Rh6CG046600

nucleobase-ascorbate transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0019950
Physical Location & Seq
Reverse (-)
4576127 .. 4579116
2990 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG046600.1

Sequence Viewer

Length: 783 bp
ATGTTGGGCACCACTGTGTTCATCCCCACCTTGCTTGTCCCTATAATGGGTGGTGGCGATGTAGAGAAGGCAAAAGTGATTGATACTGTGCTCTTTGTCGCCGGCATTAACACACTATTACAGACTTGGTTTGGGACTCGTATCCCTGTGGTGATGGGGGCTTCATACGCTTTCATCATCCCTGCTCTCTCCATCGCTTATTCCAGGAGGTTCAGTGTATTCATAGACCCCCACCAGAGGTTCAGAGAAACTATGCAAGCAATACAAGGAGCAATCATAATTGCATCATTCTTGCAAATGATCCTTGGCTTTTTGGGGTTTGTGAGAATTTTTGGGAGGCATCTTAGTCCTCTATCTTCTGTTCCTCTAGTGACTCTTACTGGACTGGGGTTCTTTGTACTTGGTTTTCCTTTGTTGGCAAAATGTGTTGAAGTTGGATTACCGGCCCTACTTATATTGCTTCTTCTATCACAGTATGCCTCCACAATGAAGTTAAAGATACCAATATTTGATCGATTTGCGGTACTATTCACTGTTGCAATAGTATGGGTGTACGCAGTAATTTTGACTGCAGGTGGTGCTTATGATCATAGATCCCCTAGAACTCAAACTAGCTGCCGCACTGATCGTTCTGGGCTTGTCAGGGCTGCTCCTTGGGTAAGGGTTCCCTATCCATTCCAATGGGGGCGGCCGGATTTTAAGGCTGGAGATACTGTTGCAATTATGGCTGCTGCTTTTGTTTCCATAATTGAGGTACAAATTAGGGAGCTGATTCTTATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Xan_ur_permease

Protein Analysis

260

Amino Acids

28.59

Weight (kDa)

10.0

Isoelectric Point (pI)

