Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002211.1

Orthogroup ID

OG0018155

Physical Location & Seq

Genomic Coordinates Forward (+)

43214 .. 46404

Gene Structure 3191 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002211.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ctgagcttctggatcttgttgtggcactgcgaggaggtcttgaaaggtgagactagtgggaattgggcggtaagggtggtggcgacttcatcccagtcggtggcggccgagagaagaccacttgtccttgaagatagagatgagggcttcgacctagttgtcggtccagcatggcgacggggggttggggaggatattggggtgtgggataaggagagaagggaggtcgtagaacttactctaagtgaaagagatgtgttgggtttgagagaaggtgggatcggaaagaccacacttactcctcctgaagatgtggatgggtccaaaggaagtcaaaatggaacaataagtgaagagagtccagctaatccagttgatgggcctgacacttgttcatttactgcatttttctactcacttttatcatcatcagagtcgggagataagagtaaagttcagatgtcgagacaacaagtatcaagtcctgctgaaggaacaaatgacacatttcttttcacaaatacacctggtcatcctgttatatatggccctacaggtgccaaccgctatatcacattgtgcgctactgacgttttagctattggtggggggtggtcattgcactctatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TLD

Protein Analysis

210

Amino Acids

22.69

Weight (kDa)

4.66

Isoelectric Point (pI)

