Rh6BG047900

nucleobase-ascorbate transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0019950
Physical Location & Seq
Reverse (-)
7917790 .. 7923394
5605 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG047900.1

Sequence Viewer

Length: 1149 bp
ATGGCGGCACAAAAAGCCGATGACTTCCAGCCACATCCGGTGAAGGAGCAGCTTCCCGGCGTCGACTTCTGCATGACCTCCTCTCCTCCTTGGCCTGAAGCCATACTTCTGGGATTTCAGAACTTTCTTGTTATGTTGGGCACCACTGTGTTCATCCCCACCGTGCTTGTCCCTATAATGGGTGGTGGTGATGTAGAGAAGGCAGAAGTGATTGATACTGTGCTCTTTGTCGCTGGCATTAATACACTGTTACAGACTTGGTTTGGGACTCGTATCCCTGTGGTGATGGGGGCTTCATACGCTTTCATCATCCCTGCTCTCTCCATTGCTCATTCCAGGAGGTTCAGTGTATTCATAGACCCCCACCAGAGGTTCAGAGAAACTATGAAAGCAATACAAGGAGCACTCATAATTGCATCATTCTTGCAAATGATCCTTGGCTTTTTGGGATTTGTGAGAATTTTTGGGAGGTATCTTAGTCCTCTCTCTTCTGTTCCTCTAGTGACTCTTACTGGACTGGGGTTCTTTGTACTTGGTTTTCCTTTGTTGGCAAATTGTGTTGAAGTTGGATTACCGGCCTTAGTTATATTGCTTCTTCTATCACAGTATGCCTCCACAATGAAGTTAAAGATACCAATATTTGTTAGATTTGCAGTACTATTCACTGTTGCAATAGTATGGGTGTACGCAGTAATTTTGACTGCAGCTGGTGCTTATGATCATAGATCCCCTAGAACTCAAACTAGCTGCCGCACTGATCGTTCTGGGCTTGTCAGGGCTGCTCCTTGGGTAAGGGTTCCTTATCCATTCCAATGGGGGCGGCCGGATTTTAATGCTGGATATACTCTTGCAATTATGGCTGCTGCTTTTGTTGCCATGATTGAGTCCATAGGTGTATTCATTGCTGCATCAAGATATGGGAGTGCCACCCCTCCACCACCTTCTGTTCTGAGCCGAGGTATAGGCTGGCAGGGCATAAGCACTCTTCTGAATGGGATCTTTTGCTCATTAACTGGCTCAACTGCATCAGTTGAAAATGCAGGTTTGTTGGGATTGACACGTGTTGGAAGTCGAAGAGTGATCCAAATATCAGCAGGCTTTATGTTTTTCTTCTCTGTATTAGGTGTGTGTGGTATATATTGCATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Xan_ur_permease

Protein Analysis

382

Amino Acids

41.38

Weight (kDa)

9.48

Isoelectric Point (pI)