33.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Xan_ur_permease PF00860 6 - 251 7.3e-28 Permease family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019950)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0291781
rosa_multiflora Rmu_sc0002226.1_g000033
rosa_roxburghii Rroxscaffold_7G00175740
rosa_samantha Rh6BG047900 Rh6CG046600 Rh6CG347600
rosa_wichuraiana Rw6G028990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 563
Acc36I ACCTGC 1 cut(s) 563
AccB1I GGYRCC 1 cut(s) 8
AciI CCGC 3 cut(s) 521, 619, 688
AclWI GGATC 2 cut(s) 295, 588
AcoI YGGCCR 1 cut(s) 689
AcsI RAATTY 1 cut(s) 327
AfaI GTAC 4 cut(s) 399, 525, 554, 756
AfiI CCNNNNNNNGG 3 cut(s) 46, 47, 237
AgsI TTSAA 1 cut(s) 431
AjnI CCWGG 1 cut(s) 203
AleI CACNNNNGTG 1 cut(s) 14
AluBI AGCT 2 cut(s) 615, 769
AluI AGCT 2 cut(s) 615, 769
Alw21I GWGCWC 1 cut(s) 93
AlwI GGATC 2 cut(s) 295, 588
AoxI GGCC 2 cut(s) 444, 689
ApeKI GCWGC 4 cut(s) 615, 647, 728, 731
ApoI RAATTY 1 cut(s) 327
AspS9I GGNCC 1 cut(s) 445
AsuHPI GGTGA 1 cut(s) 163
BaeGI GKGCMC 1 cut(s) 11
BanI GGYRCC 1 cut(s) 8
BarI GAAGNNNNNNTAC 2 cut(s) 423, 455
Bbv12I GWGCWC 1 cut(s) 93
BbvI GCAGC 4 cut(s) 602, 634, 715, 718
BccI CCATC 2 cut(s) 148, 200
BciT130I CCWGG 1 cut(s) 205
BciVI GTATCC 1 cut(s) 152
BclI TGATCA 1 cut(s) 586
BfaI CTAG 3 cut(s) 368, 600, 612
BfmI CTRYAG 1 cut(s) 570
BfuAI ACCTGC 1 cut(s) 563
BfuI GTATCC 1 cut(s) 152
BisI GCNGC 6 cut(s) 616, 619, 648, 689, 729, 732
BlsI GCNGC 6 cut(s) 617, 620, 649, 690, 730, 733
Bme1390I CCNGG 1 cut(s) 205
BmgT120I GGNCC 1 cut(s) 445
BmiI GGNNCC 2 cut(s) 10, 666
BmrFI CCNGG 1 cut(s) 205
BmrI ACTGGG 1 cut(s) 395
BmsI GCATC 2 cut(s) 293, 349
BmuI ACTGGG 1 cut(s) 395
BpmI CTGGAG 1 cut(s) 726
Bsa29I ATCGAT 1 cut(s) 514
BsaJI CCNNGG 2 cut(s) 304, 653
BsaXI ACNNNNNCTCC 4 cut(s) 199, 229, 699, 729
Bsc4I CCNNNNNNNGG 3 cut(s) 46, 47, 237
Bse118I RCCGGY 2 cut(s) 101, 442
Bse1I ACTGG 2 cut(s) 385, 390
BseBI CCWGG 1 cut(s) 205
BseCI ATCGAT 1 cut(s) 514
BseDI CCNNGG 2 cut(s) 304, 653
BseGI GGATG 2 cut(s) 21, 177
BseLI CCNNNNNNNGG 3 cut(s) 46, 47, 237
BseNI ACTGG 2 cut(s) 385, 390
BseSI GKGCMC 1 cut(s) 11
BseX3I CGGCCG 1 cut(s) 689
BseXI GCAGC 4 cut(s) 602, 634, 715, 718
Bsh1285I CGRYCG 1 cut(s) 692
BshFI GGCC 2 cut(s) 446, 691
BshNI GGYRCC 1 cut(s) 8
BshVI ATCGAT 1 cut(s) 514
BsiEI CGRYCG 1 cut(s) 692
BsiHKAI GWGCWC 1 cut(s) 93
BsiSI CCGG 3 cut(s) 102, 443, 692
BslFI GGGAC 2 cut(s) 23, 148
BslI CCNNNNNNNGG 3 cut(s) 46, 47, 237
BsmFI GGGAC 2 cut(s) 23, 148
BsnI GGCC 2 cut(s) 446, 691
Bsp1286I GDGCHC 2 cut(s) 11, 93
Bsp143I GATC 5 cut(s) 300, 511, 586, 593, 625