45.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018155)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0113791 RchiOBHm_Chr2g0113981 RchiOBHm_Chr2g0114321
rosa_multiflora	Rmu_sc0000929.1_g000032 Rmu_sc0002211.1_g000015
rosa_rugosa	Rorug02G0189000
rosa_samantha	Rh1BG230100 Rh2CG248500 Rh2DG251200 Rh2DG251300 Rh2DG252400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	158
AccB1I	GGYRCC	1 cut(s)	557
AccB7I	CCANNNNNTGG	2 cut(s)	100, 377
AciI	CCGC	3 cut(s)	68, 104, 565
AclWI	GGATC	2 cut(s)	20, 287
AcoI	YGGCCR	1 cut(s)	105
AcuI	CTGAAG	2 cut(s)	327, 510
AdeI	CACNNNGTG	1 cut(s)	579
AfiI	CCNNNNNNNGG	3 cut(s)	100, 377, 491
AgsI	TTSAA	2 cut(s)	43, 131
AhdI	GACNNNNNGTC	1 cut(s)	122
AhlI	ACTAGT	1 cut(s)	53
AjnI	CCWGG	1 cut(s)	526
AluBI	AGCT	3 cut(s)	6, 365, 599
AluI	AGCT	3 cut(s)	6, 365, 599
Alw26I	GTCTC	2 cut(s)	44, 460
AlwI	GGATC	2 cut(s)	20, 287
AoxI	GGCC	3 cut(s)	105, 380, 547
AspLEI	GCGC	1 cut(s)	584
AspS9I	GGNCC	4 cut(s)	164, 321, 380, 548
AsuHPI	GGTGA	1 cut(s)	59
AvaII	GGWCC	2 cut(s)	164, 321
BanI	GGYRCC	1 cut(s)	557
BbsI	GAAGAC	1 cut(s)	121
BccI	CCATC	2 cut(s)	311, 371
BciT130I	CCWGG	1 cut(s)	528
BcoDI	GTCTC	2 cut(s)	44, 460
BcuI	ACTAGT	1 cut(s)	53
BfaI	CTAG	2 cut(s)	54, 155
BfmI	CTRYAG	1 cut(s)	552
BisI	GCNGC	1 cut(s)	105
BlsI	GCNGC	1 cut(s)	106
Bme1390I	CCNGG	1 cut(s)	528
Bme18I	GGWCC	2 cut(s)	164, 321
BmeRI	GACNNNNNGTC	1 cut(s)	122
BmgT120I	GGNCC	4 cut(s)	164, 321, 380, 548
BmiI	GGNNCC	2 cut(s)	322, 559
BmrFI	CCNGG	1 cut(s)	528
BmrI	ACTGGG	1 cut(s)	88
BmuI	ACTGGG	1 cut(s)	88
BpiI	GAAGAC	1 cut(s)	121
BsaXI	ACNNNNNCTCC	2 cut(s)	283, 313
Bsc4I	CCNNNNNNNGG	3 cut(s)	100, 377, 491
Bse1I	ACTGG	2 cut(s)	94, 371
Bse3DI	GCAATG	1 cut(s)	617
BseBI	CCWGG	1 cut(s)	528
BseGI	GGATG	3 cut(s)	89, 322, 532
BseLI	CCNNNNNNNGG	3 cut(s)	100, 377, 491
BseMI	GCAATG	1 cut(s)	617
BseNI	ACTGG	2 cut(s)	94, 371
BseRI	GAGGAG	2 cut(s)	47, 291
BseX3I	CGGCCG	1 cut(s)	105
Bsh1285I	CGRYCG	1 cut(s)	108
BshFI	GGCC	3 cut(s)	107, 382, 549
BshNI	GGYRCC	1 cut(s)	557
BsiEI	CGRYCG	1 cut(s)	108
BslI	CCNNNNNNNGG	3 cut(s)	100, 377, 491
BsmAI	GTCTC	2 cut(s)	44, 460
BsnI	GGCC	3 cut(s)	107, 382, 549
Bsp143I	GATC	2 cut(s)	12, 279
BspACI	CCGC	3 cut(s)	68, 104, 565
BspANI	GGCC	3 cut(s)	107, 382, 549
BspLI	GGNNCC	2 cut(s)	322, 559
BspPI	GGATC	2 cut(s)	20, 287
BspT107I	GGYRCC	1 cut(s)	557
BsrDI	GCAATG	1 cut(s)	617
BsrI	ACTGG	2 cut(s)	94, 371
BssMI	GATC	2 cut(s)	12, 279
Bst2UI	CCWGG	1 cut(s)	528
Bst6I	CTCTTC	1 cut(s)	348
BstDEI	CTNAG	2 cut(s)	2, 242
BstENI	CCTNNNNNAGG	1 cut(s)	489
BstF5I	GGATG	3 cut(s)	89, 322, 532
BstHHI	GCGC	1 cut(s)	584
BstKTI	GATC	2 cut(s)	15, 282
BstMAI	GTCTC	2 cut(s)	44, 460
BstMBI	GATC	2 cut(s)	12, 279
BstMCI	CGRYCG	1 cut(s)	108
BstNI	CCWGG	1 cut(s)	528
BstSCI	CCNGG	1 cut(s)	526
BstSFI	CTRYAG	1 cut(s)	552
BstV2I	GAAGAC	1 cut(s)	121
BstX2I	RGATCY	1 cut(s)	12
BstYI	RGATCY	1 cut(s)	12
BstZI	CGGCCG	1 cut(s)	105
BsuRI	GGCC	3 cut(s)	107, 382, 549
BtsCI	GGATG	3 cut(s)	89, 322, 532
BtsI	GCAGTG	1 cut(s)	25
BtsIMutI	CAGTG	1 cut(s)	25
