Rroxscaffold_7G00175740

nucleobase-ascorbate transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0019950
Physical Location & Seq
Reverse (-)
15241890 .. 15248444
6555 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00175740.1

Sequence Viewer

Length: 1197 bp
ATGAACCAACCTGATCTGCCACCGGTGGACGTTGAGGCGGACCTCGAGGCTGCCGCTCGGAATCCTAGTGATTATCCCCAGCCGATTCCGTCAAAGGAATCACTTTGGCCGTCCATCCAGCCCCCACTCGATAGTTCCTTCCCCTCCGGGCAGTGGAGCTACTACCATTGTGATGGCTTTCCAGCACACAGTCGTCATGCTTGGCCAGCTGGTGATGATCGTCAGCCTCCTTGTCCCATTGATGGGGGTGGAGAGGAGGAGAAAGCTAAGATCATATTGATCTCCTTGTTCATATCCGGGTGGACCACGTTGATGCAGTGTTTGCTGGGCACTTTGCTTCCTTCGGCGATGGCATCTTCATCATATGCCTACTTCATTCCGAGTATGGCCATCGCCCAGAGGTTTGCTCATGAGGATCCCTCAAAGAGATTCAGCCAGACCATGAGGACTTTACAGGGTGCACTCATGATGGCATCCCTTTTTCAGCTGGTGATTGCCTCACTTGGGGTTGCTCAGTTCGGGAGGTGGCTCAGCCCTTTGATTGCTGCTCCATTGGTTATCTTATCCGGATTTGGGTTTTTCTCATCAGGCTTCCCCAGATTCTACCTTACATATACTACCACATTTACGATATTCAGCGTTGGAGTCCGGCATCTCGTTACTATGCTTAAGAGGCTGAGGTTAGCATGGAGGATGTTTGGGATACTAGCATCTCTTGGATGGTGTTGGTTACTTGCCTACATTCTATCCATTAGACATGCATATCACCACAGAGCTCCACTCGCTCAGAGTTATTGCCGTACCGAGCGATACGGACTTCTTAGGAGCGCTCCTGGGATATGGTTTCCACTGCCATTACAGTGGGGGACTCCTATTGTTGATTTTAGAGATATCTTTCCGATGTTAGCTGCTGCACTAGTGTCCACTATTGAGAGCATTGGCAGTTTCTCTGGTAGTATGTTTGGCACAGTCACTGGCATCACGATCTCAATGTCTTGTCGGACACACTCGTGTTGCTACCAGAGATGTGACTCCTGTGACAGCACTAGTGATGATATTCTGCAGTTTAGTAGGAAAGATCGGCGCATTTCTTGCTTCGATCCCATTTCCGATTGTAGCTGCGTGGTGAGTGATATAGTCTTGGTCTTCGGCACATCAGCACCGACTATTGGGGTCTTCACTCTGCGCTGCTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Xan_ur_permease

Protein Analysis

398

Amino Acids

44.12

Weight (kDa)

7.5

Isoelectric Point (pI)

