Oxidation resistance protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr2g0113791 RchiOBHm_Chr2g0113981 RchiOBHm_Chr2g0114321 |
| rosa_multiflora | Rmu_sc0000929.1_g000032 Rmu_sc0002211.1_g000015 |
| rosa_rugosa | Rorug02G0189000 |
| rosa_samantha | Rh1BG230100 Rh2CG248500 Rh2DG251200 Rh2DG251300 Rh2DG252400 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 191 |
| AccBSI | CCGCTC | 1 cut(s) | 432 |
| AciI | CCGC | 1 cut(s) | 432 |
| AdeI | CACNNNGTG | 1 cut(s) | 43 |
| AfaI | GTAC | 1 cut(s) | 394 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 191 |
| AjiI | CACGTC | 1 cut(s) | 450 |
| AjnI | CCWGG | 1 cut(s) | 395 |
| AluBI | AGCT | 3 cut(s) | 179, 353, 388 |
| AluI | AGCT | 3 cut(s) | 179, 353, 388 |
| AoxI | GGCC | 2 cut(s) | 33, 194 |
| ApeKI | GCWGC | 1 cut(s) | 400 |
| AspS9I | GGNCC | 3 cut(s) | 34, 135, 194 |
| AvaII | GGWCC | 1 cut(s) | 135 |
| AxyI | CCTNAGG | 1 cut(s) | 117 |
| BbsI | GAAGAC | 1 cut(s) | 11 |
| BbvI | GCAGC | 1 cut(s) | 387 |
| BccI | CCATC | 2 cut(s) | 125, 185 |
| BciT130I | CCWGG | 1 cut(s) | 397 |
| BfmI | CTRYAG | 1 cut(s) | 324 |
| BisI | GCNGC | 1 cut(s) | 401 |
| BlsI | GCNGC | 1 cut(s) | 402 |
| Bme1390I | CCNGG | 1 cut(s) | 397 |
| Bme18I | GGWCC | 1 cut(s) | 135 |
| BmgBI | CACGTC | 1 cut(s) | 450 |
| BmgT120I | GGNCC | 3 cut(s) | 34, 135, 194 |
| BmiI | GGNNCC | 1 cut(s) | 136 |
| BmrFI | CCNGG | 1 cut(s) | 397 |
| BmsI | GCATC | 1 cut(s) | 426 |
| BpiI | GAAGAC | 1 cut(s) | 11 |
| BsaJI | CCNNGG | 1 cut(s) | 362 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 74, 104 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 191 |
| Bse1I | ACTGG | 2 cut(s) | 64, 185 |
| Bse21I | CCTNAGG | 1 cut(s) | 117 |
| BseBI | CCWGG | 1 cut(s) | 397 |
| BseDI | CCNNGG | 1 cut(s) | 362 |
| BseGI | GGATG | 3 cut(s) | 130, 136, 280 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 191 |
| BseMII | CTCAG | 1 cut(s) | 131 |
| BseNI | ACTGG | 2 cut(s) | 64, 185 |
| BseRI | GAGGAG | 3 cut(s) | 99, 102, 105 |
| BseXI | GCAGC | 1 cut(s) | 387 |
| BshFI | GGCC | 2 cut(s) | 35, 196 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 191 |
| BsnI | GGCC | 2 cut(s) | 35, 196 |
| BspACI | CCGC | 1 cut(s) | 432 |
| BspANI | GGCC | 2 cut(s) | 35, 196 |
| BspCNI | CTCAG | 1 cut(s) | 130 |
| BspLI | GGNNCC | 1 cut(s) | 136 |
| BspMAI | CTGCAG | 1 cut(s) | 328 |
| BsrBI | CCGCTC | 1 cut(s) | 432 |
| BsrI | ACTGG | 2 cut(s) | 64, 185 |
| BssECI | CCNNGG | 1 cut(s) | 362 |
| BssT1I | CCWWGG | 1 cut(s) | 362 |
| Bst2UI | CCWGG | 1 cut(s) | 397 |
| Bst4CI | ACNGT | 2 cut(s) | 234, 340 |
| Bst6I | CTCTTC | 2 cut(s) | 162, 340 |
| BstDEI | CTNAG | 2 cut(s) | 117, 379 |
| BstEII | GGTNACC | 1 cut(s) | 439 |
| BstF5I | GGATG | 3 cut(s) | 130, 136, 280 |
| BstNI | CCWGG | 1 cut(s) | 397 |
| BstPI | GGTNACC | 1 cut(s) | 439 |
| BstSCI | CCNGG | 1 cut(s) | 395 |
| BstSFI | CTRYAG | 1 cut(s) | 324 |
| BstV1I | GCAGC | 1 cut(s) | 387 |
| BstV2I | GAAGAC | 1 cut(s) | 11 |
| Bsu36I | CCTNAGG | 1 cut(s) | 117 |
| BsuRI | GGCC | 2 cut(s) | 35, 196 |
| BtrI | CACGTC | 1 cut(s) | 450 |
| BtsCI | GGATG | 3 cut(s) | 130, 136, 280 |
| BtsI | GCAGTG | 1 cut(s) | 333 |
| BtsIMutI | CAGTG | 3 cut(s) | 230, 333, 345 |
| Cfr13I | GGNCC | 3 cut(s) | 34, 135, 194 |
| Csp6I | GTAC | 1 cut(s) | 393 |
| CviJI | RGCY | 6 cut(s) | 35, 179, 196, 353, 388, 400 |