CfoI	GCGC	1 cut(s)	584
Cfr13I	GGNCC	4 cut(s)	164, 321, 380, 548
CsiI	ACCWGGT	1 cut(s)	526
CviAII	CATG	1 cut(s)	171
CviJI	RGCY	7 cut(s)	6, 107, 147, 365, 382, 549, 599
CviKI_1	RGCY	7 cut(s)	6, 107, 147, 365, 382, 549, 599
DdeI	CTNAG	2 cut(s)	2, 242
DpnI	GATC	2 cut(s)	14, 281
DpnII	GATC	2 cut(s)	12, 279
DraIII	CACNNNGTG	1 cut(s)	579
DrdI	GACNNNNNNGTC	1 cut(s)	158
DriI	GACNNNNNGTC	1 cut(s)	122
DseDI	GACNNNNNNGTC	1 cut(s)	158
EaeI	YGGCCR	1 cut(s)	105
EagI	CGGCCG	1 cut(s)	105
Eam1104I	CTCTTC	1 cut(s)	348
Eam1105I	GACNNNNNGTC	1 cut(s)	122
EarI	CTCTTC	1 cut(s)	348
EclXI	CGGCCG	1 cut(s)	105
Eco47I	GGWCC	2 cut(s)	164, 321
Eco52I	CGGCCG	1 cut(s)	105
Eco57I	CTGAAG	2 cut(s)	327, 510
EcoNI	CCTNNNNNAGG	1 cut(s)	489
EcoRII	CCWGG	1 cut(s)	526
FaeI	CATG	1 cut(s)	174
FaiI	YATR	5 cut(s)	172, 542, 544, 546, 570
FatI	CATG	1 cut(s)	170
Fnu4HI	GCNGC	1 cut(s)	105
FokI	GGATG	3 cut(s)	76, 329, 519
Fsp4HI	GCNGC	1 cut(s)	105
FspBI	CTAG	2 cut(s)	54, 155
GlaI	GCGC	1 cut(s)	583
GluI	GCNGC	1 cut(s)	105
HaeIII	GGCC	3 cut(s)	107, 382, 549
HhaI	GCGC	1 cut(s)	584
Hin1II	CATG	1 cut(s)	174
Hin6I	GCGC	1 cut(s)	582
HinP1I	GCGC	1 cut(s)	582
HinfI	GANTC	2 cut(s)	358, 434
HphI	GGTGA	1 cut(s)	59
Hpy188I	TCNGA	3 cut(s)	284, 433, 459
Hpy188III	TCNNGA	5 cut(s)	10, 40, 305, 438, 465
Hpy99I	CGWCG	1 cut(s)	180
HpyAV	CCTTC	3 cut(s)	213, 266, 485
HpyCH4IV	ACGT	1 cut(s)	591
HpyCH4V	TGCA	2 cut(s)	404, 622
HpyF3I	CTNAG	2 cut(s)	2, 242
HpySE526I	ACGT	1 cut(s)	591
Hsp92II	CATG	1 cut(s)	174
HspAI	GCGC	1 cut(s)	582
Kzo9I	GATC	2 cut(s)	12, 279
MabI	ACCWGGT	1 cut(s)	526
MaeI	CTAG	2 cut(s)	54, 155
MaeII	ACGT	1 cut(s)	591
MalI	GATC	2 cut(s)	14, 281
MboI	GATC	2 cut(s)	12, 279
MboII	GAAGA	4 cut(s)	126, 143, 320, 365
MflI	RGATCY	1 cut(s)	12
MluCI	AATT	1 cut(s)	61
MlyI	GAGTC	2 cut(s)	367, 443
MnlI	CCTC	6 cut(s)	25, 28, 136, 184, 217, 312
MspR9I	CCNGG	1 cut(s)	528
MvaI	CCWGG	1 cut(s)	528
NdeII	GATC	2 cut(s)	12, 279
NlaIII	CATG	1 cut(s)	174
NlaIV	GGNNCC	2 cut(s)	322, 559
NmeAIII	GCCGAG	1 cut(s)	133
PflMI	CCANNNNNTGG	2 cut(s)	100, 377
PkrI	GCNGC	1 cut(s)	106
PleI	GAGTC	2 cut(s)	366, 442
PpsI	GAGTC	2 cut(s)	366, 442
Psp6I	CCWGG	1 cut(s)	526
PspGI	CCWGG	1 cut(s)	526
PspN4I	GGNNCC	2 cut(s)	322, 559
PspPI	GGNCC	4 cut(s)	164, 321, 380, 548
PsuI	RGATCY	1 cut(s)	12
SatI	GCNGC	1 cut(s)	105
Sau3AI	GATC	2 cut(s)	12, 279
Sau96I	GGNCC	4 cut(s)	164, 321, 380, 548
SchI	GAGTC	2 cut(s)	367, 443
ScrFI	CCNGG	1 cut(s)	528
SexAI	ACCWGGT	1 cut(s)	526
SfcI	CTRYAG	1 cut(s)	552
SinI	GGWCC	2 cut(s)	164, 321
SpeI	ACTAGT	1 cut(s)	53
Sse9I	AATT	1 cut(s)	61
SsiI	CCGC	3 cut(s)	68, 104, 565
SspMI	CTAG	2 cut(s)	54, 155
StyD4I	CCNGG	1 cut(s)	526
TaiI	ACGT	1 cut(s)	594
TaqI	TCGA	2 cut(s)	150, 464
TaqII	GACCGA	1 cut(s)	152
TasI	AATT	1 cut(s)	61
TauI	GCSGC	1 cut(s)	107
TscAI	CASTG	1 cut(s)	32
TspDTI	ATGAA	2 cut(s)	78, 384
TspRI	CASTG	1 cut(s)	32
Van91I	CCANNNNNTGG	2 cut(s)	100, 377
VpaK11BI	GGWCC	2 cut(s)	164, 321
XagI	CCTNNNNNAGG	1 cut(s)	489
XspI	CTAG	2 cut(s)	54, 155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.