56.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Xan_ur_permease PF00860 85 - 316 1.4e-18 Permease family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019950)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0291781
rosa_multiflora Rmu_sc0002226.1_g000033
rosa_roxburghii Rroxscaffold_7G00175740
rosa_samantha Rh6BG047900 Rh6CG046600 Rh6CG347600
rosa_wichuraiana Rw6G028990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 44
AccBSI CCGCTC 1 cut(s) 56
AccIII TCCGGA 1 cut(s) 566
AciI CCGC 2 cut(s) 38, 54
AclWI GGATC 3 cut(s) 410, 423, 1094
AcoI YGGCCR 3 cut(s) 107, 203, 387
AfaI GTAC 1 cut(s) 802
AfeI AGCGCT 1 cut(s) 829
AfiI CCNNNNNNNGG 6 cut(s) 153, 242, 243, 504, 573, 1169
AflII CTTAAG 1 cut(s) 668
AgeI ACCGGT 1 cut(s) 22
AhlI ACTAGT 2 cut(s) 916, 1046
AjnI CCWGG 1 cut(s) 832
AleI CACNNNNGTG 1 cut(s) 1009
AluBI AGCT 7 cut(s) 159, 209, 266, 487, 776, 908, 1119
AluI AGCT 7 cut(s) 159, 209, 266, 487, 776, 908, 1119
Alw21I GWGCWC 2 cut(s) 463, 778
Alw44I GTGCAC 1 cut(s) 459
AlwI GGATC 3 cut(s) 410, 423, 1094
AlwNI CAGNNNCTG 1 cut(s) 974
Ama87I CYCGRG 1 cut(s) 44
Aor13HI TCCGGA 1 cut(s) 566
Aor51HI AGCGCT 1 cut(s) 829
AoxI GGCC 3 cut(s) 107, 203, 387
ApaLI GTGCAC 1 cut(s) 459
ApeKI GCWGC 7 cut(s) 50, 545, 908, 911, 1119, 1188, 1191
AsiGI ACCGGT 1 cut(s) 22
AspLEI GCGC 3 cut(s) 830, 1086, 1188
AspS9I GGNCC 2 cut(s) 40, 303
AsuC2I CCSGG 2 cut(s) 148, 298
AsuHPI GGTGA 4 cut(s) 224, 502, 758, 1138
AvaI CYCGRG 1 cut(s) 44
AvaII GGWCC 2 cut(s) 40, 303
BaeGI GKGCMC 2 cut(s) 332, 463
BalI TGGCCA 2 cut(s) 205, 389
BamHI GGATCC 1 cut(s) 415
BanII GRGCYC 1 cut(s) 778
BauI CACGAG 1 cut(s) 1009
BbsI GAAGAC 2 cut(s) 1138, 1168
Bbv12I GWGCWC 2 cut(s) 463, 778
BbvCI CCTCAGC 1 cut(s) 677
BbvI GCAGC 7 cut(s) 37, 532, 895, 898, 1106, 1175, 1178
BccI CCATC 7 cut(s) 122, 167, 236, 343, 398, 463, 714
BceAI ACGGC 2 cut(s) 94, 783
BciT130I CCWGG 1 cut(s) 834
BciVI GTATCC 1 cut(s) 696
BcnI CCSGG 2 cut(s) 148, 298
BcuI ACTAGT 2 cut(s) 916, 1046
BfaI CTAG 5 cut(s) 66, 707, 917, 1047, 1195
BfmI CTRYAG 1 cut(s) 1061
BfoI RGCGCY 1 cut(s) 831
BfrI CTTAAG 1 cut(s) 668
BfuI GTATCC 1 cut(s) 696
BisI GCNGC 8 cut(s) 51, 54, 546, 909, 912, 1120, 1189, 1192
BlpI GCTNAGC 1 cut(s) 530
BlsI GCNGC 8 cut(s) 52, 55, 547, 910, 913, 1121, 1190, 1193