33.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Xan_ur_permease PF00860 34 - 374 1.3e-48 Permease family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019950)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0291781
rosa_multiflora Rmu_sc0002226.1_g000033
rosa_roxburghii Rroxscaffold_7G00175740
rosa_samantha Rh6BG047900 Rh6CG046600 Rh6CG347600
rosa_wichuraiana Rw6G028990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1031
AccB1I GGYRCC 1 cut(s) 140
AccI GTMKAC 1 cut(s) 63
AciI CCGC 3 cut(s) 5, 751, 820
AclWI GGATC 4 cut(s) 427, 720, 1004, 1075
AcoI YGGCCR 1 cut(s) 821
AcsI RAATTY 1 cut(s) 459
AcuI CTGAAG 1 cut(s) 117
AcvI CACGTG 1 cut(s) 1061
AcyI GRCGYC 1 cut(s) 60
AfaI GTAC 3 cut(s) 531, 657, 686
AfiI CCNNNNNNNGG 3 cut(s) 178, 179, 369
AflIII ACRYGT 2 cut(s) 1058, 1060
AgsI TTSAA 2 cut(s) 563, 1034
AjnI CCWGG 1 cut(s) 335
AleI CACNNNNGTG 1 cut(s) 146
AluBI AGCT 3 cut(s) 52, 707, 747
AluI AGCT 3 cut(s) 52, 707, 747
Alw21I GWGCWC 2 cut(s) 225, 406
AlwI GGATC 4 cut(s) 427, 720, 1004, 1075
AoxI GGCC 3 cut(s) 92, 576, 821
ApeKI GCWGC 7 cut(s) 49, 704, 747, 779, 860, 863, 905
ApoI RAATTY 1 cut(s) 459
AseI ATTAAT 1 cut(s) 240
AsuC2I CCSGG 1 cut(s) 57
AsuHPI GGTGA 3 cut(s) 52, 200, 295
BaeGI GKGCMC 1 cut(s) 143
BanI GGYRCC 1 cut(s) 140
BarI GAAGNNNNNNTAC 2 cut(s) 555, 587
BbrPI CACGTG 1 cut(s) 1061
Bbv12I GWGCWC 2 cut(s) 225, 406
BbvI GCAGC 7 cut(s) 61, 716, 734, 766, 847, 850, 892
BccI CCATC 1 cut(s) 280
BciT130I CCWGG 1 cut(s) 337
BciVI GTATCC 1 cut(s) 284
BclI TGATCA 1 cut(s) 718
BcnI CCSGG 1 cut(s) 57
BfaI CTAG 3 cut(s) 500, 732, 744
BfmI CTRYAG 1 cut(s) 702
BfuAI ACCTGC 1 cut(s) 1031
BfuI GTATCC 1 cut(s) 284
BmcAI AGTACT 1 cut(s) 657
Bme1390I CCNGG 2 cut(s) 57, 337
BmiI GGNNCC 2 cut(s) 142, 798
BmrFI CCNGG 2 cut(s) 57, 337
BmrI ACTGGG 1 cut(s) 527
BmsI GCATC 3 cut(s) 425, 917, 1034
BmuI ACTGGG 1 cut(s) 527
BpuMI CCSGG 1 cut(s) 57
BsaAI YACGTR 1 cut(s) 1061
BsaHI GRCGYC 1 cut(s) 60
BsaJI CCNNGG 4 cut(s) 89, 436, 785, 955
BsaWI WCCGGW 1 cut(s) 37
BsaXI ACNNNNNCTCC 4 cut(s) 67, 97, 331, 361
Bsc4I CCNNNNNNNGG 3 cut(s) 178, 179, 369
Bse118I RCCGGY 1 cut(s) 574
Bse1I ACTGG 3 cut(s) 517, 522, 1018
Bse3DI GCAATG 2 cut(s) 324, 900
BseBI CCWGG 1 cut(s) 337
BseDI CCNNGG 4 cut(s) 89, 436, 785, 955
BseGI GGATG 3 cut(s) 34, 153, 309
