Rmu_sc0002226.1_g000033

nucleobase-ascorbate transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002226.1
OG0019950
Physical Location & Seq
Forward (+)
155420 .. 159463
4044 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 705 bp
atgaggactttacagggtgcactcatgatggcatccctttttcagctggtgattgcctcacttggggttgctcagttcgggaggaggctcagccctttgactgttagtccattggtgatcttatcgggatttgggttcttctcatcaggcttcccccagtgggggactcctatcgttgattttagagatatctttccgatgttggctgctgcactagtgtccactattgagtgttctagtggatttattgcatcatcccggttatctggactgacccatattccaccttttgtcctgaggcgaggtgcgatttttcagagcattggcagtttctctggtagtatgtttggcacagtcactggcatcacgacctcaattgagagtgtaggtcttgtcggactcactcgtgttgctaccagagatgtgactcctgtgacagcactagtgatgatattctgcagtttagtgagtgatatagtcttggtcttcggcacatcggcaccgactattggggtcttcactgcgctgctactagacctagtcatgcctcgagaagagtcagatgatcttggattagacagtggcatgcagtggtttatctatttctgggacccaaatggccagaccgcgacctactattcagtacggttctatcttaggcatttatttgagagggtttctgtatcttttaggggactattctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Xan_ur_permease

Protein Analysis

234

Amino Acids

25.41

Weight (kDa)

6.72

Isoelectric Point (pI)