BspACI CCGC 3 cut(s) 521, 619, 688
BspANI GGCC 2 cut(s) 446, 691
BspDI ATCGAT 1 cut(s) 514
BspLI GGNNCC 2 cut(s) 10, 666
BspMAI CTGCAG 1 cut(s) 574
BspMI ACCTGC 1 cut(s) 563
BspPI GGATC 2 cut(s) 295, 588
BspT107I GGYRCC 1 cut(s) 8
BsrFI RCCGGY 2 cut(s) 101, 442
BsrI ACTGG 2 cut(s) 385, 390
BssAI RCCGGY 2 cut(s) 101, 442
BssECI CCNNGG 2 cut(s) 304, 653
BssMI GATC 5 cut(s) 300, 511, 586, 593, 625
BssT1I CCWWGG 2 cut(s) 304, 653
Bst2UI CCWGG 1 cut(s) 205
Bst4CI ACNGT 5 cut(s) 16, 88, 474, 535, 715
BstAPI GCANNNNNTGC 1 cut(s) 578
BstC8I GCNNGC 2 cut(s) 103, 258
BstDEI CTNAG 1 cut(s) 344
BstF5I GGATG 2 cut(s) 21, 177
BstKTI GATC 5 cut(s) 303, 514, 589, 596, 628
BstMBI GATC 5 cut(s) 300, 511, 586, 593, 625
BstMCI CGRYCG 1 cut(s) 692
BstMWI GCNNNNNNNGC 3 cut(s) 167, 578, 725
BstNI CCWGG 1 cut(s) 205
BstSCI CCNGG 1 cut(s) 203
BstSFI CTRYAG 1 cut(s) 570
BstSLI GKGCMC 1 cut(s) 11
BstV1I GCAGC 4 cut(s) 602, 634, 715, 718
BstX2I RGATCY 1 cut(s) 593
BstXI CCANNNNNNTGG 1 cut(s) 681
BstYI RGATCY 1 cut(s) 593
BstZI CGGCCG 1 cut(s) 689
Bsu15I ATCGAT 1 cut(s) 514
BsuI GTATCC 1 cut(s) 152
BsuRI GGCC 2 cut(s) 446, 691
BsuTUI ATCGAT 1 cut(s) 514
BtgZI GCGATG 2 cut(s) 72, 178
BtsCI GGATG 2 cut(s) 21, 177
BtsIMutI CAGTG 4 cut(s) 12, 220, 531, 621
BveI ACCTGC 1 cut(s) 563
Cac8I GCNNGC 2 cut(s) 103, 258
Cfr10I RCCGGY 2 cut(s) 101, 442
Cfr13I GGNCC 1 cut(s) 445
ClaI ATCGAT 1 cut(s) 514
Csp6I GTAC 4 cut(s) 398, 524, 553, 755
CspCI CAANNNNNGTGG 2 cut(s) 16, 51
CviQI GTAC 4 cut(s) 398, 524, 553, 755
DdeI CTNAG 1 cut(s) 344
DpnI GATC 5 cut(s) 302, 513, 588, 595, 627
DpnII GATC 5 cut(s) 300, 511, 586, 593, 625
EaeI YGGCCR 1 cut(s) 689
EagI CGGCCG 1 cut(s) 689
EclXI CGGCCG 1 cut(s) 689
Eco130I CCWWGG 2 cut(s) 304, 653
Eco52I CGGCCG 1 cut(s) 689
EcoRII CCWGG 1 cut(s) 203
EcoT14I CCWWGG 2 cut(s) 304, 653
ErhI CCWWGG 2 cut(s) 304, 653
FaqI GGGAC 2 cut(s) 23, 148
FbaI TGATCA 1 cut(s) 586
Fnu4HI GCNGC 6 cut(s) 616, 619, 648, 689, 729, 732
FokI GGATG 2 cut(s) 8, 164
Fsp4HI GCNGC 6 cut(s) 616, 619, 648, 689, 729, 732
FspBI CTAG 3 cut(s) 368, 600, 612
GluI GCNGC 6 cut(s) 616, 619, 648, 689, 729, 732
GsuI CTGGAG 1 cut(s) 726
HaeIII GGCC 2 cut(s) 446, 691
HapII CCGG 3 cut(s) 102, 443, 692
HinfI GANTC 3 cut(s) 136, 373, 772
HpaII CCGG 3 cut(s) 102, 443, 692
HphI GGTGA 1 cut(s) 163
Hpy166II GTNNAC 1 cut(s) 553
Hpy188I TCNGA 1 cut(s) 245
Hpy8I GTNNAC 1 cut(s) 553
HpyAV CCTTC 1 cut(s) 61
HpyCH4III ACNGT 5 cut(s) 16, 88, 474, 535, 715
HpyCH4V TGCA 6 cut(s) 256, 284, 295, 539, 572, 719
HpyF10VI GCNNNNNNNGC 3 cut(s) 167, 578, 725
HpyF3I CTNAG 1 cut(s) 344
KroI GCCGGC 1 cut(s) 101
KroNI GCCGGC 1 cut(s) 103