BseLI CCNNNNNNNGG 3 cut(s) 178, 179, 369
BseMI GCAATG 2 cut(s) 324, 900
BseMII CTCAG 1 cut(s) 941
BseNI ACTGG 3 cut(s) 517, 522, 1018
BseRI GAGGAG 2 cut(s) 70, 75
BseSI GKGCMC 1 cut(s) 143
BseX3I CGGCCG 1 cut(s) 821
BseXI GCAGC 7 cut(s) 61, 716, 734, 766, 847, 850, 892
Bsh1285I CGRYCG 1 cut(s) 824
BshFI GGCC 3 cut(s) 94, 578, 823
BshNI GGYRCC 1 cut(s) 140
BsiEI CGRYCG 1 cut(s) 824
BsiHKAI GWGCWC 2 cut(s) 225, 406
BsiSI CCGG 4 cut(s) 38, 57, 575, 824
BslFI GGGAC 2 cut(s) 155, 280
BslI CCNNNNNNNGG 3 cut(s) 178, 179, 369
BsmFI GGGAC 2 cut(s) 155, 280
BsnI GGCC 3 cut(s) 94, 578, 823
Bsp1286I GDGCHC 3 cut(s) 143, 225, 406
Bsp143I GATC 6 cut(s) 432, 718, 725, 757, 996, 1080
BspACI CCGC 3 cut(s) 5, 751, 820
BspANI GGCC 3 cut(s) 94, 578, 823
BspCNI CTCAG 1 cut(s) 942
BspLI GGNNCC 2 cut(s) 142, 798
BspMAI CTGCAG 1 cut(s) 706
BspMI ACCTGC 1 cut(s) 1031
BspPI GGATC 4 cut(s) 427, 720, 1004, 1075
BspT107I GGYRCC 1 cut(s) 140
BsrDI GCAATG 2 cut(s) 324, 900
BsrFI RCCGGY 1 cut(s) 574
BsrI ACTGG 3 cut(s) 517, 522, 1018
BssAI RCCGGY 1 cut(s) 574
BssECI CCNNGG 4 cut(s) 89, 436, 785, 955
BssMI GATC 6 cut(s) 432, 718, 725, 757, 996, 1080
BssNI GRCGYC 1 cut(s) 60
BssT1I CCWWGG 3 cut(s) 89, 436, 785
Bst2UI CCWGG 1 cut(s) 337
Bst4CI ACNGT 6 cut(s) 148, 163, 220, 249, 606, 667
Bst6I CTCTTC 3 cut(s) 493, 990, 1069
BstACI GRCGYC 1 cut(s) 60
BstAPI GCANNNNNTGC 1 cut(s) 710
BstBAI YACGTR 1 cut(s) 1061
BstC8I GCNNGC 3 cut(s) 235, 968, 1096
BstDEI CTNAG 3 cut(s) 476, 580, 950
BstF5I GGATG 3 cut(s) 34, 153, 309
BstKTI GATC 6 cut(s) 435, 721, 728, 760, 999, 1083
BstMBI GATC 6 cut(s) 432, 718, 725, 757, 996, 1080
BstMCI CGRYCG 1 cut(s) 824
BstMWI GCNNNNNNNGC 6 cut(s) 14, 299, 710, 857, 872, 972
BstNI CCWGG 1 cut(s) 337
BstNSI RCATGY 1 cut(s) 1147
BstSCI CCNGG 2 cut(s) 55, 335
BstSFI CTRYAG 1 cut(s) 702
BstSLI GKGCMC 1 cut(s) 143
BstV1I GCAGC 7 cut(s) 61, 716, 734, 766, 847, 850, 892
BstX2I RGATCY 2 cut(s) 725, 996
BstXI CCANNNNNNTGG 2 cut(s) 109, 813
BstYI RGATCY 2 cut(s) 725, 996
BstZI CGGCCG 1 cut(s) 821
BsuI GTATCC 1 cut(s) 284
BsuRI GGCC 3 cut(s) 94, 578, 823
BtsCI GGATG 3 cut(s) 34, 153, 309
BtsIMutI CAGTG 5 cut(s) 144, 245, 352, 663, 753
BveI ACCTGC 1 cut(s) 1031
Cac8I GCNNGC 3 cut(s) 235, 968, 1096
Cfr10I RCCGGY 1 cut(s) 574
CseI GACGC 1 cut(s) 49
