	6 cut(s)	378, 471, 486, 542, 630, 738
BstBAI	YACGTR	1 cut(s)	844
BstC8I	GCNNGC	4 cut(s)	385, 823, 855, 859
BstDEI	CTNAG	5 cut(s)	22, 30, 294, 605, 942
BstDSI	CCRYGG	1 cut(s)	583
BstFNI	CGCG	1 cut(s)	827
BstH2I	RGCGCY	1 cut(s)	822
BstHHI	GCGC	2 cut(s)	821, 827
BstKTI	GATC	5 cut(s)	94, 140, 148, 906, 948
BstMAI	GTCTC	3 cut(s)	419, 679, 807
BstMBI	GATC	5 cut(s)	91, 137, 145, 903, 945
BstMCI	CGRYCG	1 cut(s)	312
BstMWI	GCNNNNNNNGC	9 cut(s)	10, 34, 597, 606, 629, 714, 798, 833, 854
BstNI	CCWGG	1 cut(s)	345
BstPAI	GACNNNNGTC	1 cut(s)	209
BstSCI	CCNGG	2 cut(s)	343, 696
BstUI	CGCG	1 cut(s)	827
BstV1I	GCAGC	1 cut(s)	785
BstV2I	GAAGAC	3 cut(s)	165, 205, 540
BstX2I	RGATCY	1 cut(s)	945
BstYI	RGATCY	1 cut(s)	945
Bsu15I	ATCGAT	1 cut(s)	902
Bsu36I	CCTNAGG	1 cut(s)	294
BsuRI	GGCC	2 cut(s)	650, 732
BsuTUI	ATCGAT	1 cut(s)	902
BtgI	CCRYGG	1 cut(s)	583
BtsI	GCAGTG	1 cut(s)	39
BtsIMutI	CAGTG	2 cut(s)	39, 47
Cac8I	GCNNGC	4 cut(s)	385, 823, 855, 859
CaiI	CAGNNNCTG	1 cut(s)	301
CciI	TCATGA	1 cut(s)	417
CfoI	GCGC	2 cut(s)	821, 827
Cfr10I	RCCGGY	1 cut(s)	821
Cfr13I	GGNCC	4 cut(s)	204, 365, 649, 933
ClaI	ATCGAT	1 cut(s)	902
CpoI	CGGWCCG	1 cut(s)	933
CseI	GACGC	5 cut(s)	43, 159, 386, 460, 638
Csp6I	GTAC	3 cut(s)	261, 290, 721
CspI	CGGWCCG	1 cut(s)	933
CviAII	CATG	1 cut(s)	418
CviQI	GTAC	3 cut(s)	261, 290, 721
DdeI	CTNAG	5 cut(s)	22, 30, 294, 605, 942
DpnI	GATC	5 cut(s)	93, 139, 147, 905, 947
DpnII	GATC	5 cut(s)	91, 137, 145, 903, 945
DraIII	CACNNNGTG	1 cut(s)	844
DrdI	GACNNNNNNGTC	2 cut(s)	169, 491
DseDI	GACNNNNNNGTC	2 cut(s)	169, 491
Eam1104I	CTCTTC	1 cut(s)	527
EarI	CTCTTC	1 cut(s)	527
EciI	GGCGGA	1 cut(s)	433
Eco130I	CCWWGG	1 cut(s)	358
Eco32I	GATATC	1 cut(s)	900
Eco47I	GGWCC	3 cut(s)	204, 365, 933
Eco57I	CTGAAG	2 cut(s)	241, 580
Eco72I	CACGTG	1 cut(s)	844
Eco81I	CCTNAGG	1 cut(s)	294
EcoO109I	RGGNCCY	1 cut(s)	365
EcoRII	CCWGG	1 cut(s)	343
EcoRV	GATATC	1 cut(s)	900
EcoT14I	CCWWGG	1 cut(s)	358
ErhI	CCWWGG	1 cut(s)	358
Esp3I	CGTCTC	1 cut(s)	419
FaeI	CATG	1 cut(s)	421
FaiI	YATR	2 cut(s)	419, 436
FaqI	GGGAC	2 cut(s)	306, 515
FatI	CATG	1 cut(s)	417
FauI	CCCGC	4 cut(s)	512, 562, 670, 803
FblI	GTMKAC	1 cut(s)	495
Fnu4HI	GCNGC	6 cut(s)	381, 589, 592, 640, 799, 922
Fsp4HI	GCNGC	6 cut(s)	381, 589, 592, 640, 799, 922