Ksp22I TGATCA 1 cut(s) 586
Kzo9I GATC 5 cut(s) 300, 511, 586, 593, 625
LmnI GCTCC 3 cut(s) 269, 655, 766
Lsp1109I GCAGC 4 cut(s) 602, 634, 715, 718
LweI GCATC 2 cut(s) 293, 349
MaeI CTAG 3 cut(s) 368, 600, 612
MaeIII GTNAC 1 cut(s) 370
MalI GATC 5 cut(s) 302, 513, 588, 595, 627
MboI GATC 5 cut(s) 300, 511, 586, 593, 625
MboII GAAGA 2 cut(s) 348, 455
MflI RGATCY 1 cut(s) 593
MhlI GDGCHC 2 cut(s) 11, 93
MluCI AATT 6 cut(s) 279, 327, 561, 720, 747, 759
MlyI GAGTC 2 cut(s) 130, 367
MmeI TCCRAC 1 cut(s) 415
MnlI CCTC 7 cut(s) 201, 231, 330, 360, 375, 490, 745
MroNI GCCGGC 1 cut(s) 101
MseI TTAA 3 cut(s) 108, 494, 699
MslI CAYNNNNRTG 2 cut(s) 14, 679
MspI CCGG 3 cut(s) 102, 443, 692
MspR9I CCNGG 1 cut(s) 205
MvaI CCWGG 1 cut(s) 205
MwoI GCNNNNNNNGC 3 cut(s) 167, 578, 725
NaeI GCCGGC 1 cut(s) 103
NdeII GATC 5 cut(s) 300, 511, 586, 593, 625
NgoMIV GCCGGC 1 cut(s) 101
NlaIV GGNNCC 2 cut(s) 10, 666
NmuCI GTSAC 1 cut(s) 370
OliI CACNNNNGTG 1 cut(s) 14
PaqCI CACCTGC 1 cut(s) 563
PdiI GCCGGC 1 cut(s) 103
PfeI GAWTC 1 cut(s) 772
PfoI TCCNGGA 1 cut(s) 203
PkrI GCNGC 6 cut(s) 617, 620, 649, 690, 730, 733
PleI GAGTC 2 cut(s) 130, 367
PpsI GAGTC 2 cut(s) 130, 367
Psp6I CCWGG 1 cut(s) 203
PspGI CCWGG 1 cut(s) 203
PspN4I GGNNCC 2 cut(s) 10, 666
PspPI GGNCC 1 cut(s) 445
PstI CTGCAG 1 cut(s) 574
PsuI RGATCY 1 cut(s) 593
RsaI GTAC 4 cut(s) 399, 525, 554, 756
RsaNI GTAC 4 cut(s) 398, 524, 553, 755
RseI CAYNNNNRTG 2 cut(s) 14, 679
SaqAI TTAA 3 cut(s) 108, 494, 699
SatI GCNGC 6 cut(s) 616, 619, 648, 689, 729, 732
Sau3AI GATC 5 cut(s) 300, 511, 586, 593, 625
Sau96I GGNCC 1 cut(s) 445
SchI GAGTC 2 cut(s) 130, 367
ScrFI CCNGG 1 cut(s) 205
SduI GDGCHC 2 cut(s) 11, 93
SetI ASST 7 cut(s) 32, 212, 242, 577, 617, 756, 771
SfaNI GCATC 2 cut(s) 293, 349
SfcI CTRYAG 1 cut(s) 570
SmiMI CAYNNNNRTG 2 cut(s) 14, 679
Sse9I AATT 6 cut(s) 279, 327, 561, 720, 747, 759
SsiI CCGC 3 cut(s) 521, 619, 688
SspI AATATT 1 cut(s) 507
SspMI CTAG 3 cut(s) 368, 600, 612
StyD4I CCNGG 1 cut(s) 203
StyI CCWWGG 2 cut(s) 304, 653
TaaI ACNGT 5 cut(s) 16, 88, 474, 535, 715
TaqI TCGA 1 cut(s) 514
TasI AATT 6 cut(s) 279, 327, 561, 720, 747, 759
TatI WGTACW 1 cut(s) 397
TauI GCSGC 2 cut(s) 621, 691
TfiI GAWTC 1 cut(s) 772
Tru1I TTAA 3 cut(s) 108, 494, 699
Tru9I TTAA 3 cut(s) 108, 494, 699
TscAI CASTG 4 cut(s) 19, 220, 538, 628
TseFI GTSAC 1 cut(s) 370
TseI GCWGC 4 cut(s) 615, 647, 728, 731
Tsp45I GTSAC 1 cut(s) 370
TspDTI ATGAA 5 cut(s) 10, 153, 163, 211, 503
TspRI CASTG 4 cut(s) 19, 220, 538, 628
XapI RAATTY 1 cut(s) 327
XspI CTAG 3 cut(s) 368, 600, 612
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.