Csp6I GTAC 3 cut(s) 530, 656, 685
CspCI CAANNNNNGTGG 2 cut(s) 148, 183
CviAII CATG 3 cut(s) 73, 877, 1144
CviQI GTAC 3 cut(s) 530, 656, 685
DdeI CTNAG 3 cut(s) 476, 580, 950
DpnI GATC 6 cut(s) 434, 720, 727, 759, 998, 1082
DpnII GATC 6 cut(s) 432, 718, 725, 757, 996, 1080
EaeI YGGCCR 1 cut(s) 821
EagI CGGCCG 1 cut(s) 821
Eam1104I CTCTTC 3 cut(s) 493, 990, 1069
EarI CTCTTC 3 cut(s) 493, 990, 1069
EclXI CGGCCG 1 cut(s) 821
Eco130I CCWWGG 3 cut(s) 89, 436, 785
Eco52I CGGCCG 1 cut(s) 821
Eco57I CTGAAG 1 cut(s) 117
Eco72I CACGTG 1 cut(s) 1061
EcoRII CCWGG 1 cut(s) 335
EcoT14I CCWWGG 3 cut(s) 89, 436, 785
ErhI CCWWGG 3 cut(s) 89, 436, 785
FaeI CATG 3 cut(s) 76, 880, 1147
FalI AAGNNNNNCTT 4 cut(s) 90, 122, 784, 816
FaqI GGGAC 2 cut(s) 155, 280
FatI CATG 3 cut(s) 72, 876, 1143
FbaI TGATCA 1 cut(s) 718
FblI GTMKAC 1 cut(s) 63
FokI GGATG 3 cut(s) 21, 140, 296
FspBI CTAG 3 cut(s) 500, 732, 744
HaeIII GGCC 3 cut(s) 94, 578, 823
HapII CCGG 4 cut(s) 38, 57, 575, 824
HgaI GACGC 1 cut(s) 49
Hin1I GRCGYC 1 cut(s) 60
Hin1II CATG 3 cut(s) 76, 880, 1147
HincII GTYRAC 1 cut(s) 64
HindII GTYRAC 1 cut(s) 64
HinfI GANTC 3 cut(s) 268, 505, 884
HpaII CCGG 4 cut(s) 38, 57, 575, 824
HphI GGTGA 3 cut(s) 52, 200, 295
Hpy166II GTNNAC 2 cut(s) 64, 685
Hpy188I TCNGA 4 cut(s) 120, 377, 951, 990
Hpy188III TCNNGA 1 cut(s) 912
Hpy8I GTNNAC 2 cut(s) 64, 685
Hpy99I CGWCG 1 cut(s) 65
HpyAV CCTTC 3 cut(s) 37, 193, 951
HpyCH4III ACNGT 6 cut(s) 148, 163, 220, 249, 606, 667
HpyCH4IV ACGT 1 cut(s) 1060
HpyF10VI GCNNNNNNNGC 6 cut(s) 14, 299, 710, 857, 872, 972
HpyF3I CTNAG 3 cut(s) 476, 580, 950
HpySE526I ACGT 1 cut(s) 1060
Hsp92I GRCGYC 1 cut(s) 60
Hsp92II CATG 3 cut(s) 76, 880, 1147
Ksp22I TGATCA 1 cut(s) 718
Kzo9I GATC 6 cut(s) 432, 718, 725, 757, 996, 1080
LmnI GCTCC 3 cut(s) 46, 401, 787
Lsp1109I GCAGC 7 cut(s) 61, 716, 734, 766, 847, 850, 892
LweI GCATC 3 cut(s) 425, 917, 1034
MaeI CTAG 3 cut(s) 500, 732, 744
MaeII ACGT 1 cut(s) 1060
MaeIII GTNAC 2 cut(s) 249, 502
MalI GATC 6 cut(s) 434, 720, 727, 759, 998, 1082
MboI GATC 6 cut(s) 432, 718, 725, 757, 996, 1080
MboII GAAGA 5 cut(s) 480, 587, 977, 1086, 1102
MflI RGATCY 2 cut(s) 725, 996
MhlI GDGCHC 3 cut(s) 143, 225, 406
MluCI AATT 5 cut(s) 411, 459, 553, 693, 852
MlyI GAGTC 3 cut(s) 262, 499, 893
MmeI TCCRAC 2 cut(s) 547, 1045