Bme1390I CCNGG 3 cut(s) 148, 298, 834
Bme18I GGWCC 2 cut(s) 40, 303
BmeT110I CYCGRG 1 cut(s) 44
BmgT120I GGNCC 2 cut(s) 40, 303
BmiI GGNNCC 1 cut(s) 417
BmrFI CCNGG 3 cut(s) 148, 298, 834
BmsI GCATC 6 cut(s) 303, 362, 482, 661, 719, 987
BpiI GAAGAC 2 cut(s) 1138, 1168
BplI GAGNNNNNCTC 6 cut(s) 391, 423, 404, 436, 765, 797
Bpu10I CCTNAGC 1 cut(s) 677
Bpu1102I GCTNAGC 1 cut(s) 530
BpuMI CCSGG 2 cut(s) 148, 298
BsaJI CCNNGG 1 cut(s) 833
BsaWI WCCGGW 2 cut(s) 22, 566
Bsc4I CCNNNNNNNGG 6 cut(s) 153, 242, 243, 504, 573, 1169
Bse118I RCCGGY 1 cut(s) 22
Bse1I ACTGG 1 cut(s) 979
BseAI TCCGGA 1 cut(s) 566
BseBI CCWGG 1 cut(s) 834
BseDI CCNNGG 1 cut(s) 833
BseGI GGATG 4 cut(s) 114, 473, 699, 725
BseLI CCNNNNNNNGG 6 cut(s) 153, 242, 243, 504, 573, 1169
BseMII CTCAG 4 cut(s) 527, 544, 668, 800
BseNI ACTGG 1 cut(s) 979
BseRI GAGGAG 2 cut(s) 269, 272
BseSI GKGCMC 2 cut(s) 332, 463
BseXI GCAGC 7 cut(s) 37, 532, 895, 898, 1106, 1175, 1178
BseYI CCCAGC 2 cut(s) 78, 325
BsgI GTGCAG 1 cut(s) 897
BshFI GGCC 3 cut(s) 109, 205, 389
BshTI ACCGGT 1 cut(s) 22
BsiHKAI GWGCWC 2 cut(s) 463, 778
BsiHKCI CYCGRG 1 cut(s) 44
BsiSI CCGG 5 cut(s) 23, 147, 297, 567, 649
BslFI GGGAC 2 cut(s) 219, 880
BslI CCNNNNNNNGG 6 cut(s) 153, 242, 243, 504, 573, 1169
BsmFI GGGAC 2 cut(s) 219, 880
BsnI GGCC 3 cut(s) 109, 205, 389
BsoBI CYCGRG 1 cut(s) 44
Bsp1286I GDGCHC 3 cut(s) 332, 463, 778
Bsp13I TCCGGA 1 cut(s) 566
Bsp143I GATC 8 cut(s) 13, 217, 270, 279, 415, 984, 1078, 1099
Bsp1720I GCTNAGC 1 cut(s) 530
BspACI CCGC 2 cut(s) 38, 54
BspANI GGCC 3 cut(s) 109, 205, 389
BspCNI CTCAG 4 cut(s) 526, 543, 669, 799
BspEI TCCGGA 1 cut(s) 566
BspHI TCATGA 2 cut(s) 409, 465
BspLI GGNNCC 1 cut(s) 417
BspMAI CTGCAG 1 cut(s) 1065
BspPI GGATC 3 cut(s) 410, 423, 1094
BspTI CTTAAG 1 cut(s) 668
BsrBI CCGCTC 1 cut(s) 56
BsrFI RCCGGY 1 cut(s) 22
BsrI ACTGG 1 cut(s) 979
BssAI RCCGGY 1 cut(s) 22
BssECI CCNNGG 1 cut(s) 833
BssMI GATC 8 cut(s) 13, 217, 270, 279, 415, 984, 1078, 1099
BssSI CACGAG 1 cut(s) 1009
Bst2BI CACGAG 1 cut(s) 1009
Bst2UI CCWGG 1 cut(s) 834
Bst4CI ACNGT 3 cut(s) 191, 861, 970
BstAFI CTTAAG 1 cut(s) 668
BstAPI GCANNNNNTGC 2 cut(s) 322, 1092
BstC8I GCNNGC 1 cut(s) 207
BstDEI CTNAG 6 cut(s) 267, 513, 530, 677, 786, 821
BstF5I GGATG 4 cut(s) 114, 473, 699, 725