40.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Xan_ur_permease PF00860 53 - 160 7.8e-13 Permease family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019950)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0291781
rosa_multiflora Rmu_sc0002226.1_g000033
rosa_roxburghii Rroxscaffold_7G00175740
rosa_samantha Rh6BG047900 Rh6CG046600 Rh6CG347600
rosa_wichuraiana Rw6G028990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 499
AccII CGCG 1 cut(s) 629
AciI CCGC 1 cut(s) 627
AcoI YGGCCR 1 cut(s) 619
AfaI GTAC 1 cut(s) 645
AfiI CCNNNNNNNGG 5 cut(s) 63, 160, 161, 162, 509
AhdI GACNNNNNGTC 1 cut(s) 105
AhlI ACTAGT 2 cut(s) 214, 442
AluBI AGCT 1 cut(s) 46
AluI AGCT 1 cut(s) 46
Alw21I GWGCWC 1 cut(s) 22
Alw44I GTGCAC 1 cut(s) 18
AlwNI CAGNNNCTG 1 cut(s) 359
Ama87I CYCGRG 1 cut(s) 549
AoxI GGCC 1 cut(s) 619
ApaLI GTGCAC 1 cut(s) 18
ApeKI GCWGC 3 cut(s) 206, 209, 526
AspLEI GCGC 1 cut(s) 526
AspS9I GGNCC 1 cut(s) 610
AsuC2I CCSGG 1 cut(s) 259
AsuHPI GGTGA 2 cut(s) 61, 127
AvaI CYCGRG 1 cut(s) 549
AvaII GGWCC 1 cut(s) 610
AxyI CCTNAGG 1 cut(s) 296
BaeGI GKGCMC 1 cut(s) 22
BalI TGGCCA 1 cut(s) 621
BanI GGYRCC 1 cut(s) 499
BauI CACGAG 1 cut(s) 405
BbsI GAAGAC 2 cut(s) 478, 508
Bbv12I GWGCWC 1 cut(s) 22
BbvI GCAGC 3 cut(s) 193, 196, 513
BccI CCATC 1 cut(s) 22
BcnI CCSGG 1 cut(s) 259
BcuI ACTAGT 2 cut(s) 214, 442
BfaI CTAG 6 cut(s) 215, 237, 443, 533, 539, 703
BfmI CTRYAG 1 cut(s) 457
BisI GCNGC 3 cut(s) 207, 210, 527
BlpI GCTNAGC 1 cut(s) 89
BlsI GCNGC 3 cut(s) 208, 211, 528
Bme1390I CCNGG 1 cut(s) 259
Bme18I GGWCC 1 cut(s) 610
BmeRI GACNNNNNGTC 1 cut(s) 105
BmeT110I CYCGRG 1 cut(s) 549
BmgT120I GGNCC 1 cut(s) 610
BmiI GGNNCC 3 cut(s) 501, 611, 612
BmrFI CCNGG 1 cut(s) 259
BmrI ACTGGG 1 cut(s) 151
BmsI GCATC 3 cut(s) 41, 260, 372
BmuI ACTGGG 1 cut(s) 151
BpiI GAAGAC 2 cut(s) 478, 508
Bpu1102I GCTNAGC 1 cut(s) 89
BpuMI CCSGG 1 cut(s) 259
Bsc4I CCNNNNNNNGG 5 cut(s) 63, 160, 161, 162, 509
Bse1I ACTGG 2 cut(s) 157, 364
Bse21I CCTNAGG 1 cut(s) 296
BseGI GGATG 2 cut(s) 32, 254
BseLI CCNNNNNNNGG 5 cut(s) 63, 160, 161, 162, 509
BseMII CTCAG 3 cut(s) 86, 103, 287
BseNI ACTGG 2 cut(s) 157, 364
BseRI GAGGAG 1 cut(s) 97
BseSI GKGCMC 1 cut(s) 22
BseXI GCAGC 3 cut(s) 193, 196, 513
BsgI GTGCAG 1 cut(s) 195
Bsh1236I CGCG 1 cut(s) 629
BshFI GGCC 1 cut(s) 621
BshNI GGYRCC 1 cut(s) 499
BsiHKAI GWGCWC 1 cut(s) 22
BsiHKCI CYCGRG 1 cut(s) 549
BsiSI CCGG 1 cut(s) 259
BslFI GGGAC 2 cut(s) 178, 623
BslI CCNNNNNNNGG 5 cut(s) 63, 160, 161, 162, 509
BsmFI GGGAC 2 cut(s) 178, 623
BsnI GGCC 1 cut(s) 621
BsoBI CYCGRG 1 cut(s) 549
Bsp1286I GDGCHC 1 cut(s) 22
Bsp143I GATC 2 cut(s) 117, 565