MseI TTAA 4 cut(s) 240, 626, 831, 1010
MslI CAYNNNNRTG 2 cut(s) 146, 811
MspA1I CMGCKG 1 cut(s) 707
MspI CCGG 4 cut(s) 38, 57, 575, 824
MspR9I CCNGG 2 cut(s) 57, 337
MvaI CCWGG 1 cut(s) 337
MwoI GCNNNNNNNGC 6 cut(s) 14, 299, 710, 857, 872, 972
NciI CCSGG 1 cut(s) 57
NdeII GATC 6 cut(s) 432, 718, 725, 757, 996, 1080
NlaIII CATG 3 cut(s) 76, 880, 1147
NlaIV GGNNCC 2 cut(s) 142, 798
NmeAIII GCCGAG 1 cut(s) 980
NmuCI GTSAC 1 cut(s) 502
NspI RCATGY 1 cut(s) 1147
OliI CACNNNNGTG 1 cut(s) 146
PfoI TCCNGGA 1 cut(s) 335
PleI GAGTC 3 cut(s) 262, 499, 892
PmaCI CACGTG 1 cut(s) 1061
PmlI CACGTG 1 cut(s) 1061
PpsI GAGTC 3 cut(s) 262, 499, 892
Ppu21I YACGTR 1 cut(s) 1061
PshBI ATTAAT 1 cut(s) 240
Psp6I CCWGG 1 cut(s) 335
PspCI CACGTG 1 cut(s) 1061
PspGI CCWGG 1 cut(s) 335
PspN4I GGNNCC 2 cut(s) 142, 798
PstI CTGCAG 1 cut(s) 706
PsuI RGATCY 2 cut(s) 725, 996
PvuII CAGCTG 1 cut(s) 707
RsaI GTAC 3 cut(s) 531, 657, 686
RsaNI GTAC 3 cut(s) 530, 656, 685
RseI CAYNNNNRTG 2 cut(s) 146, 811
SalI GTCGAC 1 cut(s) 62
SaqAI TTAA 4 cut(s) 240, 626, 831, 1010
Sau3AI GATC 6 cut(s) 432, 718, 725, 757, 996, 1080
ScaI AGTACT 1 cut(s) 657
SchI GAGTC 3 cut(s) 262, 499, 893
ScrFI CCNGG 2 cut(s) 57, 337
SduI GDGCHC 3 cut(s) 143, 225, 406
SfaNI GCATC 3 cut(s) 425, 917, 1034
SfcI CTRYAG 1 cut(s) 702
SmiMI CAYNNNNRTG 2 cut(s) 146, 811
Sse9I AATT 5 cut(s) 411, 459, 553, 693, 852
SsiI CCGC 3 cut(s) 5, 751, 820
SspI AATATT 1 cut(s) 639
SspMI CTAG 3 cut(s) 500, 732, 744
StyD4I CCNGG 2 cut(s) 55, 335
StyI CCWWGG 3 cut(s) 89, 436, 785
TaaI ACNGT 6 cut(s) 148, 163, 220, 249, 606, 667
TaiI ACGT 1 cut(s) 1063
TaqI TCGA 2 cut(s) 63, 1072
TasI AATT 5 cut(s) 411, 459, 553, 693, 852
TatI WGTACW 2 cut(s) 529, 655
TauI GCSGC 3 cut(s) 8, 753, 823
Tru1I TTAA 4 cut(s) 240, 626, 831, 1010
Tru9I TTAA 4 cut(s) 240, 626, 831, 1010
TscAI CASTG 5 cut(s) 151, 252, 352, 670, 760
TseFI GTSAC 1 cut(s) 502
TseI GCWGC 7 cut(s) 49, 704, 747, 779, 860, 863, 905
Tsp45I GTSAC 1 cut(s) 502
TspDTI ATGAA 7 cut(s) 142, 285, 295, 343, 401, 635, 889
TspRI CASTG 5 cut(s) 151, 252, 352, 670, 760
VspI ATTAAT 1 cut(s) 240
XapI RAATTY 1 cut(s) 459
XceI RCATGY 1 cut(s) 1147
XmiI GTMKAC 1 cut(s) 63
XspI CTAG 3 cut(s) 500, 732, 744
ZrmI AGTACT 1 cut(s) 657
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.