BstH2I RGCGCY 1 cut(s) 831
BstHHI GCGC 3 cut(s) 830, 1086, 1188
BstKTI GATC 8 cut(s) 16, 220, 273, 282, 418, 987, 1081, 1102
BstMBI GATC 8 cut(s) 13, 217, 270, 279, 415, 984, 1078, 1099
BstMWI GCNNNNNNNGC 5 cut(s) 206, 322, 673, 782, 1092
BstNI CCWGG 1 cut(s) 834
BstNSI RCATGY 1 cut(s) 761
BstSCI CCNGG 3 cut(s) 146, 296, 832
BstSFI CTRYAG 1 cut(s) 1061
BstSLI GKGCMC 2 cut(s) 332, 463
BstV1I GCAGC 7 cut(s) 37, 532, 895, 898, 1106, 1175, 1178
BstV2I GAAGAC 2 cut(s) 1138, 1168
BstX2I RGATCY 1 cut(s) 415
BstXI CCANNNNNNTGG 2 cut(s) 173, 861
BstYI RGATCY 1 cut(s) 415
BsuI GTATCC 1 cut(s) 696
BsuRI GGCC 3 cut(s) 109, 205, 389
BtgZI GCGATG 2 cut(s) 362, 376
BtsCI GGATG 4 cut(s) 114, 473, 699, 725
BtsI GCAGTG 3 cut(s) 158, 323, 848
BtsIMutI CAGTG 5 cut(s) 158, 323, 848, 866, 972
Cac8I GCNNGC 1 cut(s) 207
CaiI CAGNNNCTG 1 cut(s) 974
CciI TCATGA 2 cut(s) 409, 465
CfoI GCGC 3 cut(s) 830, 1086, 1188
Cfr10I RCCGGY 1 cut(s) 22
Cfr13I GGNCC 2 cut(s) 40, 303
Csp6I GTAC 1 cut(s) 801
CspAI ACCGGT 1 cut(s) 22
CviAII CATG 6 cut(s) 197, 410, 442, 466, 687, 758
CviQI GTAC 1 cut(s) 801
DdeI CTNAG 6 cut(s) 267, 513, 530, 677, 786, 821
DpnI GATC 8 cut(s) 15, 219, 272, 281, 417, 986, 1080, 1101
DpnII GATC 8 cut(s) 13, 217, 270, 279, 415, 984, 1078, 1099
EaeI YGGCCR 3 cut(s) 107, 203, 387
EciI GGCGGA 1 cut(s) 53
Ecl136II GAGCTC 1 cut(s) 776
Eco24I GRGCYC 1 cut(s) 778
Eco32I GATATC 1 cut(s) 892
Eco47I GGWCC 2 cut(s) 40, 303
Eco47III AGCGCT 1 cut(s) 829
Eco53kI GAGCTC 1 cut(s) 776
Eco88I CYCGRG 1 cut(s) 44
EcoICRI GAGCTC 1 cut(s) 776
EcoRII CCWGG 1 cut(s) 832
EcoRV GATATC 1 cut(s) 892
EcoT22I ATGCAT 1 cut(s) 763
EcoT38I GRGCYC 1 cut(s) 778
FaeI CATG 6 cut(s) 200, 413, 445, 469, 690, 761
FaqI GGGAC 2 cut(s) 219, 880
FatI CATG 6 cut(s) 196, 409, 441, 465, 686, 757
FauNDI CATATG 1 cut(s) 364
Fnu4HI GCNGC 8 cut(s) 51, 54, 546, 909, 912, 1120, 1189, 1192
FokI GGATG 4 cut(s) 101, 460, 706, 732
FriOI GRGCYC 1 cut(s) 778
Fsp4HI GCNGC 8 cut(s) 51, 54, 546, 909, 912, 1120, 1189, 1192
FspBI CTAG 5 cut(s) 66, 707, 917, 1047, 1195
GlaI GCGC 3 cut(s) 829, 1085, 1187
GluI GCNGC 8 cut(s) 51, 54, 546, 909, 912, 1120, 1189, 1192
GsaI CCCAGC 2 cut(s) 82, 329
HaeII RGCGCY 1 cut(s) 831
HaeIII GGCC 3 cut(s) 109, 205, 389
HapII CCGG 5 cut(s) 23, 147, 297, 567, 649