Bsp1720I GCTNAGC 1 cut(s) 89
BspACI CCGC 1 cut(s) 627
BspANI GGCC 1 cut(s) 621
BspCNI CTCAG 3 cut(s) 85, 102, 288
BspFNI CGCG 1 cut(s) 629
BspHI TCATGA 1 cut(s) 24
BspLI GGNNCC 3 cut(s) 501, 611, 612
BspMAI CTGCAG 1 cut(s) 461
BspT107I GGYRCC 1 cut(s) 499
BsrI ACTGG 2 cut(s) 157, 364
BssMI GATC 2 cut(s) 117, 565
BssSI CACGAG 1 cut(s) 405
Bst2BI CACGAG 1 cut(s) 405
Bst4CI ACNGT 4 cut(s) 103, 355, 581, 648
Bst6I CTCTTC 1 cut(s) 549
BstC8I GCNNGC 1 cut(s) 587
BstDEI CTNAG 4 cut(s) 72, 89, 296, 656
BstF5I GGATG 2 cut(s) 32, 254
BstFNI CGCG 1 cut(s) 629
BstHHI GCGC 1 cut(s) 526
BstKTI GATC 2 cut(s) 120, 568
BstMBI GATC 2 cut(s) 117, 565
BstNSI RCATGY 1 cut(s) 589
BstSCI CCNGG 1 cut(s) 257
BstSFI CTRYAG 1 cut(s) 457
BstSLI GKGCMC 1 cut(s) 22
BstUI CGCG 1 cut(s) 629
BstV1I GCAGC 3 cut(s) 193, 196, 513
BstV2I GAAGAC 2 cut(s) 478, 508
Bsu36I CCTNAGG 1 cut(s) 296
BsuRI GGCC 1 cut(s) 621
BtsCI GGATG 2 cut(s) 32, 254
BtsI GCAGTG 2 cut(s) 519, 596
BtsIMutI CAGTG 5 cut(s) 164, 357, 519, 586, 596
Cac8I GCNNGC 1 cut(s) 587
CaiI CAGNNNCTG 1 cut(s) 359
CciI TCATGA 1 cut(s) 24
CfoI GCGC 1 cut(s) 526
Cfr13I GGNCC 1 cut(s) 610
Csp6I GTAC 1 cut(s) 644
CviAII CATG 3 cut(s) 25, 544, 586
CviJI RGCY 6 cut(s) 46, 88, 93, 150, 206, 621
CviKI_1 RGCY 6 cut(s) 46, 88, 93, 150, 206, 621
CviQI GTAC 1 cut(s) 644
DdeI CTNAG 4 cut(s) 72, 89, 296, 656
DpnI GATC 2 cut(s) 119, 567
DpnII GATC 2 cut(s) 117, 565
DriI GACNNNNNGTC 1 cut(s) 105
EaeI YGGCCR 1 cut(s) 619
Eam1104I CTCTTC 1 cut(s) 549
Eam1105I GACNNNNNGTC 1 cut(s) 105
EarI CTCTTC 1 cut(s) 549
Eco32I GATATC 1 cut(s) 190
Eco47I GGWCC 1 cut(s) 610
Eco81I CCTNAGG 1 cut(s) 296
Eco88I CYCGRG 1 cut(s) 549
EcoO109I RGGNCCY 1 cut(s) 610
EcoRV GATATC 1 cut(s) 190
FaeI CATG 3 cut(s) 28, 547, 589
FaiI YATR 6 cut(s) 26, 279, 344, 476, 545, 587
FaqI GGGAC 2 cut(s) 178, 623
FatI CATG 3 cut(s) 24, 543, 585
Fnu4HI GCNGC 3 cut(s) 207, 210, 527
FokI GGATG 2 cut(s) 19, 241
Fsp4HI GCNGC 3 cut(s) 207, 210, 527
FspBI CTAG 6 cut(s) 215, 237, 443, 533, 539, 703
GlaI GCGC 1 cut(s) 525
GluI GCNGC 3 cut(s) 207, 210, 527
HaeIII GGCC 1 cut(s) 621
HapII CCGG 1 cut(s) 259
HhaI GCGC 1 cut(s) 526
Hin1II CATG 3 cut(s) 28, 547, 589
Hin6I GCGC 1 cut(s) 524
HinP1I GCGC 1 cut(s) 524
HinfI GANTC 4 cut(s) 166, 399, 427, 557
HpaII CCGG 1 cut(s) 259
HphI GGTGA 2 cut(s) 61, 127
Hpy166II GTNNAC 2 cut(s) 20, 222
Hpy188I TCNGA 4 cut(s) 198, 318, 398, 562
Hpy188III TCNNGA 7 cut(s) 25, 79, 126, 267, 295, 367, 551
Hpy8I GTNNAC 2 cut(s) 20, 222
HpyCH4III ACNGT 4 cut(s) 103, 355, 581, 648
HpyCH4V TGCA 5 cut(s) 20, 212, 251, 459, 589
HpyF3I CTNAG 4 cut(s) 72, 89, 296, 656