FspBI	CTAG	1 cut(s)	955
GlaI	GCGC	2 cut(s)	820, 826
GluI	GCNGC	6 cut(s)	381, 589, 592, 640, 799, 922
HaeII	RGCGCY	1 cut(s)	822
HaeIII	GGCC	2 cut(s)	650, 732
HapII	CCGG	3 cut(s)	698, 810, 822
HgaI	GACGC	5 cut(s)	43, 159, 386, 460, 638
HhaI	GCGC	2 cut(s)	821, 827
Hin1I	GRCGYC	6 cut(s)	378, 471, 486, 542, 630, 738
Hin1II	CATG	1 cut(s)	421
Hin6I	GCGC	2 cut(s)	819, 825
HinP1I	GCGC	2 cut(s)	819, 825
HincII	GTYRAC	2 cut(s)	496, 682
HindII	GTYRAC	2 cut(s)	496, 682
HinfI	GANTC	5 cut(s)	100, 614, 767, 938, 951
HpaII	CCGG	3 cut(s)	698, 810, 822
HphI	GGTGA	3 cut(s)	140, 466, 481
Hpy166II	GTNNAC	2 cut(s)	496, 682
Hpy188I	TCNGA	8 cut(s)	25, 33, 142, 274, 303, 484, 943, 950
Hpy188III	TCNNGA	2 cut(s)	202, 418
Hpy8I	GTNNAC	2 cut(s)	496, 682
HpyAV	CCTTC	1 cut(s)	543
HpyCH4III	ACNGT	3 cut(s)	51, 289, 493
HpyCH4IV	ACGT	6 cut(s)	123, 268, 486, 542, 738, 843
HpyCH4V	TGCA	1 cut(s)	197
HpyF10VI	GCNNNNNNNGC	9 cut(s)	10, 34, 597, 606, 629, 714, 798, 833, 854
HpyF3I	CTNAG	5 cut(s)	22, 30, 294, 605, 942
HpySE526I	ACGT	6 cut(s)	123, 268, 486, 542, 738, 843
Hsp92I	GRCGYC	6 cut(s)	378, 471, 486, 542, 630, 738
Hsp92II	CATG	1 cut(s)	421
HspAI	GCGC	2 cut(s)	819, 825
KpnI	GGTACC	1 cut(s)	293
KroI	GCCGGC	1 cut(s)	821
KroNI	GCCGGC	1 cut(s)	823
Kzo9I	GATC	5 cut(s)	91, 137, 145, 903, 945
LmnI	GCTCC	4 cut(s)	359, 443, 700, 797
Lsp1109I	GCAGC	1 cut(s)	785
LweI	GCATC	1 cut(s)	184
MaeI	CTAG	1 cut(s)	955
MaeII	ACGT	6 cut(s)	123, 268, 486, 542, 738, 843
MaeIII	GTNAC	2 cut(s)	472, 487
MalI	GATC	5 cut(s)	93, 139, 147, 905, 947
MbiI	CCGCTC	1 cut(s)	383
MboI	GATC	5 cut(s)	91, 137, 145, 903, 945
MboII	GAAGA	8 cut(s)	165, 205, 326, 514, 517, 540, 571, 907
MflI	RGATCY	1 cut(s)	945
MhlI	GDGCHC	1 cut(s)	705
MluCI	AATT	3 cut(s)	227, 644, 746
MlyI	GAGTC	4 cut(s)	608, 761, 945, 947
MmeI	TCCRAC	1 cut(s)	931
MreI	CGCCGGCG	1 cut(s)	821
MroNI	GCCGGC	1 cut(s)	821
MseI	TTAA	1 cut(s)	371
MspA1I	CMGCKG	1 cut(s)	798
MspI	CCGG	3 cut(s)	698, 810, 822
MspR9I	CCNGG	2 cut(s)	345, 698
MvaI	CCWGG	1 cut(s)	345
MvnI	CGCG	1 cut(s)	827
MwoI	GCNNNNNNNGC	9 cut(s)	10, 34, 597, 606, 629, 714, 798, 833, 854
NaeI	GCCGGC	1 cut(s)	823
NciI	CCSGG	1 cut(s)	698
NdeII	GATC	5 cut(s)	91, 137, 145, 903, 945
NgoMIV	GCCGGC	1 cut(s)	821
NlaIII	CATG	1 cut(s)	421
NlaIV	GGNNCC	5 cut(s)	206, 291, 367, 400, 518