HhaI GCGC 3 cut(s) 830, 1086, 1188
Hin1II CATG 6 cut(s) 200, 413, 445, 469, 690, 761
Hin6I GCGC 3 cut(s) 828, 1084, 1186
HinP1I GCGC 3 cut(s) 828, 1084, 1186
HinfI GANTC 8 cut(s) 61, 85, 98, 429, 600, 645, 868, 1031
HpaII CCGG 5 cut(s) 23, 147, 297, 567, 649
HphI GGTGA 4 cut(s) 224, 502, 758, 1138
Hpy166II GTNNAC 4 cut(s) 28, 303, 461, 924
Hpy188I TCNGA 6 cut(s) 60, 381, 789, 900, 1002, 1111
Hpy188III TCNNGA 5 cut(s) 410, 466, 520, 567, 982
Hpy8I GTNNAC 4 cut(s) 28, 303, 461, 924
HpyAV CCTTC 2 cut(s) 148, 351
HpyCH4III ACNGT 3 cut(s) 191, 861, 970
HpyCH4IV ACGT 2 cut(s) 30, 308
HpyCH4V TGCA 5 cut(s) 316, 461, 761, 914, 1063
HpyF10VI GCNNNNNNNGC 5 cut(s) 206, 322, 673, 782, 1092
HpyF3I CTNAG 6 cut(s) 267, 513, 530, 677, 786, 821
HpySE526I ACGT 2 cut(s) 30, 308
Hsp92II CATG 6 cut(s) 200, 413, 445, 469, 690, 761
HspAI GCGC 3 cut(s) 828, 1084, 1186
Kpn2I TCCGGA 1 cut(s) 566
Kzo9I GATC 8 cut(s) 13, 217, 270, 279, 415, 984, 1078, 1099
LmnI GCTCC 5 cut(s) 156, 553, 781, 825, 835
Lsp1109I GCAGC 7 cut(s) 37, 532, 895, 898, 1106, 1175, 1178
LweI GCATC 6 cut(s) 303, 362, 482, 661, 719, 987
MaeI CTAG 5 cut(s) 66, 707, 917, 1047, 1195
MaeII ACGT 2 cut(s) 30, 308
MaeIII GTNAC 5 cut(s) 658, 729, 970, 1028, 1037
MalI GATC 8 cut(s) 15, 219, 272, 281, 417, 986, 1080, 1101
MbiI CCGCTC 1 cut(s) 56
MboI GATC 8 cut(s) 13, 217, 270, 279, 415, 984, 1078, 1099
MboII GAAGA 3 cut(s) 348, 1138, 1168
MflI RGATCY 1 cut(s) 415
MhlI GDGCHC 3 cut(s) 332, 463, 778
MlsI TGGCCA 2 cut(s) 205, 389
MluNI TGGCCA 2 cut(s) 205, 389
MlyI GAGTC 3 cut(s) 654, 862, 1025
MmeI TCCRAC 2 cut(s) 622, 980
Mox20I TGGCCA 2 cut(s) 205, 389
Mph1103I ATGCAT 1 cut(s) 763
MroI TCCGGA 1 cut(s) 566
MscI TGGCCA 2 cut(s) 205, 389
MseI TTAA 1 cut(s) 669
MslI CAYNNNNRTG 4 cut(s) 171, 311, 859, 1009
Msp20I TGGCCA 2 cut(s) 205, 389
MspA1I CMGCKG 2 cut(s) 209, 487
MspCI CTTAAG 1 cut(s) 668
MspI CCGG 5 cut(s) 23, 147, 297, 567, 649
MspR9I CCNGG 3 cut(s) 148, 298, 834
MvaI CCWGG 1 cut(s) 834
MwoI GCNNNNNNNGC 5 cut(s) 206, 322, 673, 782, 1092
NciI CCSGG 2 cut(s) 148, 298
NdeI CATATG 1 cut(s) 364
NdeII GATC 8 cut(s) 13, 217, 270, 279, 415, 984, 1078, 1099
NlaIII CATG 6 cut(s) 200, 413, 445, 469, 690, 761
NlaIV GGNNCC 1 cut(s) 417
NmuCI GTSAC 3 cut(s) 970, 1028, 1037