| CviKI_1 | RGCY | 6 cut(s) | 35, 179, 196, 353, 388, 400 |
| CviQI | GTAC | 1 cut(s) | 393 |
| DdeI | CTNAG | 2 cut(s) | 117, 379 |
| DraIII | CACNNNGTG | 1 cut(s) | 43 |
| Eam1104I | CTCTTC | 2 cut(s) | 162, 340 |
| EarI | CTCTTC | 2 cut(s) | 162, 340 |
| Eco130I | CCWWGG | 1 cut(s) | 362 |
| Eco32I | GATATC | 1 cut(s) | 52 |
| Eco47I | GGWCC | 1 cut(s) | 135 |
| Eco81I | CCTNAGG | 1 cut(s) | 117 |
| Eco91I | GGTNACC | 1 cut(s) | 439 |
| EcoO65I | GGTNACC | 1 cut(s) | 439 |
| EcoRII | CCWGG | 1 cut(s) | 395 |
| EcoRV | GATATC | 1 cut(s) | 52 |
| EcoT14I | CCWWGG | 1 cut(s) | 362 |
| ErhI | CCWWGG | 1 cut(s) | 362 |
| FaiI | YATR | 1 cut(s) | 391 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 337, 369 |
| Fnu4HI | GCNGC | 1 cut(s) | 401 |
| FokI | GGATG | 3 cut(s) | 137, 143, 287 |
| Fsp4HI | GCNGC | 1 cut(s) | 401 |
| GluI | GCNGC | 1 cut(s) | 401 |
| HaeIII | GGCC | 2 cut(s) | 35, 196 |
| HindIII | AAGCTT | 1 cut(s) | 351 |
| HinfI | GANTC | 5 cut(s) | 16, 172, 248, 320, 423 |
| Hpy188I | TCNGA | 5 cut(s) | 82, 247, 274, 319, 422 |
| Hpy188III | TCNNGA | 3 cut(s) | 119, 252, 427 |
| HpyAV | CCTTC | 3 cut(s) | 6, 114, 429 |
| HpyCH4III | ACNGT | 2 cut(s) | 234, 340 |
| HpyCH4IV | ACGT | 1 cut(s) | 449 |
| HpyCH4V | TGCA | 3 cut(s) | 218, 326, 403 |
| HpyF3I | CTNAG | 2 cut(s) | 117, 379 |
| HpySE526I | ACGT | 1 cut(s) | 449 |
| LpnPI | CCDG | 8 cut(s) | 45, 104, 189, 198, 210, 266, 382, 409 |
| Lsp1109I | GCAGC | 1 cut(s) | 387 |
| LweI | GCATC | 1 cut(s) | 426 |
| MaeII | ACGT | 1 cut(s) | 449 |
| MaeIII | GTNAC | 2 cut(s) | 43, 439 |
| MbiI | CCGCTC | 1 cut(s) | 432 |
| MboII | GAAGA | 5 cut(s) | 11, 179, 198, 343, 357 |
| MlyI | GAGTC | 4 cut(s) | 25, 181, 257, 432 |
| MnlI | CCTC | 6 cut(s) | 100, 109, 115, 120, 123, 126 |
| MspR9I | CCNGG | 1 cut(s) | 397 |
| MvaI | CCWGG | 1 cut(s) | 397 |
| NlaIV | GGNNCC | 1 cut(s) | 136 |
| NmuCI | GTSAC | 1 cut(s) | 43 |
| PfeI | GAWTC | 1 cut(s) | 320 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 191 |
| PkrI | GCNGC | 1 cut(s) | 402 |
| PleI | GAGTC | 4 cut(s) | 24, 180, 256, 431 |
| PpsI | GAGTC | 4 cut(s) | 24, 180, 256, 431 |
| Psp6I | CCWGG | 1 cut(s) | 395 |
| PspEI | GGTNACC | 1 cut(s) | 439 |
| PspGI | CCWGG | 1 cut(s) | 395 |
| PspN4I | GGNNCC | 1 cut(s) | 136 |
| PspPI | GGNCC | 3 cut(s) | 34, 135, 194 |
| PstI | CTGCAG | 1 cut(s) | 328 |
| RsaI | GTAC | 1 cut(s) | 394 |
| RsaNI | GTAC | 1 cut(s) | 393 |
| SatI | GCNGC | 1 cut(s) | 401 |
| Sau96I | GGNCC | 3 cut(s) | 34, 135, 194 |
| SchI | GAGTC | 4 cut(s) | 25, 181, 257, 432 |
| ScrFI | CCNGG | 1 cut(s) | 397 |
| SetI | ASST | 6 cut(s) | 181, 285, 355, 390, 446, 452 |
| SfaNI | GCATC | 1 cut(s) | 426 |
| SfcI | CTRYAG | 1 cut(s) | 324 |
| SinI | GGWCC | 1 cut(s) | 135 |
| SsiI | CCGC | 1 cut(s) | 432 |
| StyD4I | CCNGG | 1 cut(s) | 395 |
| StyI | CCWWGG | 1 cut(s) | 362 |
| TaaI | ACNGT | 2 cut(s) | 234, 340 |
| TaiI | ACGT | 1 cut(s) | 452 |
| TfiI | GAWTC | 1 cut(s) | 320 |
| TscAI | CASTG | 3 cut(s) | 237, 333, 345 |
| TseFI | GTSAC | 1 cut(s) | 43 |
| TseI | GCWGC | 1 cut(s) | 400 |
| Tsp45I | GTSAC | 1 cut(s) | 43 |
| TspDTI | ATGAA | 2 cut(s) | 198, 291 |
| TspRI | CASTG | 3 cut(s) | 237, 333, 345 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 191 |
| VpaK11BI | GGWCC | 1 cut(s) | 135 |