NmuCI	GTSAC	2 cut(s)	472, 487
PagI	TCATGA	1 cut(s)	417
PcsI	WCGNNNNNNNCGW	5 cut(s)	120, 492, 675, 732, 735
PdiI	GCCGGC	1 cut(s)	823
PfeI	GAWTC	1 cut(s)	100
PflFI	GACNNNGTC	3 cut(s)	544, 632, 937
PflMI	CCANNNNNTGG	1 cut(s)	844
PkrI	GCNGC	6 cut(s)	382, 590, 593, 641, 800, 923
PleI	GAGTC	4 cut(s)	608, 761, 945, 946
PmaCI	CACGTG	1 cut(s)	844
PmlI	CACGTG	1 cut(s)	844
PpsI	GAGTC	4 cut(s)	608, 761, 945, 946
Ppu21I	YACGTR	1 cut(s)	844
PpuMI	RGGWCCY	1 cut(s)	365
PshAI	GACNNNNGTC	1 cut(s)	209
Psp5II	RGGWCCY	1 cut(s)	365
Psp6I	CCWGG	1 cut(s)	343
PspCI	CACGTG	1 cut(s)	844
PspGI	CCWGG	1 cut(s)	343
PspN4I	GGNNCC	5 cut(s)	206, 291, 367, 400, 518
PspPI	GGNCC	4 cut(s)	204, 365, 649, 933
PspPPI	RGGWCCY	1 cut(s)	365
PsrI	GAACNNNNNNTAC	4 cut(s)	253, 282, 285, 314
PstNI	CAGNNNCTG	1 cut(s)	301
PsuI	RGATCY	1 cut(s)	945
PsyI	GACNNNGTC	3 cut(s)	544, 632, 937
RsaI	GTAC	3 cut(s)	262, 291, 722
RsaNI	GTAC	3 cut(s)	261, 290, 721
Rsr2I	CGGWCCG	1 cut(s)	933
RsrII	CGGWCCG	1 cut(s)	933
SalI	GTCGAC	1 cut(s)	494
SaqAI	TTAA	1 cut(s)	371
SatI	GCNGC	6 cut(s)	381, 589, 592, 640, 799, 922
Sau3AI	GATC	5 cut(s)	91, 137, 145, 903, 945
Sau96I	GGNCC	4 cut(s)	204, 365, 649, 933
SchI	GAGTC	4 cut(s)	608, 761, 945, 947
ScrFI	CCNGG	2 cut(s)	345, 698
SduI	GDGCHC	1 cut(s)	705
SfaNI	GCATC	1 cut(s)	184
SgrAI	CRCCGGYG	1 cut(s)	821
SinI	GGWCC	3 cut(s)	204, 365, 933
Sse9I	AATT	3 cut(s)	227, 644, 746
SspMI	CTAG	1 cut(s)	955
StyD4I	CCNGG	2 cut(s)	343, 696
StyI	CCWWGG	1 cut(s)	358
TaaI	ACNGT	3 cut(s)	51, 289, 493
TaiI	ACGT	6 cut(s)	126, 271, 489, 545, 741, 846
TaqI	TCGA	9 cut(s)	94, 176, 216, 429, 495, 735, 753, 777, 902
TaqII	GACCGA	2 cut(s)	326, 950
TasI	AATT	3 cut(s)	227, 644, 746
TauI	GCSGC	5 cut(s)	383, 591, 594, 642, 924
TfiI	GAWTC	1 cut(s)	100
Tru1I	TTAA	1 cut(s)	371
Tru9I	TTAA	1 cut(s)	371
TscAI	CASTG	2 cut(s)	46, 54
TseFI	GTSAC	2 cut(s)	472, 487
TseI	GCWGC	1 cut(s)	798
Tsp45I	GTSAC	2 cut(s)	472, 487
TspGWI	ACGGA	3 cut(s)	389, 667, 946
TspRI	CASTG	2 cut(s)	46, 54
Tth111I	GACNNNGTC	3 cut(s)	544, 632, 937
Van91I	CCANNNNNTGG	1 cut(s)	844
VpaK11BI	GGWCC	3 cut(s)	204, 365, 933
XapI	RAATTY	1 cut(s)	746
XmiI	GTMKAC	1 cut(s)	495
XspI	CTAG	1 cut(s)	955
ZraI	GACGTC	3 cut(s)	487, 543, 739

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.