NsiI ATGCAT 1 cut(s) 763
NspI RCATGY 1 cut(s) 761
OliI CACNNNNGTG 1 cut(s) 1009
PaeR7I CTCGAG 1 cut(s) 44
PagI TCATGA 2 cut(s) 409, 465
PfeI GAWTC 5 cut(s) 61, 85, 98, 429, 600
PinAI ACCGGT 1 cut(s) 22
PkrI GCNGC 8 cut(s) 52, 55, 547, 910, 913, 1121, 1190, 1193
PleI GAGTC 3 cut(s) 653, 862, 1025
PpsI GAGTC 3 cut(s) 653, 862, 1025
Psp124BI GAGCTC 1 cut(s) 778
Psp6I CCWGG 1 cut(s) 832
PspFI CCCAGC 2 cut(s) 78, 325
PspGI CCWGG 1 cut(s) 832
PspN4I GGNNCC 1 cut(s) 417
PspPI GGNCC 2 cut(s) 40, 303
PspXI VCTCGAGB 1 cut(s) 44
PstI CTGCAG 1 cut(s) 1065
PstNI CAGNNNCTG 1 cut(s) 974
PsuI RGATCY 1 cut(s) 415
PvuII CAGCTG 2 cut(s) 209, 487
RsaI GTAC 1 cut(s) 802
RsaNI GTAC 1 cut(s) 801
RseI CAYNNNNRTG 4 cut(s) 171, 311, 859, 1009
SacI GAGCTC 1 cut(s) 778
SaqAI TTAA 1 cut(s) 669
SatI GCNGC 8 cut(s) 51, 54, 546, 909, 912, 1120, 1189, 1192
Sau3AI GATC 8 cut(s) 13, 217, 270, 279, 415, 984, 1078, 1099
Sau96I GGNCC 2 cut(s) 40, 303
SchI GAGTC 3 cut(s) 654, 862, 1025
ScrFI CCNGG 3 cut(s) 148, 298, 834
SduI GDGCHC 3 cut(s) 332, 463, 778
SfaNI GCATC 6 cut(s) 303, 362, 482, 661, 719, 987
SfcI CTRYAG 1 cut(s) 1061
Sfr274I CTCGAG 1 cut(s) 44
SgrAI CRCCGGYG 1 cut(s) 22
SinI GGWCC 2 cut(s) 40, 303
SlaI CTCGAG 1 cut(s) 44
SmiMI CAYNNNNRTG 4 cut(s) 171, 311, 859, 1009
SmlI CTYRAG 2 cut(s) 44, 668
SmoI CTYRAG 2 cut(s) 44, 668
SpeI ACTAGT 2 cut(s) 916, 1046
SsiI CCGC 2 cut(s) 38, 54
SspMI CTAG 5 cut(s) 66, 707, 917, 1047, 1195
SstI GAGCTC 1 cut(s) 778
StyD4I CCNGG 3 cut(s) 146, 296, 832
TaaI ACNGT 3 cut(s) 191, 861, 970
TaiI ACGT 2 cut(s) 33, 311
TaqI TCGA 3 cut(s) 45, 129, 1098
TauI GCSGC 1 cut(s) 56
TfiI GAWTC 5 cut(s) 61, 85, 98, 429, 600
Tru1I TTAA 1 cut(s) 669
Tru9I TTAA 1 cut(s) 669
TscAI CASTG 5 cut(s) 158, 323, 855, 866, 979
TseFI GTSAC 3 cut(s) 970, 1028, 1037
TseI GCWGC 7 cut(s) 50, 545, 908, 911, 1119, 1188, 1191
Tsp45I GTSAC 3 cut(s) 970, 1028, 1037
TspDTI ATGAA 4 cut(s) 17, 280, 348, 364
TspGWI ACGGA 2 cut(s) 78, 828
TspRI CASTG 5 cut(s) 158, 323, 855, 866, 979
Vha464I CTTAAG 1 cut(s) 668
VneI GTGCAC 1 cut(s) 459
VpaK11BI GGWCC 2 cut(s) 40, 303
XceI RCATGY 1 cut(s) 761
XhoI CTCGAG 1 cut(s) 44
XspI CTAG 5 cut(s) 66, 707, 917, 1047, 1195
Zsp2I ATGCAT 1 cut(s) 763
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.