Hsp92II CATG 3 cut(s) 28, 547, 589
HspAI GCGC 1 cut(s) 524
KflI GGGWCCC 1 cut(s) 610
Kzo9I GATC 2 cut(s) 117, 565
Lsp1109I GCAGC 3 cut(s) 193, 196, 513
LweI GCATC 3 cut(s) 41, 260, 372
MaeI CTAG 6 cut(s) 215, 237, 443, 533, 539, 703
MaeIII GTNAC 3 cut(s) 355, 424, 433
MalI GATC 2 cut(s) 119, 567
MboI GATC 2 cut(s) 117, 565
MboII GAAGA 4 cut(s) 130, 478, 508, 566
MfeI CAATTG 1 cut(s) 375
MhlI GDGCHC 1 cut(s) 22
MlsI TGGCCA 1 cut(s) 621
MluCI AATT 1 cut(s) 375
MluNI TGGCCA 1 cut(s) 621
MlyI GAGTC 4 cut(s) 160, 393, 421, 566
MmeI TCCRAC 1 cut(s) 376
MnlI CCTC 8 cut(s) 67, 75, 78, 291, 296, 382, 558, 666
Mox20I TGGCCA 1 cut(s) 621
MscI TGGCCA 1 cut(s) 621
Msp20I TGGCCA 1 cut(s) 621
MspA1I CMGCKG 1 cut(s) 46
MspI CCGG 1 cut(s) 259
MspR9I CCNGG 1 cut(s) 259
MunI CAATTG 1 cut(s) 375
MvnI CGCG 1 cut(s) 629
NciI CCSGG 1 cut(s) 259
NdeII GATC 2 cut(s) 117, 565
NlaIII CATG 3 cut(s) 28, 547, 589
NlaIV GGNNCC 3 cut(s) 501, 611, 612
NmuCI GTSAC 3 cut(s) 355, 424, 433
NspI RCATGY 1 cut(s) 589
PaeI GCATGC 1 cut(s) 589
PaeR7I CTCGAG 1 cut(s) 549
PagI TCATGA 1 cut(s) 24
PflFI GACNNNGTC 1 cut(s) 539
PkrI GCNGC 3 cut(s) 208, 211, 528
PleI GAGTC 4 cut(s) 160, 393, 421, 565
PpsI GAGTC 4 cut(s) 160, 393, 421, 565
PpuMI RGGWCCY 1 cut(s) 610
Psp5II RGGWCCY 1 cut(s) 610
PspN4I GGNNCC 3 cut(s) 501, 611, 612
PspPI GGNCC 1 cut(s) 610
PspPPI RGGWCCY 1 cut(s) 610
PstI CTGCAG 1 cut(s) 461
PstNI CAGNNNCTG 1 cut(s) 359
PsyI GACNNNGTC 1 cut(s) 539
PvuII CAGCTG 1 cut(s) 46
RsaI GTAC 1 cut(s) 645
RsaNI GTAC 1 cut(s) 644
SatI GCNGC 3 cut(s) 207, 210, 527
Sau3AI GATC 2 cut(s) 117, 565
Sau96I GGNCC 1 cut(s) 610
SchI GAGTC 4 cut(s) 160, 393, 421, 566
ScrFI CCNGG 1 cut(s) 259
SduI GDGCHC 1 cut(s) 22
SetI ASST 7 cut(s) 48, 289, 307, 374, 391, 540, 635
SfaNI GCATC 3 cut(s) 41, 260, 372
SfcI CTRYAG 1 cut(s) 457
Sfr274I CTCGAG 1 cut(s) 549
SinI GGWCC 1 cut(s) 610
SlaI CTCGAG 1 cut(s) 549
SmlI CTYRAG 1 cut(s) 549
SmoI CTYRAG 1 cut(s) 549
SpeI ACTAGT 2 cut(s) 214, 442
SphI GCATGC 1 cut(s) 589
Sse9I AATT 1 cut(s) 375
SsiI CCGC 1 cut(s) 627
SspMI CTAG 6 cut(s) 215, 237, 443, 533, 539, 703
StyD4I CCNGG 1 cut(s) 257
TaaI ACNGT 4 cut(s) 103, 355, 581, 648
TaqI TCGA 1 cut(s) 550
TasI AATT 1 cut(s) 375
TscAI CASTG 5 cut(s) 164, 364, 526, 586, 596
TseFI GTSAC 3 cut(s) 355, 424, 433
TseI GCWGC 3 cut(s) 206, 209, 526
Tsp45I GTSAC 3 cut(s) 355, 424, 433
TspRI CASTG 5 cut(s) 164, 364, 526, 586, 596
Tth111I GACNNNGTC 1 cut(s) 539
VneI GTGCAC 1 cut(s) 18
VpaK11BI GGWCC 1 cut(s) 610
XceI RCATGY 1 cut(s) 589
XhoI CTCGAG 1 cut(s) 549
XspI CTAG 6 cut(s) 215, 237, 443, 533, 539, 703
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.